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I have tried Python 3.11.11 and installed all the required packages, but it seems that nnUNetv2 has a compatibility issue with NumPy 1.24.2.
Package Version Editable project location
absl-py 2.1.0 acvl_utils 0.2.2 aiohappyeyeballs 2.4.4 aiohttp 3.11.11 aiosignal 1.3.2 antlr4-python3-runtime 4.9.3 anyio 4.8.0 asttokens 3.0.0 attrs 24.3.0 batchgenerators 0.25.1 black 24.10.0 blosc2 3.0.0b4 certifi 2024.12.14 cfgv 3.4.0 charset-normalizer 3.4.1 click 8.1.8 cmake 3.31.2 comm 0.2.2 connected-components-3d 3.22.0 contourpy 1.3.1 coverage 7.6.10 cycler 0.12.1 debugpy 1.8.11 decorator 5.1.1 Deprecated 1.2.15 dicom2nifti 2.5.1 distlib 0.3.9 docopt 0.6.2 dynamic_network_architectures 0.3.1 executing 2.1.0 filelock 3.16.1 flake8 7.1.1 flake8-bugbear 24.12.12 fonttools 4.55.3 frozenlist 1.5.0 fsspec 2024.12.0 future 1.0.0 gevent 24.11.1 graphviz 0.20.3 greenlet 3.1.1 grpcio 1.69.0 h11 0.14.0 httpcore 1.0.7 httpx 0.28.1 huggingface-hub 0.27.0 humanize 4.11.0 hydra-core 1.3.2 identify 2.6.5 idna 3.10 imagecodecs 2024.12.30 imageio 2.36.1 importlib_resources 6.5.2 iniconfig 2.0.0 ipykernel 6.29.5 ipython 8.31.0 jedi 0.19.2 Jinja2 3.1.5 joblib 1.4.2 jupyter_client 8.6.3 jupyter_core 5.7.2 kiwisolver 1.4.8 lazy_loader 0.4 lightning-utilities 0.11.9 linecache2 1.0.0 lit 18.1.8 loguru 0.7.3 Markdown 3.7 markdown-it-py 3.0.0 MarkupSafe 3.0.2 matplotlib 3.10.0 matplotlib-inline 0.1.7 mccabe 0.7.0 mdurl 0.1.2 monai 1.3.0 mpmath 1.3.0 msgpack 1.1.0 multidict 6.1.0 mypy-extensions 1.0.0 natsort 8.4.0 ndindex 1.9.2 nest-asyncio 1.6.0 networkx 3.4.2 nibabel 5.3.2 nnunetv2 2.2.1 nodeenv 1.9.1 numexpr 2.10.2 numpy 1.24.2 nvidia-cublas-cu11 11.10.3.66 nvidia-cuda-cupti-cu11 11.7.101 nvidia-cuda-nvrtc-cu11 11.7.99 nvidia-cuda-runtime-cu11 11.7.99 nvidia-cudnn-cu11 8.5.0.96 nvidia-cufft-cu11 10.9.0.58 nvidia-curand-cu11 10.2.10.91 nvidia-cusolver-cu11 11.4.0.1 nvidia-cusparse-cu11 11.7.4.91 nvidia-nccl-cu11 2.14.3 nvidia-nvtx-cu11 11.7.91 omegaconf 2.3.0 packaging 24.2 pandas 2.2.3 parallel-ssh 2.12.0 parso 0.8.4 pathspec 0.12.1 pexpect 4.9.0 pillow 11.1.0 pip 24.3.1 platformdirs 4.3.6 pluggy 1.5.0 pre_commit 4.0.1 prompt_toolkit 3.0.48 propcache 0.2.1 protobuf 5.29.2 psutil 6.1.1 ptyprocess 0.7.0 pure_eval 0.2.3 py-cpuinfo 9.0.0 pycodestyle 2.12.1 pydicom 3.0.1 pyflakes 3.2.0 Pygments 2.19.0 pykwalify 1.8.0 pyparsing 3.2.1 pyradiomics 3.0.1 pytest 8.3.4 pytest-cov 6.0.0 python-dateutil 2.9.0.post0 python-dotenv 1.0.1 python-gdcm 3.0.24.1 pytorch-lightning 2.0.1.post0 pytz 2024.2 PyWavelets 1.8.0 PyYAML 6.0.2 pyzmq 26.2.0 requests 2.32.3 rich 13.9.4 ruamel.yaml 0.18.9 ruamel.yaml.clib 0.2.12 scikit-image 0.25.0 scikit-learn 1.2.2 scipy 1.15.0 seaborn 0.13.2 segmentation_failures 2024.0.1 setuptools 65.5.0 shellingham 1.5.4 SimpleITK 2.2.1 six 1.17.0 sniffio 1.3.1 ssh-python 1.0.0 ssh2-python 1.0.0 stack-data 0.6.3 sympy 1.13.3 tensorboard 2.18.0 tensorboard-data-server 0.7.2 threadpoolctl 3.5.0 tifffile 2024.12.12 timm 0.6.13 torch 2.0.1 torchaudio 2.0.2 torchio 0.18.91 torchmetrics 1.6.1 torchvision 0.15.2 tornado 6.4.2 tqdm 4.67.1 traceback2 1.4.0 traitlets 5.14.3 triton 2.0.0 typer 0.15.1 typing_extensions 4.12.2 tzdata 2024.2 unittest2 1.1.0 urllib3 2.3.0 virtualenv 20.28.1 wcwidth 0.2.13 Werkzeug 3.1.3 wheel 0.45.1 wrapt 1.17.0 yacs 0.1.8 yarl 1.18.3 zope.event 5.0 zope.interface 7.2
The text was updated successfully, but these errors were encountered:
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I have tried Python 3.11.11 and installed all the required packages, but it seems that nnUNetv2 has a compatibility issue with NumPy 1.24.2.
Package Version Editable project location
absl-py 2.1.0
acvl_utils 0.2.2
aiohappyeyeballs 2.4.4
aiohttp 3.11.11
aiosignal 1.3.2
antlr4-python3-runtime 4.9.3
anyio 4.8.0
asttokens 3.0.0
attrs 24.3.0
batchgenerators 0.25.1
black 24.10.0
blosc2 3.0.0b4
certifi 2024.12.14
cfgv 3.4.0
charset-normalizer 3.4.1
click 8.1.8
cmake 3.31.2
comm 0.2.2
connected-components-3d 3.22.0
contourpy 1.3.1
coverage 7.6.10
cycler 0.12.1
debugpy 1.8.11
decorator 5.1.1
Deprecated 1.2.15
dicom2nifti 2.5.1
distlib 0.3.9
docopt 0.6.2
dynamic_network_architectures 0.3.1
executing 2.1.0
filelock 3.16.1
flake8 7.1.1
flake8-bugbear 24.12.12
fonttools 4.55.3
frozenlist 1.5.0
fsspec 2024.12.0
future 1.0.0
gevent 24.11.1
graphviz 0.20.3
greenlet 3.1.1
grpcio 1.69.0
h11 0.14.0
httpcore 1.0.7
httpx 0.28.1
huggingface-hub 0.27.0
humanize 4.11.0
hydra-core 1.3.2
identify 2.6.5
idna 3.10
imagecodecs 2024.12.30
imageio 2.36.1
importlib_resources 6.5.2
iniconfig 2.0.0
ipykernel 6.29.5
ipython 8.31.0
jedi 0.19.2
Jinja2 3.1.5
joblib 1.4.2
jupyter_client 8.6.3
jupyter_core 5.7.2
kiwisolver 1.4.8
lazy_loader 0.4
lightning-utilities 0.11.9
linecache2 1.0.0
lit 18.1.8
loguru 0.7.3
Markdown 3.7
markdown-it-py 3.0.0
MarkupSafe 3.0.2
matplotlib 3.10.0
matplotlib-inline 0.1.7
mccabe 0.7.0
mdurl 0.1.2
monai 1.3.0
mpmath 1.3.0
msgpack 1.1.0
multidict 6.1.0
mypy-extensions 1.0.0
natsort 8.4.0
ndindex 1.9.2
nest-asyncio 1.6.0
networkx 3.4.2
nibabel 5.3.2
nnunetv2 2.2.1
nodeenv 1.9.1
numexpr 2.10.2
numpy 1.24.2
nvidia-cublas-cu11 11.10.3.66
nvidia-cuda-cupti-cu11 11.7.101
nvidia-cuda-nvrtc-cu11 11.7.99
nvidia-cuda-runtime-cu11 11.7.99
nvidia-cudnn-cu11 8.5.0.96
nvidia-cufft-cu11 10.9.0.58
nvidia-curand-cu11 10.2.10.91
nvidia-cusolver-cu11 11.4.0.1
nvidia-cusparse-cu11 11.7.4.91
nvidia-nccl-cu11 2.14.3
nvidia-nvtx-cu11 11.7.91
omegaconf 2.3.0
packaging 24.2
pandas 2.2.3
parallel-ssh 2.12.0
parso 0.8.4
pathspec 0.12.1
pexpect 4.9.0
pillow 11.1.0
pip 24.3.1
platformdirs 4.3.6
pluggy 1.5.0
pre_commit 4.0.1
prompt_toolkit 3.0.48
propcache 0.2.1
protobuf 5.29.2
psutil 6.1.1
ptyprocess 0.7.0
pure_eval 0.2.3
py-cpuinfo 9.0.0
pycodestyle 2.12.1
pydicom 3.0.1
pyflakes 3.2.0
Pygments 2.19.0
pykwalify 1.8.0
pyparsing 3.2.1
pyradiomics 3.0.1
pytest 8.3.4
pytest-cov 6.0.0
python-dateutil 2.9.0.post0
python-dotenv 1.0.1
python-gdcm 3.0.24.1
pytorch-lightning 2.0.1.post0
pytz 2024.2
PyWavelets 1.8.0
PyYAML 6.0.2
pyzmq 26.2.0
requests 2.32.3
rich 13.9.4
ruamel.yaml 0.18.9
ruamel.yaml.clib 0.2.12
scikit-image 0.25.0
scikit-learn 1.2.2
scipy 1.15.0
seaborn 0.13.2
segmentation_failures 2024.0.1
setuptools 65.5.0
shellingham 1.5.4
SimpleITK 2.2.1
six 1.17.0
sniffio 1.3.1
ssh-python 1.0.0
ssh2-python 1.0.0
stack-data 0.6.3
sympy 1.13.3
tensorboard 2.18.0
tensorboard-data-server 0.7.2
threadpoolctl 3.5.0
tifffile 2024.12.12
timm 0.6.13
torch 2.0.1
torchaudio 2.0.2
torchio 0.18.91
torchmetrics 1.6.1
torchvision 0.15.2
tornado 6.4.2
tqdm 4.67.1
traceback2 1.4.0
traitlets 5.14.3
triton 2.0.0
typer 0.15.1
typing_extensions 4.12.2
tzdata 2024.2
unittest2 1.1.0
urllib3 2.3.0
virtualenv 20.28.1
wcwidth 0.2.13
Werkzeug 3.1.3
wheel 0.45.1
wrapt 1.17.0
yacs 0.1.8
yarl 1.18.3
zope.event 5.0
zope.interface 7.2
The text was updated successfully, but these errors were encountered: