This repository serves as a centralized location for organizing and tracking the development of the NCATS Translator Text Mining Provider. The Text Mining Provider aims to provide an up-to-date, Biolink-compatible, knowledge graph composed of assertions mined from the available full-text biomedical literature as well as a knowledge graph based on the cooccurrence of pairs of concepts in the biomedical literature, scored using a suite of different cooccurrence metrics.
| Available Knowledge Graphs | Description |
|---|---|
| Targeted text-mined association KG | a KG of Biolink associations extracted from scientific text |
| Concept cooccurrence KG | a KG linking concepts that cooccur in scientific text, scored at different levels, e.g. title, sentence, document, using a suite of cooccurrence metrics |
The Text Mining Provider aims to serve the needs of the NCATS Translator community, and thus development efforts are prioritized based on community input and feedback. If you have a specific target you would like the Text Mining Provider to address, or would like to report a text mining error please submit an issue to this repository.