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Deprecation #24

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anmolseth00 opened this issue Jun 24, 2024 · 0 comments
Open

Deprecation #24

anmolseth00 opened this issue Jun 24, 2024 · 0 comments

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@anmolseth00
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anmolseth00 commented Jun 24, 2024 •
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There are a few outdated lines of code which need to be updated. The specific warnings in question -

  • CodonUsageIndices.py throws the following error: BiopythonDeprecationWarning: This module has been DEPRECATED. Please use the CodonAdaptationIndex class in Bio.SeqUtils instead.
  • CodonUsage.py also throws the same error: BiopythonDeprecationWarning: This module has been DEPRECATED. Please use the CodonAdaptationIndex class in Bio.SeqUtils instead.
  • main.py throws the following error: PydanticDeprecatedSince20: The parse_objmethod is deprecated; usemodel_validate instead. Deprecated in Pydantic V2.0 to be removed in V3.0.
  • optimize.py doesn't seem to like the " \ | " string when printing out the logo.
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