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<h1>data-science-book-uva</h1>
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<h2> Contents </h2>
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<section class="tex2jax_ignore mathjax_ignore" id="data-science-book-uva">
<h1>data-science-book-uva<a class="headerlink" href="#data-science-book-uva" title="Permalink to this headline">#</a></h1>
<p>This repository hosts the website for the data science course (Bachelor level) at the Informatics Institute, University of Amsterdam. The webite is built using <a class="reference external" href="https://jupyterbook.org/en/stable/intro.html">Jupyter Book</a>.</p>
<p>All the course content in this repository is licensed under a <a class="reference external" href="http://creativecommons.org/licenses/by-nc-sa/4.0/">Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License</a>.</p>
<p>Below are the steps to update and build this book. First, clone this repository to your local machine. Assume that you already have <a class="reference external" href="https://docs.conda.io/en/main/miniconda.html">miniconda</a> installed. Next, install the jupyter-book package:</p>
<div class="highlight-sh notranslate"><div class="highlight"><pre><span></span>$ conda create -n jupyterbook
$ conda activate jupyterbook
$ conda install python
$ pip install -U jupyter-book
$ pip install ghp-import
$ jupyter-book --help
</pre></div>
</div>
<p>Then, clone this repository and build the book:</p>
<div class="highlight-sh notranslate"><div class="highlight"><pre><span></span>$ git clone https://github.com/MultiX-Amsterdam/data-science-book-uva
$ <span class="nb">cd</span> data-science-book-uva
$ jupyter-book build .
</pre></div>
</div>
<p>To rebuild the entire book, use the following:</p>
<div class="highlight-sh notranslate"><div class="highlight"><pre><span></span>$ jupyter-book build --all .
</pre></div>
</div>
<p>Once it is done, you can view the book in the <span class="xref myst">html content</span> folder using a web browser. To update the book online in this GitHub repository (in the gh-pages branch), run the following:</p>
<div class="highlight-sh notranslate"><div class="highlight"><pre><span></span>$ ghp-import -n -p -f _build/html
</pre></div>
</div>
<p>The above steps will update the gh-pages branch, which hosts the website. Finally, follow the normal git flow to commit the changes and push the code to the main branch in this repository.</p>
<section id="error-handling">
<h2>Error Handling<a class="headerlink" href="#error-handling" title="Permalink to this headline">#</a></h2>
<p>You many encounter an error that looks like the following when building the notebook:</p>
<div class="highlight-sh notranslate"><div class="highlight"><pre><span></span>Extension error <span class="o">(</span>sphinx_external_toc.events<span class="o">)</span>:
Handler <<span class="k">function</span> add_changed_toctrees at 0x10a031750> <span class="k">for</span> event <span class="s1">'env-get-outdated'</span> threw an exception <span class="o">(</span>exception: <span class="s1">'Document'</span> object has no attribute <span class="s1">'docname'</span><span class="o">)</span>
Traceback <span class="o">(</span>most recent call last<span class="o">)</span>:
File <span class="s2">"/opt/homebrew/Caskroom/miniconda/base/envs/jupyterbook/lib/python3.10/site-packages/sphinx/events.py"</span>, line <span class="m">94</span>, <span class="k">in</span> emit
results.append<span class="o">(</span>listener.handler<span class="o">(</span>self.app, *args<span class="o">))</span>
File <span class="s2">"/opt/homebrew/Caskroom/miniconda/base/envs/jupyterbook/lib/python3.10/site-packages/sphinx_external_toc/events.py"</span>, line <span class="m">138</span>, <span class="k">in</span> add_changed_toctrees
<span class="nv">filenames</span> <span class="o">=</span> site_map.get_changed<span class="o">(</span>previous_map<span class="o">)</span>
File <span class="s2">"/opt/homebrew/Caskroom/miniconda/base/envs/jupyterbook/lib/python3.10/site-packages/sphinx_external_toc/api.py"</span>, line <span class="m">220</span>, <span class="k">in</span> get_changed
<span class="k">if</span> self.root.docname !<span class="o">=</span> previous.root.docname:
AttributeError: <span class="s1">'Document'</span> object has no attribute <span class="s1">'docname'</span>
</pre></div>
</div>
<p>In this case, just run the following command, and the problem should disappear:</p>
<div class="highlight-sh notranslate"><div class="highlight"><pre><span></span>pip install jupyter-cache
</pre></div>
</div>
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