From 4100a66282ccd983fa86f14954b99c2630f22056 Mon Sep 17 00:00:00 2001 From: Dominic Muston Date: Wed, 5 Jun 2024 17:26:35 -0400 Subject: [PATCH 1/4] Update news for forthcoming version --- NEWS.md | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/NEWS.md b/NEWS.md index 4fb20a2..d6e5d0c 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,11 @@ # psm3mkv (development version) +# psm3mkv 0.3.2 + +- Revised calculations of constrained restricted mean durations in internal function `calc_drmd()` and the accompanying `vignette("background-mortality")`. +- Add citation to publication in *Applied Health Economics and Health Policy*, [DOI: 10.1007/s40258-024-00884-2 ](https://doi.org/10.1007/s40258-024-00884-2). +- Updated license statements to 2024 + # psm3mkv 0.3.1 - Submission to CRAN, including changes requested by CRAN @@ -20,7 +26,7 @@ Several minor changes to ready the package for CRAN. # psm3mkv 0.2.1 (14 Apr 2024) -Constraining calculations of restricted mean durations and the accompanying `vignette("background-mortality")` has been reworked. The calculations using integral/continuous methods was not reliable. Instead, `calc_allrmds` now has a `rmdmethod="disc"` option to allow for discretized calculations for a given timestep (defaulting at one week). There is a new collection of functions in `discrmd.R` to provide for this, as well as `constrain_survprob()` function, which constrains a vector of survival estimates at given times such that the underlying hazard is at least as great as in an accompanying lifetable. +Constraining calculations of restricted mean durations and the accompanying `vignette("background-mortality")` has been reworked. The calculations using integral/continuous methods was not reliable. Instead, `calc_allrmds()` now has a `rmdmethod="disc"` option to allow for discretized calculations for a given timestep (defaulting at one week). There is a new collection of functions in `discrmd.R` to provide for this, as well as `constrain_survprob()` function, which constrains a vector of survival estimates at given times such that the underlying hazard is at least as great as in an accompanying lifetable. # psm3mkv 0.2.0 (26 Jan 2024) From 8e686a007bd06706867e1c338b6b8906ba5f1bb9 Mon Sep 17 00:00:00 2001 From: Dominic Muston Date: Wed, 5 Jun 2024 17:35:26 -0400 Subject: [PATCH 2/4] Update CRAN comments for forthcoming submission --- cran-comments.md | 11 +---------- 1 file changed, 1 insertion(+), 10 deletions(-) diff --git a/cran-comments.md b/cran-comments.md index c24f32e..01f41fc 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,10 +1,3 @@ -## Resubmission - -This is a resubmission. In this version I have: -- Shortened the package title in DESCRIPTION as requested -- Edited the citation as requested in the Description field of DESCRIPTION -- Removed information messages from graph_survs() in probgraphs.R - ## Test environments * win-builder (devel) @@ -18,9 +11,7 @@ This is a resubmission. In this version I have: ## R CMD check results -0 errors | 0 warnings | 1 note - -* This is a new release. +0 errors | 0 warnings | 0 notes From e56ff49aca38b5a99854e2331bd81cf7c39cb425 Mon Sep 17 00:00:00 2001 From: Dominic Muston Date: Thu, 6 Jun 2024 20:20:52 -0400 Subject: [PATCH 3/4] Add compare_psm_likes() to news --- NEWS.md | 1 + 1 file changed, 1 insertion(+) diff --git a/NEWS.md b/NEWS.md index d6e5d0c..2ba27e8 100644 --- a/NEWS.md +++ b/NEWS.md @@ -3,6 +3,7 @@ # psm3mkv 0.3.2 - Revised calculations of constrained restricted mean durations in internal function `calc_drmd()` and the accompanying `vignette("background-mortality")`. +- Provide a convenience function, `compare_psm_likes()`, to compare the total log-likelihood values for the patient-level dataset after fitting PSM-simple and PSM-complex models to each combination of endpoint distributions. - Add citation to publication in *Applied Health Economics and Health Policy*, [DOI: 10.1007/s40258-024-00884-2 ](https://doi.org/10.1007/s40258-024-00884-2). - Updated license statements to 2024 From 160ac1af80de76464b48a29597d1087728f6601d Mon Sep 17 00:00:00 2001 From: Dominic Muston Date: Thu, 6 Jun 2024 20:32:28 -0400 Subject: [PATCH 4/4] Increment version number to 0.3.2 --- DESCRIPTION | 2 +- NEWS.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 885fda3..21ba5b8 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: psm3mkv Title: Evaluate Partitioned Survival and State Transition Models -Version: 0.3.1.9000 +Version: 0.3.2 Authors@R: c( person("Dominic", "Muston", , "dominic.muston@merck.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4876-7940")), diff --git a/NEWS.md b/NEWS.md index 2ba27e8..71a7964 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# psm3mkv (development version) +# psm3mkv 0.3.2 # psm3mkv 0.3.2