diff --git a/stable/_sources/versions.rst.txt b/stable/_sources/versions.rst.txt
index 09cdc133..bc24806e 100644
--- a/stable/_sources/versions.rst.txt
+++ b/stable/_sources/versions.rst.txt
@@ -43,6 +43,7 @@ Documentation    On GitHub
 `v0.28.0`_        `0.28.0`_
 `v0.29.0`_        `0.29.0`_
 `v0.30.0`_        `0.30.0`_
+`v0.31.0`_        `0.31.0`_
 ================ ===============
 
 .. _`stable`: ../stable/index.html
@@ -119,3 +120,5 @@ Documentation    On GitHub
 .. _`0.29.0`: https://github.com/MPAS-Dev/MPAS-Tools/tree/0.29.0
 .. _`v0.30.0`: ../0.30.0/index.html
 .. _`0.30.0`: https://github.com/MPAS-Dev/MPAS-Tools/tree/0.30.0
+.. _`v0.31.0`: ../0.31.0/index.html
+.. _`0.31.0`: https://github.com/MPAS-Dev/MPAS-Tools/tree/0.31.0
diff --git a/stable/generated/mpas_tools.io.write_netcdf.html b/stable/generated/mpas_tools.io.write_netcdf.html
index a0f98b32..e2cdb981 100644
--- a/stable/generated/mpas_tools.io.write_netcdf.html
+++ b/stable/generated/mpas_tools.io.write_netcdf.html
@@ -149,7 +149,7 @@ <h1>mpas_tools.io.write_netcdf<a class="headerlink" href="#mpas-tools-io-write-n
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>ds</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – The dataset to save</p></li>
+<li><p><strong>ds</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – The dataset to save</p></li>
 <li><p><strong>fileName</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><em>str</em></a>) – The path for the NetCDF file to write</p></li>
 <li><p><strong>fillValues</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.12)"><em>dict</em></a><em>, </em><em>optional</em>) – A dictionary of fill values for different NetCDF types.  Default is
 <code class="docutils literal notranslate"><span class="pre">mpas_tools.io.default_fills</span></code>, which can be modified but which
@@ -158,7 +158,7 @@ <h1>mpas_tools.io.write_netcdf<a class="headerlink" href="#mpas-tools-io-write-n
 <code class="docutils literal notranslate"><span class="pre">mpas_tools.io.default_format</span></code>, which can be modified but which
 defaults to <code class="docutils literal notranslate"><span class="pre">'NETCDF3_64BIT'</span></code></p></li>
 <li><p><strong>engine</strong> (<em>{'netcdf4'</em><em>, </em><em>'scipy'</em><em>, </em><em>'h5netcdf'}</em><em>, </em><em>optional</em>) – The library to use for NetCDF output.  The default is the same as
-in <a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.to_netcdf.html#xarray.Dataset.to_netcdf" title="(in xarray v2024.1.2.dev0)"><code class="xref py py-meth docutils literal notranslate"><span class="pre">xarray.Dataset.to_netcdf()</span></code></a> and depends on <code class="docutils literal notranslate"><span class="pre">format</span></code>.
+in <a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.to_netcdf.html#xarray.Dataset.to_netcdf" title="(in xarray v2024.2.1.dev0)"><code class="xref py py-meth docutils literal notranslate"><span class="pre">xarray.Dataset.to_netcdf()</span></code></a> and depends on <code class="docutils literal notranslate"><span class="pre">format</span></code>.
 You can override the default by setting
 <code class="docutils literal notranslate"><span class="pre">mpas_tools.io.default_engine</span></code></p></li>
 <li><p><strong>char_dim_name</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><em>str</em></a><em>, </em><em>optional</em>) – The name of the dimension used for character strings, or None to let
diff --git a/stable/generated/mpas_tools.mesh.conversion.convert.html b/stable/generated/mpas_tools.mesh.conversion.convert.html
index c3b648fc..7d5f7709 100644
--- a/stable/generated/mpas_tools.mesh.conversion.convert.html
+++ b/stable/generated/mpas_tools.mesh.conversion.convert.html
@@ -161,7 +161,7 @@ <h1>mpas_tools.mesh.conversion.convert<a class="headerlink" href="#mpas-tools-me
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsIn</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A data set to convert</p></li>
+<li><p><strong>dsIn</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A data set to convert</p></li>
 <li><p><strong>graphInfoFileName</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><em>str</em></a><em>, </em><em>optional</em>) – A file path (relative or absolute) where the graph file (typically
 <code class="docutils literal notranslate"><span class="pre">graph.info</span></code> should be written out.  By default, <code class="docutils literal notranslate"><span class="pre">graph.info</span></code> is
 not saved.</p></li>
diff --git a/stable/generated/mpas_tools.mesh.conversion.cull.html b/stable/generated/mpas_tools.mesh.conversion.cull.html
index e4d6c48e..23fc2ff5 100644
--- a/stable/generated/mpas_tools.mesh.conversion.cull.html
+++ b/stable/generated/mpas_tools.mesh.conversion.cull.html
@@ -163,13 +163,13 @@ <h1>mpas_tools.mesh.conversion.cull<a class="headerlink" href="#mpas-tools-mesh-
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsIn</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A data set to cull, possibly with a <code class="docutils literal notranslate"><span class="pre">cullCell</span></code> field set to one where
+<li><p><strong>dsIn</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A data set to cull, possibly with a <code class="docutils literal notranslate"><span class="pre">cullCell</span></code> field set to one where
 cells should be removed</p></li>
-<li><p><strong>dsMask</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a><em> or </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><em>list</em></a><em>, </em><em>optional</em>) – A data set (or data sets) with region masks that are 1 where cells
+<li><p><strong>dsMask</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a><em> or </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><em>list</em></a><em>, </em><em>optional</em>) – A data set (or data sets) with region masks that are 1 where cells
 should be culled</p></li>
-<li><p><strong>dsInverse</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a><em> or </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><em>list</em></a><em>, </em><em>optional</em>) – A data set (or data sets) with region masks that are 0 where cells
+<li><p><strong>dsInverse</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a><em> or </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><em>list</em></a><em>, </em><em>optional</em>) – A data set (or data sets) with region masks that are 0 where cells
 should be culled</p></li>
-<li><p><strong>dsPreserve</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a><em> or </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><em>list</em></a><em>, </em><em>optional</em>) – A data set (or data sets) with region masks that are 1 where cells
+<li><p><strong>dsPreserve</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a><em> or </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><em>list</em></a><em>, </em><em>optional</em>) – A data set (or data sets) with region masks that are 1 where cells
 should <em>not</em> be culled</p></li>
 <li><p><strong>graphInfoFileName</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><em>str</em></a><em>, </em><em>optional</em>) – A file path (relative or absolute) where the graph file (typically
 <code class="docutils literal notranslate"><span class="pre">culled_graph.info</span></code> should be written out.  By default,
diff --git a/stable/generated/mpas_tools.mesh.conversion.mask.html b/stable/generated/mpas_tools.mesh.conversion.mask.html
index 4e1807dc..df362aee 100644
--- a/stable/generated/mpas_tools.mesh.conversion.mask.html
+++ b/stable/generated/mpas_tools.mesh.conversion.mask.html
@@ -160,7 +160,7 @@ <h1>mpas_tools.mesh.conversion.mask<a class="headerlink" href="#mpas-tools-mesh-
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a><em>, </em><em>optional</em>) – An MPAS mesh on which the masks should be created</p></li>
+<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a><em>, </em><em>optional</em>) – An MPAS mesh on which the masks should be created</p></li>
 <li><p><strong>fcMask</strong> (<a class="reference external" href="http://mpas-dev.github.io/geometric_features/stable/generated/geometric_features.FeatureCollection.html#geometric_features.FeatureCollection" title="(in geometric_features v1.3.0)"><em>geometric_features.FeatureCollection</em></a><em>, </em><em>optional</em>) – A feature collection containing features to use to create the mask</p></li>
 <li><p><strong>logger</strong> (<a class="reference external" href="https://docs.python.org/3/library/logging.html#logging.Logger" title="(in Python v3.12)"><em>logging.Logger</em></a><em>, </em><em>optional</em>) – A logger for the output if not stdout</p></li>
 <li><p><strong>dir</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><em>str</em></a><em>, </em><em>optional</em>) – A directory in which a temporary directory will be added with files
diff --git a/stable/generated/mpas_tools.mesh.mask.compute_mpas_flood_fill_mask.html b/stable/generated/mpas_tools.mesh.mask.compute_mpas_flood_fill_mask.html
index d20581bb..ce287aff 100644
--- a/stable/generated/mpas_tools.mesh.mask.compute_mpas_flood_fill_mask.html
+++ b/stable/generated/mpas_tools.mesh.mask.compute_mpas_flood_fill_mask.html
@@ -161,7 +161,7 @@ <h1>mpas_tools.mesh.mask.compute_mpas_flood_fill_mask<a class="headerlink" href=
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – An MPAS mesh on which the masks should be created</p></li>
+<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – An MPAS mesh on which the masks should be created</p></li>
 <li><p><strong>fcSeed</strong> (<a class="reference external" href="http://mpas-dev.github.io/geometric_features/stable/generated/geometric_features.FeatureCollection.html#geometric_features.FeatureCollection" title="(in geometric_features v1.3.0)"><em>geometric_features.FeatureCollection</em></a>) – A feature collection containing points at which to start the flood fill</p></li>
 <li><p><strong>logger</strong> (<a class="reference external" href="https://docs.python.org/3/library/logging.html#logging.Logger" title="(in Python v3.12)"><em>logging.Logger</em></a><em>, </em><em>optional</em>) – A logger for the output if not stdout</p></li>
 <li><p><strong>workers</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.12)"><em>int</em></a><em>, </em><em>optional</em>) – The number of threads used for finding nearest neighbors.  The default
diff --git a/stable/generated/mpas_tools.mesh.mask.compute_mpas_region_masks.html b/stable/generated/mpas_tools.mesh.mask.compute_mpas_region_masks.html
index 8752a30a..73b5ce1a 100644
--- a/stable/generated/mpas_tools.mesh.mask.compute_mpas_region_masks.html
+++ b/stable/generated/mpas_tools.mesh.mask.compute_mpas_region_masks.html
@@ -160,7 +160,7 @@ <h1>mpas_tools.mesh.mask.compute_mpas_region_masks<a class="headerlink" href="#m
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – An MPAS mesh on which the masks should be created</p></li>
+<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – An MPAS mesh on which the masks should be created</p></li>
 <li><p><strong>fcMask</strong> (<a class="reference external" href="http://mpas-dev.github.io/geometric_features/stable/generated/geometric_features.FeatureCollection.html#geometric_features.FeatureCollection" title="(in geometric_features v1.3.0)"><em>geometric_features.FeatureCollection</em></a>) – A feature collection containing features to use to create the mask</p></li>
 <li><p><strong>maskTypes</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.12)"><em>tuple</em></a><em> of </em><em>{'cell'</em><em>, </em><em>'edge'</em><em>, </em><em>'vertex'}</em><em>, </em><em>optional</em>) – Which type(s) of masks to make.  Masks are created based on whether
 the latitude and longitude associated with each of these locations
diff --git a/stable/generated/mpas_tools.mesh.mask.compute_mpas_transect_masks.html b/stable/generated/mpas_tools.mesh.mask.compute_mpas_transect_masks.html
index 6cf9fe13..5fac498f 100644
--- a/stable/generated/mpas_tools.mesh.mask.compute_mpas_transect_masks.html
+++ b/stable/generated/mpas_tools.mesh.mask.compute_mpas_transect_masks.html
@@ -160,7 +160,7 @@ <h1>mpas_tools.mesh.mask.compute_mpas_transect_masks<a class="headerlink" href="
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – An MPAS mesh on which the masks should be created</p></li>
+<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – An MPAS mesh on which the masks should be created</p></li>
 <li><p><strong>fcMask</strong> (<a class="reference external" href="http://mpas-dev.github.io/geometric_features/stable/generated/geometric_features.FeatureCollection.html#geometric_features.FeatureCollection" title="(in geometric_features v1.3.0)"><em>geometric_features.FeatureCollection</em></a>) – A feature collection containing features to use to create the mask</p></li>
 <li><p><strong>earthRadius</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.12)"><em>float</em></a>) – The radius of the earth in meters</p></li>
 <li><p><strong>maskTypes</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#tuple" title="(in Python v3.12)"><em>tuple</em></a><em> of </em><em>{'cell'</em><em>, </em><em>'edge'</em><em>, </em><em>'vertex'}</em><em>, </em><em>optional</em>) – Which type(s) of masks to make.  Masks are created based on whether
diff --git a/stable/generated/mpas_tools.ocean.coastline_alteration.add_critical_land_blockages.html b/stable/generated/mpas_tools.ocean.coastline_alteration.add_critical_land_blockages.html
index 122355a3..d13b2f3f 100644
--- a/stable/generated/mpas_tools.ocean.coastline_alteration.add_critical_land_blockages.html
+++ b/stable/generated/mpas_tools.ocean.coastline_alteration.add_critical_land_blockages.html
@@ -181,8 +181,8 @@ <h1>mpas_tools.ocean.coastline_alteration.add_critical_land_blockages<a class="h
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsMask</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – The mask to which critical blockages should be added</p></li>
-<li><p><strong>dsBlockages</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – The transect masks defining critical land regions that should block
+<li><p><strong>dsMask</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – The mask to which critical blockages should be added</p></li>
+<li><p><strong>dsBlockages</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – The transect masks defining critical land regions that should block
 ocean flow (e.g. the Antarctic Peninsula)</p></li>
 </ul>
 </dd>
diff --git a/stable/generated/mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask.html b/stable/generated/mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask.html
index 255c505e..e641829f 100644
--- a/stable/generated/mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask.html
+++ b/stable/generated/mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask.html
@@ -182,8 +182,8 @@ <h1>mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask<a class=
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsMask</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A land-mask data set</p></li>
-<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – MPAS Mesh data set</p></li>
+<li><p><strong>dsMask</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A land-mask data set</p></li>
+<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – MPAS Mesh data set</p></li>
 <li><p><strong>latitude_threshold</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.12)"><em>float</em></a><em>, </em><em>optional</em>) – Minimum latitude, in degrees, for transect widening</p></li>
 <li><p><strong>nSweeps</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.12)"><em>int</em></a><em>, </em><em>optional</em>) – Maximum number of sweeps to search for land-locked cells</p></li>
 </ul>
diff --git a/stable/generated/mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks.html b/stable/generated/mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks.html
index f6b0822e..d5d1e4ac 100644
--- a/stable/generated/mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks.html
+++ b/stable/generated/mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks.html
@@ -182,8 +182,8 @@ <h1>mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks<a class="hea
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsMask</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – The mask to which critical blockages should be added</p></li>
-<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – The transect masks defining critical land regions that should block
+<li><p><strong>dsMask</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – The mask to which critical blockages should be added</p></li>
+<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – The transect masks defining critical land regions that should block
 ocean flow (e.g. the Antarctic Peninsula)</p></li>
 <li><p><strong>latitude_threshold</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.12)"><em>float</em></a>) – Minimum latitude, degrees, for transect widening</p></li>
 </ul>
diff --git a/stable/generated/mpas_tools.ocean.depth.compute_depth.html b/stable/generated/mpas_tools.ocean.depth.compute_depth.html
index dd4ab04e..e148a4d1 100644
--- a/stable/generated/mpas_tools.ocean.depth.compute_depth.html
+++ b/stable/generated/mpas_tools.ocean.depth.compute_depth.html
@@ -180,7 +180,7 @@ <h1>mpas_tools.ocean.depth.compute_depth<a class="headerlink" href="#mpas-tools-
 <dd><p>Computes depth and depth bounds given refBottomDepth</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
-<dd class="field-odd"><p><strong>refBottomDepth</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – the depth of the bottom of each vertical layer in the initial state
+<dd class="field-odd"><p><strong>refBottomDepth</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – the depth of the bottom of each vertical layer in the initial state
 (perfect z-level coordinate)</p>
 </dd>
 <dt class="field-even">Returns<span class="colon">:</span></dt>
diff --git a/stable/generated/mpas_tools.ocean.depth.compute_zmid.html b/stable/generated/mpas_tools.ocean.depth.compute_zmid.html
index d6955d95..86e82204 100644
--- a/stable/generated/mpas_tools.ocean.depth.compute_zmid.html
+++ b/stable/generated/mpas_tools.ocean.depth.compute_zmid.html
@@ -182,9 +182,9 @@ <h1>mpas_tools.ocean.depth.compute_zmid<a class="headerlink" href="#mpas-tools-o
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>bottomDepth</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – the depth of the ocean bottom (positive)</p></li>
-<li><p><strong>maxLevelCell</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – the 1-based vertical index of the bottom of the ocean</p></li>
-<li><p><strong>layerThickness</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – the thickness of MPAS-Ocean layers (possibly as a function of time)</p></li>
+<li><p><strong>bottomDepth</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – the depth of the ocean bottom (positive)</p></li>
+<li><p><strong>maxLevelCell</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – the 1-based vertical index of the bottom of the ocean</p></li>
+<li><p><strong>layerThickness</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – the thickness of MPAS-Ocean layers (possibly as a function of time)</p></li>
 <li><p><strong>depth_dim</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><em>str</em></a><em>, </em><em>optional</em>) – the name of the vertical dimension</p></li>
 </ul>
 </dd>
diff --git a/stable/generated/mpas_tools.ocean.transects.find_transect_levels_and_weights.html b/stable/generated/mpas_tools.ocean.transects.find_transect_levels_and_weights.html
index ddb73503..8e3b7d99 100644
--- a/stable/generated/mpas_tools.ocean.transects.find_transect_levels_and_weights.html
+++ b/stable/generated/mpas_tools.ocean.transects.find_transect_levels_and_weights.html
@@ -187,12 +187,12 @@ <h1>mpas_tools.ocean.transects.find_transect_levels_and_weights<a class="headerl
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines nodes of the transect, the results of calling
+<li><p><strong>dsTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines nodes of the transect, the results of calling
 <a class="reference internal" href="mpas_tools.viz.transects.find_transect_cells_and_weights.html#mpas_tools.viz.transects.find_transect_cells_and_weights" title="mpas_tools.viz.transects.find_transect_cells_and_weights"><code class="xref py py-func docutils literal notranslate"><span class="pre">mpas_tools.viz.transects.find_transect_cells_and_weights()</span></code></a></p></li>
-<li><p><strong>layerThickness</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – layer thicknesses on the MPAS mesh</p></li>
-<li><p><strong>bottomDepth</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – the (positive down) depth of the seafloor on the MPAS mesh</p></li>
-<li><p><strong>maxLevelCell</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – the vertical zero-based index of the bathymetry on the MPAS mesh</p></li>
-<li><p><strong>zTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a><em>, </em><em>optional</em>) – the z coordinate of the transect (1D or 2D).  If 2D, it must have the
+<li><p><strong>layerThickness</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – layer thicknesses on the MPAS mesh</p></li>
+<li><p><strong>bottomDepth</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – the (positive down) depth of the seafloor on the MPAS mesh</p></li>
+<li><p><strong>maxLevelCell</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – the vertical zero-based index of the bathymetry on the MPAS mesh</p></li>
+<li><p><strong>zTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a><em>, </em><em>optional</em>) – the z coordinate of the transect (1D or 2D).  If 2D, it must have the
 same along-transect dimension as the lon and lat passed to
 <a class="reference internal" href="mpas_tools.viz.transects.find_transect_cells_and_weights.html#mpas_tools.viz.transects.find_transect_cells_and_weights" title="mpas_tools.viz.transects.find_transect_cells_and_weights"><code class="xref py py-func docutils literal notranslate"><span class="pre">mpas_tools.viz.transects.find_transect_cells_and_weights()</span></code></a></p></li>
 </ul>
diff --git a/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes.html b/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes.html
index e57774ab..305c7b58 100644
--- a/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes.html
+++ b/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes.html
@@ -183,9 +183,9 @@ <h1>mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes<a class="h
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsTransectTriangles</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles making up an MPAS-Ocean transect, the
+<li><p><strong>dsTransectTriangles</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles making up an MPAS-Ocean transect, the
 results of calling <code class="docutils literal notranslate"><span class="pre">find_transect_levels_and_weights()</span></code></p></li>
-<li><p><strong>da</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – An MPAS-Ocean 3D field with dimensions <cite>nCells`</cite> and <code class="docutils literal notranslate"><span class="pre">nVertLevels</span></code>
+<li><p><strong>da</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – An MPAS-Ocean 3D field with dimensions <cite>nCells`</cite> and <code class="docutils literal notranslate"><span class="pre">nVertLevels</span></code>
 (possibly among others)</p></li>
 </ul>
 </dd>
diff --git a/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangles.html b/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangles.html
index 5845d1e2..e3bd85c9 100644
--- a/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangles.html
+++ b/stable/generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangles.html
@@ -182,9 +182,9 @@ <h1>mpas_tools.ocean.transects.interp_mpas_to_transect_triangles<a class="header
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsTransectTriangles</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles making up an MPAS-Ocean transect, the
+<li><p><strong>dsTransectTriangles</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles making up an MPAS-Ocean transect, the
 results of calling <code class="docutils literal notranslate"><span class="pre">find_transect_levels_and_weights()</span></code></p></li>
-<li><p><strong>da</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – An MPAS-Ocean 3D field with dimensions <cite>nCells`</cite> and <code class="docutils literal notranslate"><span class="pre">nVertLevels</span></code>
+<li><p><strong>da</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – An MPAS-Ocean 3D field with dimensions <cite>nCells`</cite> and <code class="docutils literal notranslate"><span class="pre">nVertLevels</span></code>
 (possibly among others)</p></li>
 </ul>
 </dd>
diff --git a/stable/generated/mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes.html b/stable/generated/mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes.html
index 6545d1c3..f89a7a76 100644
--- a/stable/generated/mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes.html
+++ b/stable/generated/mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes.html
@@ -182,9 +182,9 @@ <h1>mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes<a
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsTransectTriangles</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles making up an MPAS-Ocean transect, the
+<li><p><strong>dsTransectTriangles</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles making up an MPAS-Ocean transect, the
 results of calling <code class="docutils literal notranslate"><span class="pre">find_transect_levels_and_weights()</span></code></p></li>
-<li><p><strong>da</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – An field on the original triangle mesh</p></li>
+<li><p><strong>da</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – An field on the original triangle mesh</p></li>
 </ul>
 </dd>
 <dt class="field-even">Returns<span class="colon">:</span></dt>
diff --git a/stable/generated/mpas_tools.ocean.viz.plot_ocean_transects.html b/stable/generated/mpas_tools.ocean.viz.plot_ocean_transects.html
index d7feec91..97ba8557 100644
--- a/stable/generated/mpas_tools.ocean.viz.plot_ocean_transects.html
+++ b/stable/generated/mpas_tools.ocean.viz.plot_ocean_transects.html
@@ -184,8 +184,8 @@ <h1>mpas_tools.ocean.viz.plot_ocean_transects<a class="headerlink" href="#mpas-t
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
 <li><p><strong>fc</strong> (<a class="reference external" href="http://mpas-dev.github.io/geometric_features/stable/generated/geometric_features.FeatureCollection.html#geometric_features.FeatureCollection" title="(in geometric_features v1.3.0)"><em>geometric_features.FeatureCollection</em></a>) – The transects to plot</p></li>
-<li><p><strong>ds</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – The MPAS-Ocean dataset to plot</p></li>
-<li><p><strong>ds_mesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a><em>, </em><em>optional</em>) – The MPAS-Ocean mesh to use for plotting, the same as <code class="docutils literal notranslate"><span class="pre">ds</span></code> by default</p></li>
+<li><p><strong>ds</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – The MPAS-Ocean dataset to plot</p></li>
+<li><p><strong>ds_mesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a><em>, </em><em>optional</em>) – The MPAS-Ocean mesh to use for plotting, the same as <code class="docutils literal notranslate"><span class="pre">ds</span></code> by default</p></li>
 <li><p><strong>variable_list</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><em>list</em></a><em> of </em><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><em>str</em></a><em>, </em><em>optional</em>) – The variables to plot</p></li>
 <li><p><strong>cmap</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><em>str</em></a><em>, </em><em>optional</em>) – The name of a colormap to use</p></li>
 <li><p><strong>flip</strong> (<em>book</em><em>, </em><em>optional</em>) – Whether to flip the x axes of all transect plot</p></li>
diff --git a/stable/generated/mpas_tools.translate.center.html b/stable/generated/mpas_tools.translate.center.html
index 2765389c..0af81809 100644
--- a/stable/generated/mpas_tools.translate.center.html
+++ b/stable/generated/mpas_tools.translate.center.html
@@ -159,7 +159,7 @@ <h1>mpas_tools.translate.center<a class="headerlink" href="#mpas-tools-translate
 origin to the center of the domain</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
-<dd class="field-odd"><p><strong>mesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A planar mesh to translate</p>
+<dd class="field-odd"><p><strong>mesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A planar mesh to translate</p>
 </dd>
 </dl>
 </dd></dl>
diff --git a/stable/generated/mpas_tools.translate.center_on_mesh.html b/stable/generated/mpas_tools.translate.center_on_mesh.html
index 573caef4..d9884e08 100644
--- a/stable/generated/mpas_tools.translate.center_on_mesh.html
+++ b/stable/generated/mpas_tools.translate.center_on_mesh.html
@@ -160,8 +160,8 @@ <h1>mpas_tools.translate.center_on_mesh<a class="headerlink" href="#mpas-tools-t
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>mesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A planar mesh to translate</p></li>
-<li><p><strong>otherMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – Another planar mesh whose center will become the center of this mesh.
+<li><p><strong>mesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A planar mesh to translate</p></li>
+<li><p><strong>otherMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – Another planar mesh whose center will become the center of this mesh.
 Uses xCell,yCell or, if those fields do not exist, will secondly try
 x1,y1 fields</p></li>
 </ul>
diff --git a/stable/generated/mpas_tools.translate.translate.html b/stable/generated/mpas_tools.translate.translate.html
index a8a8f45e..0adcda06 100644
--- a/stable/generated/mpas_tools.translate.translate.html
+++ b/stable/generated/mpas_tools.translate.translate.html
@@ -160,7 +160,7 @@ <h1>mpas_tools.translate.translate<a class="headerlink" href="#mpas-tools-transl
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>mesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A planar mesh to translate</p></li>
+<li><p><strong>mesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A planar mesh to translate</p></li>
 <li><p><strong>xOffset</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.12)"><em>float</em></a><em>, </em><em>optional</em>) – user-specified shift in the x-direction</p></li>
 <li><p><strong>yOffset</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.12)"><em>float</em></a><em>, </em><em>optional</em>) – user-specified shift in the y-direction</p></li>
 </ul>
diff --git a/stable/generated/mpas_tools.viz.mesh_to_triangles.mesh_to_triangles.html b/stable/generated/mpas_tools.viz.mesh_to_triangles.mesh_to_triangles.html
index 84230132..ed66b04d 100644
--- a/stable/generated/mpas_tools.viz.mesh_to_triangles.mesh_to_triangles.html
+++ b/stable/generated/mpas_tools.viz.mesh_to_triangles.mesh_to_triangles.html
@@ -147,7 +147,7 @@ <h1>mpas_tools.viz.mesh_to_triangles.mesh_to_triangles<a class="headerlink" href
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – An MPAS mesh</p></li>
+<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – An MPAS mesh</p></li>
 <li><p><strong>periodicCopy</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.12)"><em>bool</em></a><em>, </em><em>optional</em>) – Whether to make a periodic copy of triangles that cross -180/180 degrees
 longitude.  This is helpful when plotting triangles in a lon/lat space.</p></li>
 </ul>
diff --git a/stable/generated/mpas_tools.viz.transects.find_planar_transect_cells_and_weights.html b/stable/generated/mpas_tools.viz.transects.find_planar_transect_cells_and_weights.html
index 91080b70..461d0d8b 100644
--- a/stable/generated/mpas_tools.viz.transects.find_planar_transect_cells_and_weights.html
+++ b/stable/generated/mpas_tools.viz.transects.find_planar_transect_cells_and_weights.html
@@ -147,11 +147,11 @@ <h1>mpas_tools.viz.transects.find_planar_transect_cells_and_weights<a class="hea
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>xTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – The x points defining segments making up the transect</p></li>
-<li><p><strong>yTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – The y points defining segments making up the transect</p></li>
-<li><p><strong>dsTris</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles, the results of calling
+<li><p><strong>xTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – The x points defining segments making up the transect</p></li>
+<li><p><strong>yTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – The y points defining segments making up the transect</p></li>
+<li><p><strong>dsTris</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles, the results of calling
 <cite>:py:func:`mpas_tools.viz.mesh_to_triangles.mesh_to_triangles()</cite></p></li>
-<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A data set with the full MPAS mesh.</p></li>
+<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A data set with the full MPAS mesh.</p></li>
 <li><p><strong>tree</strong> (<em>scipy.spatial.cKDTree</em>) – A tree of edge centers from triangles making up an MPAS mesh, the return
 value from <code class="docutils literal notranslate"><span class="pre">make_triangle_tree()</span></code></p></li>
 <li><p><strong>subdivisionRes</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.12)"><em>float</em></a><em>, </em><em>optional</em>) – Resolution in m to use to subdivide the transect when looking for
diff --git a/stable/generated/mpas_tools.viz.transects.find_transect_cells_and_weights.html b/stable/generated/mpas_tools.viz.transects.find_transect_cells_and_weights.html
index 99750f1b..0e854e08 100644
--- a/stable/generated/mpas_tools.viz.transects.find_transect_cells_and_weights.html
+++ b/stable/generated/mpas_tools.viz.transects.find_transect_cells_and_weights.html
@@ -147,11 +147,11 @@ <h1>mpas_tools.viz.transects.find_transect_cells_and_weights<a class="headerlink
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>lonTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – The longitude of segments making up the transect</p></li>
-<li><p><strong>latTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.1.2.dev0)"><em>xarray.DataArray</em></a>) – The latitude of segments making up the transect</p></li>
-<li><p><strong>dsTris</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles, the results of calling
+<li><p><strong>lonTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – The longitude of segments making up the transect</p></li>
+<li><p><strong>latTransect</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2024.2.1.dev0)"><em>xarray.DataArray</em></a>) – The latitude of segments making up the transect</p></li>
+<li><p><strong>dsTris</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles, the results of calling
 <a class="reference internal" href="mpas_tools.viz.mesh_to_triangles.mesh_to_triangles.html#mpas_tools.viz.mesh_to_triangles.mesh_to_triangles" title="mpas_tools.viz.mesh_to_triangles.mesh_to_triangles"><code class="xref py py-func docutils literal notranslate"><span class="pre">mpas_tools.viz.mesh_to_triangles.mesh_to_triangles()</span></code></a></p></li>
-<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A data set with the full MPAS mesh.</p></li>
+<li><p><strong>dsMesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A data set with the full MPAS mesh.</p></li>
 <li><p><strong>tree</strong> (<em>scipy.spatial.cKDTree</em>) – A tree of edge centers from triangles making up an MPAS mesh, the return
 value from <code class="docutils literal notranslate"><span class="pre">make_triangle_tree()</span></code></p></li>
 <li><p><strong>degrees</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.12)"><em>bool</em></a><em>, </em><em>optional</em>) – Whether <code class="docutils literal notranslate"><span class="pre">lonTransect</span></code> and <code class="docutils literal notranslate"><span class="pre">latTransect</span></code> are in degrees (as opposed
diff --git a/stable/generated/mpas_tools.viz.transects.make_triangle_tree.html b/stable/generated/mpas_tools.viz.transects.make_triangle_tree.html
index c61995e5..2c5130d5 100644
--- a/stable/generated/mpas_tools.viz.transects.make_triangle_tree.html
+++ b/stable/generated/mpas_tools.viz.transects.make_triangle_tree.html
@@ -146,7 +146,7 @@ <h1>mpas_tools.viz.transects.make_triangle_tree<a class="headerlink" href="#mpas
 segments that they might intersect</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
-<dd class="field-odd"><p><strong>dsTris</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles, the results of calling
+<dd class="field-odd"><p><strong>dsTris</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><em>xarray.Dataset</em></a>) – A dataset that defines triangles, the results of calling
 <a class="reference internal" href="mpas_tools.viz.mesh_to_triangles.mesh_to_triangles.html#mpas_tools.viz.mesh_to_triangles.mesh_to_triangles" title="mpas_tools.viz.mesh_to_triangles.mesh_to_triangles"><code class="xref py py-func docutils literal notranslate"><span class="pre">mpas_tools.viz.mesh_to_triangles.mesh_to_triangles()</span></code></a></p>
 </dd>
 <dt class="field-even">Returns<span class="colon">:</span></dt>
diff --git a/stable/mesh_conversion.html b/stable/mesh_conversion.html
index c933a140..d865a82d 100644
--- a/stable/mesh_conversion.html
+++ b/stable/mesh_conversion.html
@@ -319,7 +319,7 @@ <h3>Computing MPAS Region Masks<a class="headerlink" href="#computing-mpas-regio
 <p>The function <a class="reference internal" href="generated/mpas_tools.mesh.mask.compute_mpas_region_masks.html#mpas_tools.mesh.mask.compute_mpas_region_masks" title="mpas_tools.mesh.mask.compute_mpas_region_masks"><code class="xref py py-func docutils literal notranslate"><span class="pre">mpas_tools.mesh.mask.compute_mpas_region_masks()</span></code></a>
 or the <code class="docutils literal notranslate"><span class="pre">compute_mpas_region_masks</span></code> command-line tool can
 be used to create region masks on cells, edges and/or vertices given an MPAS
-mesh <a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.1.2.dev0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">xarray.Dataset</span></code></a> <code class="docutils literal notranslate"><span class="pre">dsMesh</span></code> and a
+mesh <a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2024.2.1.dev0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">xarray.Dataset</span></code></a> <code class="docutils literal notranslate"><span class="pre">dsMesh</span></code> and a
 <a class="reference external" href="http://mpas-dev.github.io/geometric_features/stable/generated/geometric_features.FeatureCollection.html#geometric_features.FeatureCollection" title="(in geometric_features v1.3.0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">geometric_features.FeatureCollection</span></code></a> <code class="docutils literal notranslate"><span class="pre">fcMask</span></code> containing regions.
 The resulting masks, in the variable <code class="docutils literal notranslate"><span class="pre">regionCellMasks</span></code>, are 1 where the center
 of the polygon corresponding to the cell, edge or vertex (see the
diff --git a/stable/searchindex.js b/stable/searchindex.js
index 2f182549..1b02b5fb 100644
--- a/stable/searchindex.js
+++ b/stable/searchindex.js
@@ -1 +1 @@
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"mpas-tools-mesh-interpolation-interp-bilin"]], "mpas_tools.mesh.mask.compute_lon_lat_region_masks": [[48, "mpas-tools-mesh-mask-compute-lon-lat-region-masks"]], "mpas_tools.mesh.mask.compute_mpas_flood_fill_mask": [[49, "mpas-tools-mesh-mask-compute-mpas-flood-fill-mask"]], "mpas_tools.mesh.mask.compute_mpas_region_masks": [[50, "mpas-tools-mesh-mask-compute-mpas-region-masks"]], "mpas_tools.mesh.mask.compute_mpas_transect_masks": [[51, "mpas-tools-mesh-mask-compute-mpas-transect-masks"]], "mpas_tools.ocean.build_mesh": [[52, "module-mpas_tools.ocean.build_mesh"]], "mpas_tools.ocean.build_mesh.build_planar_mesh": [[53, "mpas-tools-ocean-build-mesh-build-planar-mesh"]], "mpas_tools.ocean.build_mesh.build_spherical_mesh": [[54, "mpas-tools-ocean-build-mesh-build-spherical-mesh"]], "mpas_tools.ocean.coastal_tools": [[55, "module-mpas_tools.ocean.coastal_tools"]], "mpas_tools.ocean.coastal_tools.CPP_projection": [[56, "mpas-tools-ocean-coastal-tools-cpp-projection"]], 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"mpas_tools.ocean.coastal_tools.plot_coarse_coast": [[65, "mpas-tools-ocean-coastal-tools-plot-coarse-coast"]], "mpas_tools.ocean.coastal_tools.plot_region_box": [[66, "mpas-tools-ocean-coastal-tools-plot-region-box"]], "mpas_tools.ocean.coastal_tools.save_matfile": [[67, "mpas-tools-ocean-coastal-tools-save-matfile"]], "mpas_tools.ocean.coastal_tools.smooth_coastline": [[68, "mpas-tools-ocean-coastal-tools-smooth-coastline"]], "mpas_tools.ocean.coastline_alteration": [[69, "module-mpas_tools.ocean.coastline_alteration"]], "mpas_tools.ocean.coastline_alteration.add_critical_land_blockages": [[70, "mpas-tools-ocean-coastline-alteration-add-critical-land-blockages"]], "mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask": [[71, "mpas-tools-ocean-coastline-alteration-add-land-locked-cells-to-mask"]], "mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks": [[72, "mpas-tools-ocean-coastline-alteration-widen-transect-edge-masks"]], "mpas_tools.ocean.depth.add_depth": [[73, "mpas-tools-ocean-depth-add-depth"]], "mpas_tools.ocean.depth.add_zmid": [[74, "mpas-tools-ocean-depth-add-zmid"]], "mpas_tools.ocean.depth.compute_depth": [[75, "mpas-tools-ocean-depth-compute-depth"]], "mpas_tools.ocean.depth.compute_zmid": [[76, "mpas-tools-ocean-depth-compute-zmid"]], "mpas_tools.ocean.depth.write_time_varying_zmid": [[77, "mpas-tools-ocean-depth-write-time-varying-zmid"]], "mpas_tools.ocean.inject_bathymetry.inject_bathymetry": [[78, "mpas-tools-ocean-inject-bathymetry-inject-bathymetry"]], "mpas_tools.ocean.inject_meshDensity.inject_meshDensity_from_file": [[79, "mpas-tools-ocean-inject-meshdensity-inject-meshdensity-from-file"]], "mpas_tools.ocean.inject_meshDensity.inject_planar_meshDensity": [[80, "mpas-tools-ocean-inject-meshdensity-inject-planar-meshdensity"]], "mpas_tools.ocean.inject_meshDensity.inject_spherical_meshDensity": [[81, "mpas-tools-ocean-inject-meshdensity-inject-spherical-meshdensity"]], 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Region Masks": [[135, "computing-mpas-region-masks"]], "Computing Transect Masks": [[135, "computing-transect-masks"]], "Computing a Flood-fill Mask": [[135, "computing-a-flood-fill-mask"]], "Computing Lon/Lat Region Masks": [[135, "computing-lon-lat-region-masks"]], "Merging and Splitting": [[135, "merging-and-splitting"]], "Translation": [[135, "translation"]], "Converting Between Mesh Formats": [[135, "converting-between-mesh-formats"]], "MSH to MPAS NetCDF": [[135, "msh-to-mpas-netcdf"]], "Triangle to MPAS NetCDF": [[135, "triangle-to-mpas-netcdf"]], "MPAS NetCDF to Triangle": [[135, "mpas-netcdf-to-triangle"]], "MPAS NetCDF to SCRIP": [[135, "mpas-netcdf-to-scrip"]], "Mesh Creation": [[136, "id1"]], "Uniform, Planar Meshes": [[136, "uniform-planar-meshes"]], "Building a JIGSAW Mesh": [[136, "building-a-jigsaw-mesh"]], "Spherical Meshes": [[136, "spherical-meshes"]], "Planar Meshes": [[136, "planar-meshes"]], "JIGSAW Driver": [[136, "jigsaw-driver"]], "Mesh Definition Tools": [[136, "mesh-definition-tools"]], "Merging Cell Widths": [[136, "merging-cell-widths"]], "Defining an Eddy-closure Mesh": [[136, "defining-an-eddy-closure-mesh"]], "Defining a Rossby-radius Mesh": [[136, "defining-a-rossby-radius-mesh"]], "Defining an Atlantic/Pacific Mesh": [[136, "defining-an-atlantic-pacific-mesh"]], "Signed Distance Functions": [[136, "signed-distance-functions"]], "Coastal Tools": [[137, "coastal-tools"]], "Refining a Mesh": [[137, "refining-a-mesh"]], "Creating a Background Mesh": [[137, "creating-a-background-mesh"]], "Extracting Coastlines": [[137, "extracting-coastlines"]], "Computing Distance to Coast": [[137, "computing-distance-to-coast"]], "Blending Cell Widths": [[137, "blending-cell-widths"]], "Regions": [[137, "regions"]], "Coastline Alteration": [[138, "coastline-alteration"]], "Adding Land Blockages": [[138, "adding-land-blockages"]], "Masking Land-locked Cells": [[138, "masking-land-locked-cells"]], "Widening Transects": [[138, "widening-transects"]], "Adding a Depth Coordinate": [[139, "adding-a-depth-coordinate"]], "Adding a 1D depth coordinate": [[139, "adding-a-1d-depth-coordinate"]], "Adding a 3D zMid coordinate": [[139, "adding-a-3d-zmid-coordinate"]], "Writing a time-dependent, 3D zMid variable": [[139, "writing-a-time-dependent-3d-zmid-variable"]], "Ocean Mesh Creation": [[140, "ocean-mesh-creation"]], "Meridional Overturning Circulation": [[141, "meridional-overturning-circulation"]], "Building MOC Basins": [[141, "building-moc-basins"]], "Adding Southern Transects": [[141, "adding-southern-transects"]], "Building MOC Basins and Transects Together": [[141, "building-moc-basins-and-transects-together"]], "Plotting Ocean Transects": [[142, "plotting-ocean-transects"]], "Mask": [[143, "mask"]], "Extending a Mask": [[143, "extending-a-mask"]], "Mesh": [[144, "mesh"]], "MPAS-Seaice SCRIP files": [[144, "mpas-seaice-scrip-files"]], "SCRIP files for 2D grids": [[144, "scrip-files-for-2d-grids"]], "Graph partitioning": [[145, "graph-partitioning"]], "Running from compass": [[145, "running-from-compass"]], "Conda environment": [[145, "conda-environment"]], "Graph partition tools": [[145, "graph-partition-tools"]], "Graph partition function": [[145, "graph-partition-function"]], "Region masks": [[146, "region-masks"]], "Make a region mask for partitioning": [[146, "make-a-region-mask-for-partitioning"]], "Regrid": [[147, "regrid"]], "Regridding between MPAS-Seaice meshes": [[147, "regridding-between-mpas-seaice-meshes"]], "Testing Changes to mpas_tools": [[148, "testing-changes-to-mpas-tools"]], "Removing the test environment": [[148, "removing-the-test-environment"]], "Subdividing transects": [[149, "subdividing-transects"]], "Low-level functions": [[149, "low-level-functions"]], "Vector Operations": [[150, "vector-operations"]], "Vector Class": [[150, "vector-class"]], "Vector Reconstructions": [[150, "vector-reconstructions"]], "ParaView VTK Extractor": [[152, "paraview-vtk-extractor"]], "Extracting a Temperature Time-series": [[152, "extracting-a-temperature-time-series"]], "Extracting Multiple Fields": [[152, "extracting-multiple-fields"]], "Extracting \u201cAll\u201d Fields": [[152, "extracting-all-fields"]], "Indexing Dimensions": [[152, "indexing-dimensions"]], "Indexing Time": [[152, "indexing-time"]], "Ignoring Time": [[152, "ignoring-time"]], "Lon/Lat Coordinates": [[152, "lon-lat-coordinates"]], "Topographic Data": [[152, "topographic-data"]], "Extracting a Region": [[152, "extracting-a-region"]], "ParaView Macros": [[152, "paraview-macros"]], "MPAS Mesh to Triangles": [[152, "mpas-mesh-to-triangles"]], "Colormaps": [[152, "colormaps"]]}, "indexentries": {"module": [[5, "module-mpas_tools.cime.constants"], [31, "module-mpas_tools.mesh.creation.build_mesh"], [36, "module-mpas_tools.mesh.creation.mesh_definition_tools"], [42, "module-mpas_tools.mesh.creation.signed_distance"], [52, "module-mpas_tools.ocean.build_mesh"], [55, "module-mpas_tools.ocean.coastal_tools"], [69, "module-mpas_tools.ocean.coastline_alteration"], [83, "module-mpas_tools.ocean.moc"]], "mpas_tools.cime.constants": [[5, "module-mpas_tools.cime.constants"]], "mpasconfigparser (class in mpas_tools.config)": [[6, "mpas_tools.config.MpasConfigParser"]], "__init__() (mpas_tools.config.mpasconfigparser method)": [[6, "mpas_tools.config.MpasConfigParser.__init__"]], "__getitem__() (mpas_tools.config.mpasconfigparser method)": [[7, "mpas_tools.config.MpasConfigParser.__getitem__"]], "add_from_file() (mpas_tools.config.mpasconfigparser method)": [[8, "mpas_tools.config.MpasConfigParser.add_from_file"]], "add_from_package() (mpas_tools.config.mpasconfigparser method)": [[9, "mpas_tools.config.MpasConfigParser.add_from_package"]], "add_user_config() (mpas_tools.config.mpasconfigparser method)": [[10, "mpas_tools.config.MpasConfigParser.add_user_config"]], "append() (mpas_tools.config.mpasconfigparser method)": [[11, 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method)": [[20, "mpas_tools.config.MpasConfigParser.has_section"]], "prepend() (mpas_tools.config.mpasconfigparser method)": [[21, "mpas_tools.config.MpasConfigParser.prepend"]], "set() (mpas_tools.config.mpasconfigparser method)": [[22, "mpas_tools.config.MpasConfigParser.set"]], "write() (mpas_tools.config.mpasconfigparser method)": [[23, "mpas_tools.config.MpasConfigParser.write"]], "write_netcdf() (in module mpas_tools.io)": [[24, "mpas_tools.io.write_netcdf"]], "loggingcontext (class in mpas_tools.logging)": [[25, "mpas_tools.logging.LoggingContext"]], "__init__() (mpas_tools.logging.loggingcontext method)": [[25, "mpas_tools.logging.LoggingContext.__init__"]], "check_call() (in module mpas_tools.logging)": [[26, "mpas_tools.logging.check_call"]], "merge_grids() (in module mpas_tools.merge_grids)": [[27, "mpas_tools.merge_grids.merge_grids"]], "convert() (in module mpas_tools.mesh.conversion)": [[28, "mpas_tools.mesh.conversion.convert"]], "cull() (in module mpas_tools.mesh.conversion)": [[29, "mpas_tools.mesh.conversion.cull"]], "mask() (in module mpas_tools.mesh.conversion)": [[30, "mpas_tools.mesh.conversion.mask"]], "mpas_tools.mesh.creation.build_mesh": [[31, "module-mpas_tools.mesh.creation.build_mesh"]], "build_planar_mesh() (in module mpas_tools.mesh.creation.build_mesh)": [[32, "mpas_tools.mesh.creation.build_mesh.build_planar_mesh"]], "build_spherical_mesh() (in module mpas_tools.mesh.creation.build_mesh)": [[33, "mpas_tools.mesh.creation.build_mesh.build_spherical_mesh"]], "jigsaw_driver() (in module mpas_tools.mesh.creation.jigsaw_driver)": [[34, "mpas_tools.mesh.creation.jigsaw_driver.jigsaw_driver"]], "jigsaw_to_netcdf() (in module mpas_tools.mesh.creation.jigsaw_to_netcdf)": [[35, "mpas_tools.mesh.creation.jigsaw_to_netcdf.jigsaw_to_netcdf"]], "mpas_tools.mesh.creation.mesh_definition_tools": [[36, "module-mpas_tools.mesh.creation.mesh_definition_tools"]], "atlanticpacificgrid() (in module mpas_tools.mesh.creation.mesh_definition_tools)": [[37, "mpas_tools.mesh.creation.mesh_definition_tools.AtlanticPacificGrid"]], "ec_cellwidthvslat() (in module mpas_tools.mesh.creation.mesh_definition_tools)": [[38, "mpas_tools.mesh.creation.mesh_definition_tools.EC_CellWidthVsLat"]], "rrs_cellwidthvslat() (in module mpas_tools.mesh.creation.mesh_definition_tools)": [[39, "mpas_tools.mesh.creation.mesh_definition_tools.RRS_CellWidthVsLat"]], "mergecellwidthvslat() (in module mpas_tools.mesh.creation.mesh_definition_tools)": [[40, "mpas_tools.mesh.creation.mesh_definition_tools.mergeCellWidthVsLat"]], "mpas_to_triangle() (in module mpas_tools.mesh.creation.mpas_to_triangle)": [[41, "mpas_tools.mesh.creation.mpas_to_triangle.mpas_to_triangle"]], "mpas_tools.mesh.creation.signed_distance": [[42, "module-mpas_tools.mesh.creation.signed_distance"]], "distance_from_geojson() (in module mpas_tools.mesh.creation.signed_distance)": [[43, "mpas_tools.mesh.creation.signed_distance.distance_from_geojson"]], "mask_from_geojson() (in module mpas_tools.mesh.creation.signed_distance)": [[44, "mpas_tools.mesh.creation.signed_distance.mask_from_geojson"]], "signed_distance_from_geojson() (in module mpas_tools.mesh.creation.signed_distance)": [[45, "mpas_tools.mesh.creation.signed_distance.signed_distance_from_geojson"]], "triangle_to_netcdf() (in module mpas_tools.mesh.creation.triangle_to_netcdf)": [[46, "mpas_tools.mesh.creation.triangle_to_netcdf.triangle_to_netcdf"]], "interp_bilin() (in module mpas_tools.mesh.interpolation)": [[47, "mpas_tools.mesh.interpolation.interp_bilin"]], "compute_lon_lat_region_masks() (in module mpas_tools.mesh.mask)": [[48, "mpas_tools.mesh.mask.compute_lon_lat_region_masks"]], "compute_mpas_flood_fill_mask() (in module mpas_tools.mesh.mask)": [[49, "mpas_tools.mesh.mask.compute_mpas_flood_fill_mask"]], "compute_mpas_region_masks() (in module mpas_tools.mesh.mask)": [[50, "mpas_tools.mesh.mask.compute_mpas_region_masks"]], "compute_mpas_transect_masks() (in module mpas_tools.mesh.mask)": [[51, "mpas_tools.mesh.mask.compute_mpas_transect_masks"]], "mpas_tools.ocean.build_mesh": [[52, "module-mpas_tools.ocean.build_mesh"]], "build_planar_mesh() (in module mpas_tools.ocean.build_mesh)": [[53, "mpas_tools.ocean.build_mesh.build_planar_mesh"]], "build_spherical_mesh() (in module mpas_tools.ocean.build_mesh)": [[54, "mpas_tools.ocean.build_mesh.build_spherical_mesh"]], "mpas_tools.ocean.coastal_tools": [[55, "module-mpas_tools.ocean.coastal_tools"]], "cpp_projection() (in module mpas_tools.ocean.coastal_tools)": [[56, "mpas_tools.ocean.coastal_tools.CPP_projection"]], "coastal_refined_mesh() (in module mpas_tools.ocean.coastal_tools)": [[57, "mpas_tools.ocean.coastal_tools.coastal_refined_mesh"]], "compute_cell_width() (in module mpas_tools.ocean.coastal_tools)": [[58, "mpas_tools.ocean.coastal_tools.compute_cell_width"]], "create_background_mesh() (in module mpas_tools.ocean.coastal_tools)": [[59, "mpas_tools.ocean.coastal_tools.create_background_mesh"]], "distance_to_coast() (in module mpas_tools.ocean.coastal_tools)": [[60, "mpas_tools.ocean.coastal_tools.distance_to_coast"]], "extract_coastlines() (in module mpas_tools.ocean.coastal_tools)": [[61, "mpas_tools.ocean.coastal_tools.extract_coastlines"]], "get_convex_hull_coordinates() (in module mpas_tools.ocean.coastal_tools)": [[62, "mpas_tools.ocean.coastal_tools.get_convex_hull_coordinates"]], "get_data_inside_box() (in module mpas_tools.ocean.coastal_tools)": [[63, "mpas_tools.ocean.coastal_tools.get_data_inside_box"]], "get_indices_inside_quad() (in module mpas_tools.ocean.coastal_tools)": [[64, "mpas_tools.ocean.coastal_tools.get_indices_inside_quad"]], "plot_coarse_coast() (in module mpas_tools.ocean.coastal_tools)": [[65, "mpas_tools.ocean.coastal_tools.plot_coarse_coast"]], "plot_region_box() (in module mpas_tools.ocean.coastal_tools)": [[66, "mpas_tools.ocean.coastal_tools.plot_region_box"]], "save_matfile() (in module mpas_tools.ocean.coastal_tools)": [[67, "mpas_tools.ocean.coastal_tools.save_matfile"]], "smooth_coastline() (in module mpas_tools.ocean.coastal_tools)": [[68, "mpas_tools.ocean.coastal_tools.smooth_coastline"]], "mpas_tools.ocean.coastline_alteration": [[69, "module-mpas_tools.ocean.coastline_alteration"]], "add_critical_land_blockages() (in module mpas_tools.ocean.coastline_alteration)": [[70, "mpas_tools.ocean.coastline_alteration.add_critical_land_blockages"]], "add_land_locked_cells_to_mask() (in module mpas_tools.ocean.coastline_alteration)": [[71, "mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask"]], "widen_transect_edge_masks() (in module mpas_tools.ocean.coastline_alteration)": [[72, "mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks"]], "add_depth() (in module mpas_tools.ocean.depth)": [[73, "mpas_tools.ocean.depth.add_depth"]], "add_zmid() (in module mpas_tools.ocean.depth)": [[74, "mpas_tools.ocean.depth.add_zmid"]], "compute_depth() (in module mpas_tools.ocean.depth)": [[75, "mpas_tools.ocean.depth.compute_depth"]], "compute_zmid() (in module mpas_tools.ocean.depth)": [[76, "mpas_tools.ocean.depth.compute_zmid"]], "write_time_varying_zmid() (in module mpas_tools.ocean.depth)": [[77, "mpas_tools.ocean.depth.write_time_varying_zmid"]], "inject_bathymetry() (in module mpas_tools.ocean.inject_bathymetry)": [[78, "mpas_tools.ocean.inject_bathymetry.inject_bathymetry"]], "inject_meshdensity_from_file() (in module mpas_tools.ocean.inject_meshdensity)": [[79, "mpas_tools.ocean.inject_meshDensity.inject_meshDensity_from_file"]], "inject_planar_meshdensity() (in module mpas_tools.ocean.inject_meshdensity)": [[80, "mpas_tools.ocean.inject_meshDensity.inject_planar_meshDensity"]], "inject_spherical_meshdensity() (in module mpas_tools.ocean.inject_meshdensity)": [[81, "mpas_tools.ocean.inject_meshDensity.inject_spherical_meshDensity"]], "inject_preserve_floodplain() (in module mpas_tools.ocean.inject_preserve_floodplain)": [[82, "mpas_tools.ocean.inject_preserve_floodplain.inject_preserve_floodplain"]], "mpas_tools.ocean.moc": [[83, "module-mpas_tools.ocean.moc"]], "add_moc_southern_boundary_transects() (in module mpas_tools.ocean.moc)": [[84, "mpas_tools.ocean.moc.add_moc_southern_boundary_transects"]], "make_moc_basins_and_transects() (in module mpas_tools.ocean.moc)": [[85, "mpas_tools.ocean.moc.make_moc_basins_and_transects"]], "find_transect_levels_and_weights() (in module mpas_tools.ocean.transects)": [[86, "mpas_tools.ocean.transects.find_transect_levels_and_weights"]], "get_outline_segments() (in module mpas_tools.ocean.transects)": [[87, "mpas_tools.ocean.transects.get_outline_segments"]], "interp_mpas_to_transect_triangle_nodes() (in module mpas_tools.ocean.transects)": [[88, "mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes"]], "interp_mpas_to_transect_triangles() (in module mpas_tools.ocean.transects)": [[89, "mpas_tools.ocean.transects.interp_mpas_to_transect_triangles"]], "interp_transect_grid_to_transect_triangle_nodes() (in module mpas_tools.ocean.transects)": [[90, "mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes"]], "add_inset() (in module mpas_tools.ocean.viz)": [[91, "mpas_tools.ocean.viz.add_inset"]], "plot_ocean_transects() (in module mpas_tools.ocean.viz)": [[92, "mpas_tools.ocean.viz.plot_ocean_transects"]], "create_pool() (in module mpas_tools.parallel)": [[93, "mpas_tools.parallel.create_pool"]], "make_planar_hex_mesh() (in module mpas_tools.planar_hex)": [[94, "mpas_tools.planar_hex.make_planar_hex_mesh"]], "scrip_from_mpas() (in module mpas_tools.scrip.from_mpas)": [[95, "mpas_tools.scrip.from_mpas.scrip_from_mpas"]], "extend_seaice_mask() (in module mpas_tools.seaice.mask)": [[96, "mpas_tools.seaice.mask.extend_seaice_mask"]], "make_mpas_scripfile_on_cells() (in module mpas_tools.seaice.mesh)": [[97, "mpas_tools.seaice.mesh.make_mpas_scripfile_on_cells"]], "make_mpas_scripfile_on_vertices() (in module mpas_tools.seaice.mesh)": [[98, "mpas_tools.seaice.mesh.make_mpas_scripfile_on_vertices"]], "write_2d_scripfile() (in module mpas_tools.seaice.mesh)": [[99, "mpas_tools.seaice.mesh.write_2D_scripfile"]], "write_scrip_file() (in module mpas_tools.seaice.mesh)": [[100, "mpas_tools.seaice.mesh.write_scrip_file"]], "create_partitions() (in module mpas_tools.seaice.partition)": [[101, "mpas_tools.seaice.partition.create_partitions"]], "gen_seaice_mesh_partition() (in module mpas_tools.seaice.partition)": [[102, "mpas_tools.seaice.partition.gen_seaice_mesh_partition"]], "prepare_partitions() (in module mpas_tools.seaice.partition)": [[103, "mpas_tools.seaice.partition.prepare_partitions"]], "make_regions_file() (in module mpas_tools.seaice.regions)": [[104, "mpas_tools.seaice.regions.make_regions_file"]], "regrid_to_other_mesh() (in module mpas_tools.seaice.regrid)": [[105, "mpas_tools.seaice.regrid.regrid_to_other_mesh"]], "split_grids() (in module mpas_tools.split_grids)": [[106, "mpas_tools.split_grids.split_grids"]], "test_cime_constants() (in module mpas_tools.tests.test_cime_constants)": [[107, "mpas_tools.tests.test_cime_constants.test_cime_constants"]], "cartesian_to_great_circle_distance() (in module mpas_tools.transects)": [[108, "mpas_tools.transects.cartesian_to_great_circle_distance"]], "cartesian_to_lon_lat() (in module mpas_tools.transects)": [[109, "mpas_tools.transects.cartesian_to_lon_lat"]], "lon_lat_to_cartesian() (in module mpas_tools.transects)": [[110, "mpas_tools.transects.lon_lat_to_cartesian"]], "subdivide_great_circle() (in module mpas_tools.transects)": [[111, "mpas_tools.transects.subdivide_great_circle"]], "subdivide_planar() (in module mpas_tools.transects)": [[112, "mpas_tools.transects.subdivide_planar"]], "center() (in module mpas_tools.translate)": [[113, "mpas_tools.translate.center"]], "center_on_mesh() (in module mpas_tools.translate)": [[114, "mpas_tools.translate.center_on_mesh"]], "translate() (in module mpas_tools.translate)": [[115, "mpas_tools.translate.translate"]], "vector (class in mpas_tools.vector)": [[116, "mpas_tools.vector.Vector"]], "__init__() (mpas_tools.vector.vector method)": [[116, "mpas_tools.vector.Vector.__init__"]], "angular_distance() (mpas_tools.vector.vector method)": [[117, "mpas_tools.vector.Vector.angular_distance"]], "cross() (mpas_tools.vector.vector method)": [[118, "mpas_tools.vector.Vector.cross"]], "det() (mpas_tools.vector.vector static method)": [[119, "mpas_tools.vector.Vector.det"]], "dot() (mpas_tools.vector.vector method)": [[120, "mpas_tools.vector.Vector.dot"]], "intersection() (mpas_tools.vector.vector static method)": [[121, "mpas_tools.vector.Vector.intersection"]], "intersects() (mpas_tools.vector.vector static method)": [[122, "mpas_tools.vector.Vector.intersects"]], "mag() (mpas_tools.vector.vector method)": [[123, "mpas_tools.vector.Vector.mag"]], "straddles() (mpas_tools.vector.vector static method)": [[124, "mpas_tools.vector.Vector.straddles"]], "register_sci_viz_colormaps() (in module mpas_tools.viz.colormaps)": [[125, "mpas_tools.viz.colormaps.register_sci_viz_colormaps"]], "mesh_to_triangles() (in module mpas_tools.viz.mesh_to_triangles)": [[126, "mpas_tools.viz.mesh_to_triangles.mesh_to_triangles"]], "extract_vtk() (in module mpas_tools.viz.paraview_extractor)": [[127, "mpas_tools.viz.paraview_extractor.extract_vtk"]], "find_planar_transect_cells_and_weights() (in module mpas_tools.viz.transects)": [[128, "mpas_tools.viz.transects.find_planar_transect_cells_and_weights"]], "find_transect_cells_and_weights() (in module mpas_tools.viz.transects)": [[129, "mpas_tools.viz.transects.find_transect_cells_and_weights"]], "make_triangle_tree() (in module mpas_tools.viz.transects)": [[130, "mpas_tools.viz.transects.make_triangle_tree"]]}})
\ No newline at end of file
+Search.setIndex({"docnames": ["api", "authors", "building_docs", "cime", "config", "generated/mpas_tools.cime.constants", "generated/mpas_tools.config.MpasConfigParser", "generated/mpas_tools.config.MpasConfigParser.__getitem__", "generated/mpas_tools.config.MpasConfigParser.add_from_file", "generated/mpas_tools.config.MpasConfigParser.add_from_package", "generated/mpas_tools.config.MpasConfigParser.add_user_config", "generated/mpas_tools.config.MpasConfigParser.append", "generated/mpas_tools.config.MpasConfigParser.copy", "generated/mpas_tools.config.MpasConfigParser.get", "generated/mpas_tools.config.MpasConfigParser.getboolean", "generated/mpas_tools.config.MpasConfigParser.getexpression", "generated/mpas_tools.config.MpasConfigParser.getfloat", "generated/mpas_tools.config.MpasConfigParser.getint", "generated/mpas_tools.config.MpasConfigParser.getlist", "generated/mpas_tools.config.MpasConfigParser.has_option", "generated/mpas_tools.config.MpasConfigParser.has_section", "generated/mpas_tools.config.MpasConfigParser.prepend", "generated/mpas_tools.config.MpasConfigParser.set", "generated/mpas_tools.config.MpasConfigParser.write", "generated/mpas_tools.io.write_netcdf", "generated/mpas_tools.logging.LoggingContext", "generated/mpas_tools.logging.check_call", "generated/mpas_tools.merge_grids.merge_grids", "generated/mpas_tools.mesh.conversion.convert", "generated/mpas_tools.mesh.conversion.cull", "generated/mpas_tools.mesh.conversion.mask", "generated/mpas_tools.mesh.creation.build_mesh", "generated/mpas_tools.mesh.creation.build_mesh.build_planar_mesh", "generated/mpas_tools.mesh.creation.build_mesh.build_spherical_mesh", "generated/mpas_tools.mesh.creation.jigsaw_driver.jigsaw_driver", "generated/mpas_tools.mesh.creation.jigsaw_to_netcdf.jigsaw_to_netcdf", "generated/mpas_tools.mesh.creation.mesh_definition_tools", "generated/mpas_tools.mesh.creation.mesh_definition_tools.AtlanticPacificGrid", "generated/mpas_tools.mesh.creation.mesh_definition_tools.EC_CellWidthVsLat", "generated/mpas_tools.mesh.creation.mesh_definition_tools.RRS_CellWidthVsLat", "generated/mpas_tools.mesh.creation.mesh_definition_tools.mergeCellWidthVsLat", "generated/mpas_tools.mesh.creation.mpas_to_triangle.mpas_to_triangle", "generated/mpas_tools.mesh.creation.signed_distance", "generated/mpas_tools.mesh.creation.signed_distance.distance_from_geojson", "generated/mpas_tools.mesh.creation.signed_distance.mask_from_geojson", "generated/mpas_tools.mesh.creation.signed_distance.signed_distance_from_geojson", "generated/mpas_tools.mesh.creation.triangle_to_netcdf.triangle_to_netcdf", "generated/mpas_tools.mesh.interpolation.interp_bilin", "generated/mpas_tools.mesh.mask.compute_lon_lat_region_masks", "generated/mpas_tools.mesh.mask.compute_mpas_flood_fill_mask", "generated/mpas_tools.mesh.mask.compute_mpas_region_masks", "generated/mpas_tools.mesh.mask.compute_mpas_transect_masks", "generated/mpas_tools.ocean.build_mesh", "generated/mpas_tools.ocean.build_mesh.build_planar_mesh", "generated/mpas_tools.ocean.build_mesh.build_spherical_mesh", "generated/mpas_tools.ocean.coastal_tools", "generated/mpas_tools.ocean.coastal_tools.CPP_projection", "generated/mpas_tools.ocean.coastal_tools.coastal_refined_mesh", "generated/mpas_tools.ocean.coastal_tools.compute_cell_width", "generated/mpas_tools.ocean.coastal_tools.create_background_mesh", "generated/mpas_tools.ocean.coastal_tools.distance_to_coast", "generated/mpas_tools.ocean.coastal_tools.extract_coastlines", "generated/mpas_tools.ocean.coastal_tools.get_convex_hull_coordinates", "generated/mpas_tools.ocean.coastal_tools.get_data_inside_box", "generated/mpas_tools.ocean.coastal_tools.get_indices_inside_quad", "generated/mpas_tools.ocean.coastal_tools.plot_coarse_coast", "generated/mpas_tools.ocean.coastal_tools.plot_region_box", "generated/mpas_tools.ocean.coastal_tools.save_matfile", "generated/mpas_tools.ocean.coastal_tools.smooth_coastline", "generated/mpas_tools.ocean.coastline_alteration", "generated/mpas_tools.ocean.coastline_alteration.add_critical_land_blockages", "generated/mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask", "generated/mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks", "generated/mpas_tools.ocean.depth.add_depth", "generated/mpas_tools.ocean.depth.add_zmid", "generated/mpas_tools.ocean.depth.compute_depth", "generated/mpas_tools.ocean.depth.compute_zmid", "generated/mpas_tools.ocean.depth.write_time_varying_zmid", "generated/mpas_tools.ocean.inject_bathymetry.inject_bathymetry", "generated/mpas_tools.ocean.inject_meshDensity.inject_meshDensity_from_file", "generated/mpas_tools.ocean.inject_meshDensity.inject_planar_meshDensity", "generated/mpas_tools.ocean.inject_meshDensity.inject_spherical_meshDensity", "generated/mpas_tools.ocean.inject_preserve_floodplain.inject_preserve_floodplain", "generated/mpas_tools.ocean.moc", "generated/mpas_tools.ocean.moc.add_moc_southern_boundary_transects", "generated/mpas_tools.ocean.moc.make_moc_basins_and_transects", "generated/mpas_tools.ocean.transects.find_transect_levels_and_weights", "generated/mpas_tools.ocean.transects.get_outline_segments", "generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes", "generated/mpas_tools.ocean.transects.interp_mpas_to_transect_triangles", "generated/mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes", "generated/mpas_tools.ocean.viz.add_inset", "generated/mpas_tools.ocean.viz.plot_ocean_transects", "generated/mpas_tools.parallel.create_pool", "generated/mpas_tools.planar_hex.make_planar_hex_mesh", "generated/mpas_tools.scrip.from_mpas.scrip_from_mpas", "generated/mpas_tools.seaice.mask.extend_seaice_mask", "generated/mpas_tools.seaice.mesh.make_mpas_scripfile_on_cells", "generated/mpas_tools.seaice.mesh.make_mpas_scripfile_on_vertices", 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50, 51, 57, 58, 59, 60, 61, 70, 71, 72, 75, 76, 84, 85, 86, 88, 89, 90, 91, 93, 94, 108, 111, 112, 117, 118, 119, 120, 121, 122, 123, 124, 126, 128, 129, 130, 135, 136, 141], "section_proxi": 7, "sectionproxi": 7, "filenam": [8, 10, 24, 96, 104, 127, 135, 142, 145, 152], "file": [8, 9, 10, 15, 22, 23, 24, 25, 27, 28, 29, 30, 32, 33, 35, 41, 46, 53, 54, 58, 59, 60, 61, 73, 74, 77, 79, 80, 81, 85, 94, 95, 96, 97, 98, 99, 100, 102, 104, 106, 127, 131, 133, 134, 135, 136, 137, 139, 140, 141, 142, 145, 148, 150, 152], "rel": [8, 10, 28, 29, 135, 136, 145, 152], "absolut": [8, 10, 28, 29, 145], "config_filenam": 9, "bool": [9, 14, 15, 19, 20, 22, 23, 26, 33, 35, 48, 50, 51, 53, 54, 58, 59, 60, 61, 79, 94, 95, 96, 99, 102, 126, 127, 129], "whether": [9, 19, 20, 22, 23, 26, 33, 34, 35, 48, 50, 51, 53, 54, 58, 59, 60, 61, 79, 92, 95, 96, 99, 102, 126, 127, 129, 135, 137, 140], "isn": [9, 135], "t": [9, 96, 134, 135, 136, 142, 145], "These": [10, 36, 131, 134, 135, 136, 137, 144, 149, 152], 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132, 134, 135, 136], "If": [15, 25, 26, 33, 35, 43, 45, 47, 51, 54, 57, 86, 91, 127, 133, 134, 135, 136, 137, 140, 142, 148, 152], "suppli": [15, 22, 25, 94, 127, 133, 135, 137, 150, 152], "element": [15, 18, 46, 121, 122, 124], "cast": 15, "ensur": [15, 91], "rather": [15, 23, 96, 127, 135, 152], "than": [15, 23, 91, 96, 127, 135, 136, 145, 152], "distinct": 15, "import": [15, 132, 133, 135, 136, 137, 138, 141, 148, 152], "evalu": 15, "referenc": 15, "either": [15, 25, 30, 61, 104, 116, 121, 122, 124, 127, 133, 135, 136, 137, 152], "np": [15, 132, 136, 137], "wa": [19, 20, 22, 23, 145], "call": [22, 25, 26, 57, 58, 59, 60, 61, 86, 88, 89, 90, 93, 121, 128, 129, 130, 131, 134, 135, 136, 137, 138, 139, 141, 145, 148, 150, 152], "retain": [22, 137], "through": [22, 137, 145, 149, 152], "command": [22, 24, 26, 27, 106, 134, 135, 136, 141, 142, 148, 150, 152], "flag": [22, 135, 141], "fp": 23, "include_sourc": 23, "include_com": 23, "raw": 23, "pointer": 23, "testio": 23, "indic": [23, 58, 59, 60, 61, 86, 121, 122, 124, 126, 127, 128, 129, 134, 135, 137, 138, 139, 141, 145, 152], "defin": [23, 32, 34, 35, 36, 46, 53, 58, 59, 70, 72, 75, 76, 79, 80, 81, 84, 85, 86, 88, 89, 90, 102, 119, 126, 127, 128, 129, 130, 132, 134, 135, 137, 141, 149, 150, 152], "extend": [23, 96, 131, 152], "interpol": [23, 86, 88, 89, 90, 111, 112, 126, 128, 129, 131, 135, 152], "d": [24, 58, 60, 92, 132, 135, 136, 137, 145, 152], "fillvalu": 24, "format": [24, 35, 41, 46, 61, 94, 131, 133, 137, 141, 152], "engin": [24, 94], "char_dim_nam": 24, "xarrai": [24, 28, 29, 30, 48, 49, 50, 51, 70, 71, 72, 75, 76, 84, 86, 88, 89, 90, 92, 94, 113, 114, 115, 126, 128, 129, 130, 133, 135, 136, 138, 141, 152], "dataset": [24, 28, 29, 30, 48, 49, 50, 51, 53, 54, 61, 70, 71, 72, 84, 86, 88, 89, 90, 92, 94, 113, 114, 115, 126, 128, 129, 130, 132, 135, 136, 137, 141, 152], "netcdf4": [24, 94, 132], "fill": [24, 49, 152], "dimens": [24, 76, 86, 88, 89, 90, 94, 106, 127, 135, 142], "time": [24, 58, 59, 60, 61, 74, 76, 77, 127, 131, 135, 136, 137, 142, 145, 150], "histori": [24, 27, 106, 135], "attribut": [24, 25, 27, 97, 98, 99, 100, 106, 121, 122, 124, 135], "save": [24, 28, 29, 59, 94, 106, 135, 136, 137, 145, 150], "netcdf": [24, 35, 41, 46, 61, 94, 95, 102, 104, 127, 133, 137, 145, 150], "default_fil": 24, "default_fillv": 24, "netcdf4_class": [24, 94], "netcdf3_64bit": [24, 94], "netcdf3_class": [24, 94], "default_format": 24, "scipi": [24, 94, 128, 129, 130, 132], "h5netcdf": [24, 94], "librari": [24, 94, 135, 136], "output": [24, 25, 26, 28, 29, 30, 32, 33, 34, 35, 41, 46, 48, 49, 50, 51, 53, 54, 73, 74, 77, 84, 85, 86, 94, 95, 127, 133, 135, 141, 145, 150, 152], "to_netcdf": 24, "depend": [24, 127, 131, 133, 142, 152], "overrid": 24, "default_engin": 24, "let": 24, "figur": [24, 91, 142, 152], "default_char_dim_nam": 24, "strlen": 24, "logger": [25, 26, 28, 29, 30, 32, 33, 34, 48, 49, 50, 51, 53, 54, 84, 85, 133, 135], "log_filenam": [25, 133], "context": [25, 133, 139], "manag": 25, "creat": [25, 30, 38, 39, 48, 49, 50, 51, 57, 59, 84, 93, 95, 101, 102, 106, 131, 133, 134, 135, 136, 138, 140, 143, 144, 145, 146, 148, 149, 152], "send": 25, "stdout": [25, 28, 29, 30, 32, 33, 34, 48, 49, 50, 51, 53, 54, 84, 85, 133, 135], "stderr": [25, 133, 135], "anyth": 25, "els": 25, "just": [25, 133, 134, 136, 142, 152], "uniqu": [25, 58, 59, 60, 61, 133], "__name__": [25, 133, 136], "goe": 25, "arg": [26, 134], "log_command": 26, "timeout": 26, "kwarg": 26, "subprocess": [26, 131], "pass": [26, 47, 51, 86, 127, 133, 135, 137, 145, 152], "shell": 26, "ot": [26, 136], "keyword": 26, "popen": 26, "calledprocesserror": 26, "nonzero": 26, "statu": 26, "infile1": [27, 135], "infile2": [27, 135], "outfil": [27, 106, 135], "runner": [27, 106], "merg": [27, 29, 106, 131, 138, 141], "two": [27, 37, 40, 72, 106, 128, 129, 135, 136, 138, 140, 152], "non": [27, 94, 106, 135, 136], "contigu": [27, 49, 106, 135], "mesh": [27, 53, 54, 57, 58, 59, 60, 61, 71, 79, 80, 81, 84, 85, 86, 90, 92, 94, 95, 96, 102, 104, 106, 113, 114, 115, 126, 127, 128, 129, 130, 131, 132, 133, 138, 139, 141, 142, 145, 149, 150], "togeth": [27, 29, 60, 106, 127, 131, 135, 152], "global": [27, 38, 39, 40, 106, 135, 137, 141], "dsin": [28, 29], "graphinfofilenam": [28, 29, 135], "dir": [28, 29, 30, 33, 85, 133], "mpasmeshconvert": [28, 135, 136], "input": [28, 29, 36, 47, 58, 73, 74, 77, 135, 137, 141, 145, 150, 152], "fulli": 28, "compliant": 28, "io": [28, 133, 135, 136, 141], "meshspec": 28, "pdf": 28, "data": [28, 29, 35, 44, 46, 53, 54, 63, 71, 76, 86, 88, 89, 90, 94, 126, 127, 128, 129, 135, 136, 137, 139, 140, 141, 142, 149], "info": [28, 29, 133, 135, 145], "By": [28, 29, 127, 134, 137, 138, 152], "log": [28, 29, 30, 32, 33, 34, 48, 49, 50, 51, 53, 54, 84, 85, 127, 131, 135, 136], "directori": [28, 29, 30, 33, 53, 54, 85, 92, 102, 127, 134, 140, 145, 152], "temporari": [28, 29, 30, 33, 85, 127, 145], "produc": [28, 29, 30, 33, 41, 54, 85, 86, 92, 135, 136, 138, 140, 141, 152], "delet": 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94, 102, 131, 135, 138, 152], "region": [29, 30, 38, 43, 44, 45, 48, 50, 57, 58, 61, 70, 71, 72, 84, 85, 91, 102, 131, 136, 138, 140, 141, 143, 145], "1": [29, 30, 43, 44, 45, 49, 60, 61, 76, 91, 111, 112, 127, 128, 129, 132, 133, 135, 136, 137, 151, 152], "0": [29, 34, 38, 44, 48, 50, 51, 53, 54, 60, 61, 71, 72, 87, 91, 96, 104, 115, 127, 128, 129, 134, 135, 136, 137, 138, 151, 152], "culled_graph": 29, "dsmesh": [30, 49, 50, 51, 71, 72, 84, 126, 128, 129, 135, 136, 141, 152], "fcmask": [30, 48, 50, 51, 135, 138, 141], "core": [30, 135], "compute_mpas_region_mask": [30, 135, 138], "collect": [30, 48, 49, 50, 51, 85, 91, 127, 135, 138, 141, 152], "geometric_featur": [30, 48, 49, 50, 51, 85, 91, 92, 127, 135, 136, 138, 141, 142, 152], "featurecollect": [30, 43, 44, 45, 48, 49, 50, 51, 85, 91, 92, 127, 135, 136, 141, 142, 152], "creation": [30, 58, 59, 60, 61, 93, 131, 133], "multiprocess": [30, 48, 50, 51, 93, 131], "cellwidth": [32, 33, 34, 36, 53, 54, 79, 80, 81, 132, 133, 136], "y": 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57, 58, 59, 60, 80, 94, 135, 136, 137], "point": [32, 34, 43, 45, 49, 53, 58, 60, 61, 86, 91, 101, 103, 108, 111, 112, 117, 121, 122, 124, 127, 128, 129, 131, 135, 136, 137, 148, 149, 152], "bound": [32, 34, 47, 53, 59, 61, 75, 86, 135, 136, 137, 152], "polygon": [32, 34, 48, 50, 53, 91, 127, 135, 136, 152], "edg": [32, 34, 48, 50, 51, 53, 100, 106, 127, 128, 129, 130, 135, 136, 141, 149, 150, 152], "result": [32, 33, 34, 53, 54, 58, 59, 60, 61, 86, 88, 89, 90, 97, 98, 99, 100, 104, 127, 128, 129, 130, 135, 136, 137, 141, 145, 152], "lon": [33, 34, 36, 37, 43, 44, 45, 48, 50, 54, 56, 58, 59, 60, 61, 63, 64, 67, 81, 86, 91, 109, 110, 126, 127, 129, 132, 133, 136, 137], "lat": [33, 34, 36, 37, 38, 39, 40, 43, 44, 45, 48, 50, 54, 56, 58, 59, 60, 61, 63, 64, 67, 81, 86, 91, 109, 110, 126, 127, 129, 132, 133, 136, 137], "earth_radiu": [33, 34, 43, 45, 108, 109, 110, 132, 133, 136], "plot_cellwidth": [33, 54, 133], "jigsaw": [33, 34, 35, 36, 54, 131, 133], "size": [33, 34, 47, 54, 116, 121, 122, 124, 127, 135, 136, 142, 152], "latitud": [33, 38, 43, 44, 45, 47, 48, 50, 51, 54, 57, 58, 59, 60, 61, 71, 72, 91, 99, 100, 129, 132, 135, 136, 137, 138, 144, 149], "longitud": [33, 43, 44, 45, 47, 48, 50, 51, 54, 57, 58, 59, 60, 61, 81, 99, 100, 126, 129, 132, 135, 136, 137, 144, 149, 152], "store": [33, 54, 127, 135], "sever": [33, 54, 136, 137, 138, 144, 145, 152], "intermedi": [33, 54, 136, 141], "hfun": [33, 54, 136], "msh": [33, 53, 54, 133, 136, 140], "jig": [33, 54, 133, 136], "mesh_triangl": [33, 54, 133, 136], "degre": [33, 37, 38, 39, 40, 43, 45, 47, 48, 50, 54, 57, 58, 59, 60, 71, 72, 81, 91, 99, 109, 110, 126, 129, 135, 136, 137, 138, 152], "length": [33, 37, 38, 39, 40, 47, 54, 81, 111, 112, 135, 136, 149], "180": [33, 37, 48, 54, 57, 58, 59, 60, 81, 126, 132, 135, 136, 137, 152], "90": [33, 37, 38, 39, 40, 48, 54, 57, 58, 59, 60, 81, 132, 136, 137, 152], "plot": [33, 54, 58, 59, 60, 61, 91, 92, 102, 126, 127, 128, 129, 131, 137, 145, 149, 152], "cellwidthglob": [33, 54], "png": [33, 54, 58, 59, 60, 61, 92, 137], "convers": [33, 85, 127, 131, 136, 141, 152], "on_spher": [34, 35, 79, 133], "6371000": 34, "spheric": [34, 35, 79, 81, 135, 140, 149], "logic": 34, "msh_filenam": [35, 133], "output_nam": [35, 46, 133, 135], "sphere_radiu": [35, 133, 135], "convert": [35, 41, 46, 109, 110, 131, 133, 136, 149, 152], "triangl": [35, 41, 46, 86, 88, 89, 90, 126, 128, 129, 130, 131, 133], "sphere": [35, 96, 111, 112, 117, 121, 136, 149, 152], "otherwis": [35, 135], "ignor": [35, 59, 104, 127, 133, 137], "regular": [36, 127, 132, 136, 144, 152], "grid": [36, 37, 43, 44, 45, 47, 48, 58, 59, 60, 61, 64, 86, 90, 91, 94, 99, 131, 132, 135, 136, 137, 138], "cellwidthinatlant": 37, "cellwidthinpacif": 37, "distribut": [37, 40, 48, 50, 51, 136], "tanh": [37, 40, 136], "vector": [37, 38, 39, 40, 111, 112, 131], "atlant": [37, 137, 141], "pacif": [37, 137, 141], "cellwidthout": [37, 38, 39, 40], "globe": [37, 152], "cellwidtheq": [38, 39, 136], "30": [38, 48, 50, 135, 136, 137, 151, 152], "cellwidthmidlat": 38, "60": [38, 136, 137, 142, 145, 152], "cellwidthpol": [38, 39, 136], "35": [38, 136], "latposeq": 38, "15": [38, 136, 151], "latpospol": 38, "73": [38, 136, 137], "lattransit": [38, 40, 136], "40": [38, 135, 136, 137], "latwidtheq": 38, "6": [38, 39, 127, 128, 129, 134, 136, 137, 151, 152], "latwidthpol": 38, "9": [38, 136, 137, 151], "eddi": [38, 59, 132, 137, 152], "closur": [38, 59, 132, 137, 152], "intend": [38, 39, 40, 141, 145], "workflow": [38, 39, 40, 131, 137, 138, 141, 148, 152], "equat": [38, 39, 136, 137], "mid": [38, 136], "pole": [38, 39, 47, 135, 136, 137], "center": [38, 47, 49, 94, 99, 100, 114, 126, 128, 129, 130, 132, 135, 136, 137, 150, 152], "equatori": [38, 102, 136, 145], "transit": [38, 40, 58, 136, 137], "polar": [38, 72, 91, 102, 136, 138, 145], "1d": [38, 39, 43, 44, 45, 48, 57, 58, 59, 60, 73, 86, 131, 135, 136], "ec60to30": 38, "half": [38, 137], "resolut": [38, 51, 57, 58, 59, 111, 112, 128, 129, 135, 136, 137, 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[[136, "mesh-definition-tools"]], "Merging Cell Widths": [[136, "merging-cell-widths"]], "Defining an Eddy-closure Mesh": [[136, "defining-an-eddy-closure-mesh"]], "Defining a Rossby-radius Mesh": [[136, "defining-a-rossby-radius-mesh"]], "Defining an Atlantic/Pacific Mesh": [[136, "defining-an-atlantic-pacific-mesh"]], "Signed Distance Functions": [[136, "signed-distance-functions"]], "Coastal Tools": [[137, "coastal-tools"]], "Refining a Mesh": [[137, "refining-a-mesh"]], "Creating a Background Mesh": [[137, "creating-a-background-mesh"]], "Extracting Coastlines": [[137, "extracting-coastlines"]], "Computing Distance to Coast": [[137, "computing-distance-to-coast"]], "Blending Cell Widths": [[137, "blending-cell-widths"]], "Regions": [[137, "regions"]], "Coastline Alteration": [[138, "coastline-alteration"]], "Adding Land Blockages": [[138, "adding-land-blockages"]], "Masking Land-locked Cells": [[138, "masking-land-locked-cells"]], "Widening Transects": [[138, "widening-transects"]], "Adding a Depth Coordinate": [[139, "adding-a-depth-coordinate"]], "Adding a 1D depth coordinate": [[139, "adding-a-1d-depth-coordinate"]], "Adding a 3D zMid coordinate": [[139, "adding-a-3d-zmid-coordinate"]], "Writing a time-dependent, 3D zMid variable": [[139, "writing-a-time-dependent-3d-zmid-variable"]], "Ocean Mesh Creation": [[140, "ocean-mesh-creation"]], "Meridional Overturning Circulation": [[141, "meridional-overturning-circulation"]], "Building MOC Basins": [[141, "building-moc-basins"]], "Adding Southern Transects": [[141, "adding-southern-transects"]], "Building MOC Basins and Transects Together": [[141, "building-moc-basins-and-transects-together"]], "Plotting Ocean Transects": [[142, "plotting-ocean-transects"]], "Mask": [[143, "mask"]], "Extending a Mask": [[143, "extending-a-mask"]], "Mesh": [[144, "mesh"]], "MPAS-Seaice SCRIP files": [[144, "mpas-seaice-scrip-files"]], "SCRIP files for 2D grids": [[144, "scrip-files-for-2d-grids"]], "Graph partitioning": [[145, "graph-partitioning"]], "Running from compass": [[145, "running-from-compass"]], "Conda environment": [[145, "conda-environment"]], "Graph partition tools": [[145, "graph-partition-tools"]], "Graph partition function": [[145, "graph-partition-function"]], "Region masks": [[146, "region-masks"]], "Make a region mask for partitioning": [[146, "make-a-region-mask-for-partitioning"]], "Regrid": [[147, "regrid"]], "Regridding between MPAS-Seaice meshes": [[147, "regridding-between-mpas-seaice-meshes"]], "Testing Changes to mpas_tools": [[148, "testing-changes-to-mpas-tools"]], "Removing the test environment": [[148, "removing-the-test-environment"]], "Subdividing transects": [[149, "subdividing-transects"]], "Low-level functions": [[149, "low-level-functions"]], "Vector Operations": [[150, "vector-operations"]], "Vector Class": [[150, "vector-class"]], "Vector Reconstructions": [[150, "vector-reconstructions"]], "ParaView VTK Extractor": [[152, "paraview-vtk-extractor"]], "Extracting a Temperature Time-series": [[152, "extracting-a-temperature-time-series"]], "Extracting Multiple Fields": [[152, "extracting-multiple-fields"]], "Extracting \u201cAll\u201d Fields": [[152, "extracting-all-fields"]], "Indexing Dimensions": [[152, "indexing-dimensions"]], "Indexing Time": [[152, "indexing-time"]], "Ignoring Time": [[152, "ignoring-time"]], "Lon/Lat Coordinates": [[152, "lon-lat-coordinates"]], "Topographic Data": [[152, "topographic-data"]], "Extracting a Region": [[152, "extracting-a-region"]], "ParaView Macros": [[152, "paraview-macros"]], "MPAS Mesh to Triangles": [[152, "mpas-mesh-to-triangles"]], "Colormaps": [[152, "colormaps"]]}, "indexentries": {"module": [[5, "module-mpas_tools.cime.constants"], [31, "module-mpas_tools.mesh.creation.build_mesh"], [36, "module-mpas_tools.mesh.creation.mesh_definition_tools"], [42, "module-mpas_tools.mesh.creation.signed_distance"], [52, "module-mpas_tools.ocean.build_mesh"], [55, 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mpas_tools.mesh.conversion)": [[29, "mpas_tools.mesh.conversion.cull"]], "mask() (in module mpas_tools.mesh.conversion)": [[30, "mpas_tools.mesh.conversion.mask"]], "mpas_tools.mesh.creation.build_mesh": [[31, "module-mpas_tools.mesh.creation.build_mesh"]], "build_planar_mesh() (in module mpas_tools.mesh.creation.build_mesh)": [[32, "mpas_tools.mesh.creation.build_mesh.build_planar_mesh"]], "build_spherical_mesh() (in module mpas_tools.mesh.creation.build_mesh)": [[33, "mpas_tools.mesh.creation.build_mesh.build_spherical_mesh"]], "jigsaw_driver() (in module mpas_tools.mesh.creation.jigsaw_driver)": [[34, "mpas_tools.mesh.creation.jigsaw_driver.jigsaw_driver"]], "jigsaw_to_netcdf() (in module mpas_tools.mesh.creation.jigsaw_to_netcdf)": [[35, "mpas_tools.mesh.creation.jigsaw_to_netcdf.jigsaw_to_netcdf"]], "mpas_tools.mesh.creation.mesh_definition_tools": [[36, "module-mpas_tools.mesh.creation.mesh_definition_tools"]], "atlanticpacificgrid() (in module mpas_tools.mesh.creation.mesh_definition_tools)": [[37, "mpas_tools.mesh.creation.mesh_definition_tools.AtlanticPacificGrid"]], "ec_cellwidthvslat() (in module mpas_tools.mesh.creation.mesh_definition_tools)": [[38, "mpas_tools.mesh.creation.mesh_definition_tools.EC_CellWidthVsLat"]], "rrs_cellwidthvslat() (in module mpas_tools.mesh.creation.mesh_definition_tools)": [[39, "mpas_tools.mesh.creation.mesh_definition_tools.RRS_CellWidthVsLat"]], "mergecellwidthvslat() (in module mpas_tools.mesh.creation.mesh_definition_tools)": [[40, "mpas_tools.mesh.creation.mesh_definition_tools.mergeCellWidthVsLat"]], "mpas_to_triangle() (in module mpas_tools.mesh.creation.mpas_to_triangle)": [[41, "mpas_tools.mesh.creation.mpas_to_triangle.mpas_to_triangle"]], "mpas_tools.mesh.creation.signed_distance": [[42, "module-mpas_tools.mesh.creation.signed_distance"]], "distance_from_geojson() (in module mpas_tools.mesh.creation.signed_distance)": [[43, "mpas_tools.mesh.creation.signed_distance.distance_from_geojson"]], "mask_from_geojson() (in module mpas_tools.mesh.creation.signed_distance)": [[44, "mpas_tools.mesh.creation.signed_distance.mask_from_geojson"]], "signed_distance_from_geojson() (in module mpas_tools.mesh.creation.signed_distance)": [[45, "mpas_tools.mesh.creation.signed_distance.signed_distance_from_geojson"]], "triangle_to_netcdf() (in module mpas_tools.mesh.creation.triangle_to_netcdf)": [[46, "mpas_tools.mesh.creation.triangle_to_netcdf.triangle_to_netcdf"]], "interp_bilin() (in module mpas_tools.mesh.interpolation)": [[47, "mpas_tools.mesh.interpolation.interp_bilin"]], "compute_lon_lat_region_masks() (in module mpas_tools.mesh.mask)": [[48, "mpas_tools.mesh.mask.compute_lon_lat_region_masks"]], "compute_mpas_flood_fill_mask() (in module mpas_tools.mesh.mask)": [[49, "mpas_tools.mesh.mask.compute_mpas_flood_fill_mask"]], "compute_mpas_region_masks() (in module mpas_tools.mesh.mask)": [[50, "mpas_tools.mesh.mask.compute_mpas_region_masks"]], "compute_mpas_transect_masks() (in module mpas_tools.mesh.mask)": [[51, "mpas_tools.mesh.mask.compute_mpas_transect_masks"]], "mpas_tools.ocean.build_mesh": [[52, "module-mpas_tools.ocean.build_mesh"]], "build_planar_mesh() (in module mpas_tools.ocean.build_mesh)": [[53, "mpas_tools.ocean.build_mesh.build_planar_mesh"]], "build_spherical_mesh() (in module mpas_tools.ocean.build_mesh)": [[54, "mpas_tools.ocean.build_mesh.build_spherical_mesh"]], "mpas_tools.ocean.coastal_tools": [[55, "module-mpas_tools.ocean.coastal_tools"]], "cpp_projection() (in module mpas_tools.ocean.coastal_tools)": [[56, "mpas_tools.ocean.coastal_tools.CPP_projection"]], "coastal_refined_mesh() (in module mpas_tools.ocean.coastal_tools)": [[57, "mpas_tools.ocean.coastal_tools.coastal_refined_mesh"]], "compute_cell_width() (in module mpas_tools.ocean.coastal_tools)": [[58, "mpas_tools.ocean.coastal_tools.compute_cell_width"]], "create_background_mesh() (in module mpas_tools.ocean.coastal_tools)": [[59, "mpas_tools.ocean.coastal_tools.create_background_mesh"]], "distance_to_coast() (in module mpas_tools.ocean.coastal_tools)": [[60, "mpas_tools.ocean.coastal_tools.distance_to_coast"]], "extract_coastlines() (in module mpas_tools.ocean.coastal_tools)": [[61, "mpas_tools.ocean.coastal_tools.extract_coastlines"]], "get_convex_hull_coordinates() (in module mpas_tools.ocean.coastal_tools)": [[62, "mpas_tools.ocean.coastal_tools.get_convex_hull_coordinates"]], "get_data_inside_box() (in module mpas_tools.ocean.coastal_tools)": [[63, "mpas_tools.ocean.coastal_tools.get_data_inside_box"]], "get_indices_inside_quad() (in module mpas_tools.ocean.coastal_tools)": [[64, "mpas_tools.ocean.coastal_tools.get_indices_inside_quad"]], "plot_coarse_coast() (in module mpas_tools.ocean.coastal_tools)": [[65, "mpas_tools.ocean.coastal_tools.plot_coarse_coast"]], "plot_region_box() (in module mpas_tools.ocean.coastal_tools)": [[66, "mpas_tools.ocean.coastal_tools.plot_region_box"]], "save_matfile() (in module mpas_tools.ocean.coastal_tools)": [[67, "mpas_tools.ocean.coastal_tools.save_matfile"]], "smooth_coastline() (in module mpas_tools.ocean.coastal_tools)": [[68, "mpas_tools.ocean.coastal_tools.smooth_coastline"]], "mpas_tools.ocean.coastline_alteration": [[69, "module-mpas_tools.ocean.coastline_alteration"]], "add_critical_land_blockages() (in module mpas_tools.ocean.coastline_alteration)": [[70, "mpas_tools.ocean.coastline_alteration.add_critical_land_blockages"]], "add_land_locked_cells_to_mask() (in module mpas_tools.ocean.coastline_alteration)": [[71, "mpas_tools.ocean.coastline_alteration.add_land_locked_cells_to_mask"]], "widen_transect_edge_masks() (in module mpas_tools.ocean.coastline_alteration)": [[72, "mpas_tools.ocean.coastline_alteration.widen_transect_edge_masks"]], "add_depth() (in module mpas_tools.ocean.depth)": [[73, "mpas_tools.ocean.depth.add_depth"]], "add_zmid() (in module mpas_tools.ocean.depth)": [[74, "mpas_tools.ocean.depth.add_zmid"]], "compute_depth() (in module mpas_tools.ocean.depth)": [[75, "mpas_tools.ocean.depth.compute_depth"]], "compute_zmid() (in module mpas_tools.ocean.depth)": [[76, "mpas_tools.ocean.depth.compute_zmid"]], "write_time_varying_zmid() (in module mpas_tools.ocean.depth)": [[77, "mpas_tools.ocean.depth.write_time_varying_zmid"]], "inject_bathymetry() (in module mpas_tools.ocean.inject_bathymetry)": [[78, "mpas_tools.ocean.inject_bathymetry.inject_bathymetry"]], "inject_meshdensity_from_file() (in module mpas_tools.ocean.inject_meshdensity)": [[79, "mpas_tools.ocean.inject_meshDensity.inject_meshDensity_from_file"]], "inject_planar_meshdensity() (in module mpas_tools.ocean.inject_meshdensity)": [[80, "mpas_tools.ocean.inject_meshDensity.inject_planar_meshDensity"]], "inject_spherical_meshdensity() (in module mpas_tools.ocean.inject_meshdensity)": [[81, "mpas_tools.ocean.inject_meshDensity.inject_spherical_meshDensity"]], "inject_preserve_floodplain() (in module mpas_tools.ocean.inject_preserve_floodplain)": [[82, "mpas_tools.ocean.inject_preserve_floodplain.inject_preserve_floodplain"]], "mpas_tools.ocean.moc": [[83, "module-mpas_tools.ocean.moc"]], "add_moc_southern_boundary_transects() (in module mpas_tools.ocean.moc)": [[84, "mpas_tools.ocean.moc.add_moc_southern_boundary_transects"]], "make_moc_basins_and_transects() (in module mpas_tools.ocean.moc)": [[85, "mpas_tools.ocean.moc.make_moc_basins_and_transects"]], "find_transect_levels_and_weights() (in module mpas_tools.ocean.transects)": [[86, "mpas_tools.ocean.transects.find_transect_levels_and_weights"]], "get_outline_segments() (in module mpas_tools.ocean.transects)": [[87, "mpas_tools.ocean.transects.get_outline_segments"]], "interp_mpas_to_transect_triangle_nodes() (in module mpas_tools.ocean.transects)": [[88, "mpas_tools.ocean.transects.interp_mpas_to_transect_triangle_nodes"]], "interp_mpas_to_transect_triangles() (in module mpas_tools.ocean.transects)": [[89, "mpas_tools.ocean.transects.interp_mpas_to_transect_triangles"]], "interp_transect_grid_to_transect_triangle_nodes() (in module mpas_tools.ocean.transects)": [[90, "mpas_tools.ocean.transects.interp_transect_grid_to_transect_triangle_nodes"]], "add_inset() (in module mpas_tools.ocean.viz)": [[91, "mpas_tools.ocean.viz.add_inset"]], "plot_ocean_transects() (in module mpas_tools.ocean.viz)": [[92, "mpas_tools.ocean.viz.plot_ocean_transects"]], "create_pool() (in module mpas_tools.parallel)": [[93, "mpas_tools.parallel.create_pool"]], "make_planar_hex_mesh() (in module mpas_tools.planar_hex)": [[94, "mpas_tools.planar_hex.make_planar_hex_mesh"]], "scrip_from_mpas() (in module mpas_tools.scrip.from_mpas)": [[95, "mpas_tools.scrip.from_mpas.scrip_from_mpas"]], "extend_seaice_mask() (in module mpas_tools.seaice.mask)": [[96, "mpas_tools.seaice.mask.extend_seaice_mask"]], "make_mpas_scripfile_on_cells() (in module mpas_tools.seaice.mesh)": [[97, "mpas_tools.seaice.mesh.make_mpas_scripfile_on_cells"]], "make_mpas_scripfile_on_vertices() (in module mpas_tools.seaice.mesh)": [[98, "mpas_tools.seaice.mesh.make_mpas_scripfile_on_vertices"]], "write_2d_scripfile() (in module mpas_tools.seaice.mesh)": [[99, "mpas_tools.seaice.mesh.write_2D_scripfile"]], "write_scrip_file() (in module mpas_tools.seaice.mesh)": [[100, "mpas_tools.seaice.mesh.write_scrip_file"]], "create_partitions() (in module mpas_tools.seaice.partition)": [[101, "mpas_tools.seaice.partition.create_partitions"]], "gen_seaice_mesh_partition() (in module mpas_tools.seaice.partition)": [[102, "mpas_tools.seaice.partition.gen_seaice_mesh_partition"]], "prepare_partitions() (in module mpas_tools.seaice.partition)": [[103, "mpas_tools.seaice.partition.prepare_partitions"]], "make_regions_file() (in module mpas_tools.seaice.regions)": [[104, "mpas_tools.seaice.regions.make_regions_file"]], "regrid_to_other_mesh() (in module mpas_tools.seaice.regrid)": [[105, "mpas_tools.seaice.regrid.regrid_to_other_mesh"]], "split_grids() (in module mpas_tools.split_grids)": [[106, "mpas_tools.split_grids.split_grids"]], "test_cime_constants() (in module mpas_tools.tests.test_cime_constants)": [[107, "mpas_tools.tests.test_cime_constants.test_cime_constants"]], "cartesian_to_great_circle_distance() (in module mpas_tools.transects)": [[108, "mpas_tools.transects.cartesian_to_great_circle_distance"]], "cartesian_to_lon_lat() (in module mpas_tools.transects)": [[109, "mpas_tools.transects.cartesian_to_lon_lat"]], "lon_lat_to_cartesian() (in module mpas_tools.transects)": [[110, "mpas_tools.transects.lon_lat_to_cartesian"]], "subdivide_great_circle() (in module mpas_tools.transects)": [[111, "mpas_tools.transects.subdivide_great_circle"]], "subdivide_planar() (in module mpas_tools.transects)": [[112, "mpas_tools.transects.subdivide_planar"]], "center() (in module mpas_tools.translate)": [[113, "mpas_tools.translate.center"]], "center_on_mesh() (in module mpas_tools.translate)": [[114, "mpas_tools.translate.center_on_mesh"]], "translate() (in module mpas_tools.translate)": [[115, "mpas_tools.translate.translate"]], "vector (class in mpas_tools.vector)": [[116, "mpas_tools.vector.Vector"]], "__init__() (mpas_tools.vector.vector method)": [[116, "mpas_tools.vector.Vector.__init__"]], "angular_distance() (mpas_tools.vector.vector method)": [[117, "mpas_tools.vector.Vector.angular_distance"]], "cross() (mpas_tools.vector.vector method)": [[118, "mpas_tools.vector.Vector.cross"]], "det() (mpas_tools.vector.vector static method)": [[119, "mpas_tools.vector.Vector.det"]], "dot() (mpas_tools.vector.vector method)": [[120, "mpas_tools.vector.Vector.dot"]], "intersection() (mpas_tools.vector.vector static method)": [[121, "mpas_tools.vector.Vector.intersection"]], "intersects() (mpas_tools.vector.vector static method)": [[122, "mpas_tools.vector.Vector.intersects"]], "mag() (mpas_tools.vector.vector method)": [[123, "mpas_tools.vector.Vector.mag"]], "straddles() (mpas_tools.vector.vector static method)": [[124, "mpas_tools.vector.Vector.straddles"]], "register_sci_viz_colormaps() (in module mpas_tools.viz.colormaps)": [[125, "mpas_tools.viz.colormaps.register_sci_viz_colormaps"]], "mesh_to_triangles() (in module mpas_tools.viz.mesh_to_triangles)": [[126, "mpas_tools.viz.mesh_to_triangles.mesh_to_triangles"]], "extract_vtk() (in module mpas_tools.viz.paraview_extractor)": [[127, "mpas_tools.viz.paraview_extractor.extract_vtk"]], "find_planar_transect_cells_and_weights() (in module mpas_tools.viz.transects)": [[128, "mpas_tools.viz.transects.find_planar_transect_cells_and_weights"]], "find_transect_cells_and_weights() (in module mpas_tools.viz.transects)": [[129, "mpas_tools.viz.transects.find_transect_cells_and_weights"]], "make_triangle_tree() (in module mpas_tools.viz.transects)": [[130, "mpas_tools.viz.transects.make_triangle_tree"]]}})
\ No newline at end of file
diff --git a/stable/versions.html b/stable/versions.html
index 7b721c95..dd92d4f3 100644
--- a/stable/versions.html
+++ b/stable/versions.html
@@ -234,6 +234,9 @@
 <tr class="row-even"><td><p><a class="reference external" href="../0.30.0/index.html">v0.30.0</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MPAS-Dev/MPAS-Tools/tree/0.30.0">0.30.0</a></p></td>
 </tr>
+<tr class="row-odd"><td><p><a class="reference external" href="../0.31.0/index.html">v0.31.0</a></p></td>
+<td><p><a class="reference external" href="https://github.com/MPAS-Dev/MPAS-Tools/tree/0.31.0">0.31.0</a></p></td>
+</tr>
 </tbody>
 </table>
 </section>