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I have cracked the problem with the substructure & jets and it is so stupidly simple
I have crawled all over the code, made loads of test edits, etc etc, so at least I think I know how most things work now.
In the end it is because of the
#ifdef MA5_FASTJET_MODE
tags in the RecJetFormat.h & RecJetFormat.cpp
and because there are problems/omissions in the creation of the setup.sh and, most importantly, the setup.csh files: there are still some bugs in those that are being produced, possibly because of python3.12 errors, but in this case you simply don't add the line
setenv FASTJET_FLAG "-DMA5_FASTJET_MODE"
to the setup.csh file, only to the bash one.
so, you need to add
Feature details
Number of jets are set as number of bits instead.
Implementation
Explanation from @mdgoodsell:
How important would you say this feature is?
3: Very important! Blocking work.
Additional information
No response
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