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 </head>
 
@@ -94,6 +92,7 @@
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 </ul>
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+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
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+  <section id="mdonatello">
+<span id="id1"></span><h1>MDonatello<a class="headerlink" href="#mdonatello" title="Link to this heading"></a></h1>
+<div class="line-block">
+<div class="line">🖋️ <strong>Authors</strong>: <a class="reference external" href="https://github.com/talagayev/MDonatello/blob/main/AUTHORS.md">MDonatello authors</a></div>
+<div class="line">🏠 <strong>Project home:</strong> <a class="reference external" href="https://github.com/talagayev/MDonatello">https://github.com/talagayev/MDonatello</a></div>
+<div class="line">📖 <strong>Documentation:</strong> <a class="reference external" href="https://mdonatello.readthedocs.io/">https://mdonatello.readthedocs.io/</a></div>
+<div class="line">⚖️ <strong>License:</strong> GPL-2.0-or-later</div>
+<div class="line">🔑 <strong>Keywords:</strong> 2D, visualization, jupyter notebook, ipywidgets, rdkit, display</div>
+<div class="line">🚀 <strong>Development status:</strong> Development Status :: 3 - Alpha</div>
+<div class="line">📜 <strong>Changelog:</strong> <a class="reference external" href="https://github.com/talagayev/MDonatello/blob/main/CHANGELOG.md">https://github.com/talagayev/MDonatello/blob/main/CHANGELOG.md</a></div>
+<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="MDonatello develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a></div>
+<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="MDonatello develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></div>
+<div class="line"><strong>Description:</strong></div>
+<div class="line"><em>2D small molecule visualization for MDAnalysis with jupyter notebook</em></div>
+</div>
+<section id="installation-instructions">
+<h2>Installation instructions<a class="headerlink" href="#installation-instructions" title="Link to this heading"></a></h2>
+<p>The latest version of MDonatello can be installed using the following:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>mamba<span class="w"> </span>install<span class="w"> </span>-c<span class="w"> </span>conda-forge<span class="w"> </span>mdonatello
+</pre></div>
+</div>
+<p>The source code of MDonatello can be installed using the following:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip<span class="w"> </span>install<span class="w"> </span>git+https://github.com/talagayev/MDonatello
+</pre></div>
+</div>
+</section>
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+    to learn how <a href="https://www.mdanalysis.org">MDAnalysis</a> collects data.</p>
+    <script data-goatcounter="https://mdanalysis.goatcounter.com/count"
+        async src="//gc.zgo.at/count.js"></script>
+</div>
+
+
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  <script>
+    var versions_json_url = ''
+</script>
+
+<div class="rst-versions" data-toggle="rst-versions" role="note"
+     aria-label="versions">
+    <span class="rst-current-version" data-toggle="rst-current-version">
+      <span class="fa fa-book"></span>
+        
+      <span class="fa fa-caret-down"></span>
+    </span>
+
+    <div class="rst-other-versions">
+        <dl id="versionselector">
+            <dt>Other Versions</dt>
+        </dl>
+
+    </div>
+</div><script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/OpenMMDL.html b/OpenMMDL.html
index 554b5d1a..5ba8ce66 100644
--- a/OpenMMDL.html
+++ b/OpenMMDL.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/PathSimAnalysis.html b/PathSimAnalysis.html
index 3203eb4c..15039181 100644
--- a/PathSimAnalysis.html
+++ b/PathSimAnalysis.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/ProLIF.html b/ProLIF.html
index 5a186a09..16cf59f5 100644
--- a/ProLIF.html
+++ b/ProLIF.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/_sources/MDonatello.rst.txt b/_sources/MDonatello.rst.txt
new file mode 100644
index 00000000..dfbc6dc0
--- /dev/null
+++ b/_sources/MDonatello.rst.txt
@@ -0,0 +1,46 @@
+.. _MDonatello:
+
+************************************************
+MDonatello
+************************************************
+
+| 🖋️ **Authors**: `MDonatello authors`_
+| 🏠 **Project home:** https://github.com/talagayev/MDonatello
+| 📖 **Documentation:** https://mdonatello.readthedocs.io/
+| ⚖️ **License:** GPL-2.0-or-later
+| 🔑 **Keywords:** 2D, visualization, jupyter notebook, ipywidgets, rdkit, display
+| 🚀 **Development status:** Development Status :: 3 - Alpha
+| 📜 **Changelog:** https://github.com/talagayev/MDonatello/blob/main/CHANGELOG.md
+| 🧪 **Tests (latest):** |MDonatello_latest| 
+| 🧪 **Tests (develop):** |MDonatello_develop| 
+| **Description:**
+| *2D small molecule visualization for MDAnalysis with jupyter notebook*
+
+
+
+Installation instructions
+=========================
+
+The latest version of MDonatello can be installed using the following:
+
+.. code-block:: bash
+
+    mamba install -c conda-forge mdonatello
+
+The source code of MDonatello can be installed using the following:
+
+.. code-block:: bash
+
+    pip install git+https://github.com/talagayev/MDonatello
+
+.. _`MDonatello authors`:
+   https://github.com/talagayev/MDonatello/blob/main/AUTHORS.md
+
+.. |MDonatello_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
+   :alt: MDonatello develop CI status
+   :target: https://github.com/MDAnalysis/MDAKits/actions
+
+.. |MDonatello_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
+   :alt: MDonatello develop CI status
+   :target: https://github.com/MDAnalysis/MDAKits/actions
+
diff --git a/_sources/mdakits.rst.txt b/_sources/mdakits.rst.txt
index 9038323f..48992f36 100644
--- a/_sources/mdakits.rst.txt
+++ b/_sources/mdakits.rst.txt
@@ -33,6 +33,10 @@ Each of the MDAKits in the following table links to a page with more details abo
       - clustering, machine-learning, algorithms, molecular-dynamics, protein-refinement
       - `MDANCE authors`_
       - |MDANCE_latest| |MDANCE_develop|
+    * - :ref:`MDonatello`
+      - 2D, visualization, jupyter notebook, ipywidgets, rdkit, display
+      - `MDonatello authors`_
+      - |MDonatello_latest| |MDonatello_develop|
     * - :ref:`mdaencore`
       - ensemble, similarity, covariance, PCA
       - `mdaencore authors`_
@@ -119,6 +123,7 @@ Each of the MDAKits in the following table links to a page with more details abo
    waterdynamics
    transport-analysis
    MDANCE
+   MDonatello
    mdaencore
    membrane-curvature
    maicos
@@ -184,6 +189,17 @@ Each of the MDAKits in the following table links to a page with more details abo
    :alt: MDANCE develop CI status
    :target: https://github.com/MDAnalysis/MDAKits/actions
 
+.. _`MDonatello authors`:
+   https://github.com/talagayev/MDonatello/blob/main/AUTHORS.md
+
+.. |MDonatello_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
+   :alt: MDonatello develop CI status
+   :target: https://github.com/MDAnalysis/MDAKits/actions
+
+.. |MDonatello_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
+   :alt: MDonatello develop CI status
+   :target: https://github.com/MDAnalysis/MDAKits/actions
+
 .. _`mdaencore authors`:
    https://github.com/MDAnalysis/mdaencore/blob/main/AUTHORS.md
 
diff --git a/_static/css/badge_only.css b/_static/css/badge_only.css
index c718cee4..88ba55b9 100644
--- a/_static/css/badge_only.css
+++ b/_static/css/badge_only.css
@@ -1 +1 @@
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\ No newline at end of file
diff --git a/_static/css/theme.css b/_static/css/theme.css
index 19a446a0..6843d97b 100644
--- a/_static/css/theme.css
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diff --git a/about.html b/about.html
index a0bd3e0a..5c8c40c2 100644
--- a/about.html
+++ b/about.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
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-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
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-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="#" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -167,16 +165,19 @@ <h2>Why?<a class="headerlink" href="#why" title="Link to this heading"></a></
 accessibility, interoperability, and reusability) is essential to robust, reproducible,
 and transparent science. However, scientists typically are not supported in making the
 subtantial effort require to make software FAIR-compliant.</p>
-<a class="reference internal image-reference" href="_images/MDAcats_FAIR.png"><img alt="Scientific code often falls short of FAIR tenets" src="_images/MDAcats_FAIR.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/MDAcats_FAIR.png"><img alt="Scientific code often falls short of FAIR tenets" src="_images/MDAcats_FAIR.png" style="width: 600px;" />
+</a>
 <p>One potential option, and one that MDAnalysis has historically attempted, is to attempt
 to add as many methods as possible in a single centralised library. However, this is
 a non-ideal solution.</p>
-<a class="reference internal image-reference" href="_images/MDAcats_MDAnalysis.png"><img alt="Centralising code to MDAnalysis is a limited solution" src="_images/MDAcats_MDAnalysis.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/MDAcats_MDAnalysis.png"><img alt="Centralising code to MDAnalysis is a limited solution" src="_images/MDAcats_MDAnalysis.png" style="width: 600px;" />
+</a>
 <p>Our goal with MDAKits is to <strong>lower the barrier for researchers to produce FAIR software</strong>.</p>
 <p>We wish to support developers in creating new pakages, guiding them through the process
 of achieving best practices and FAIR compliance. At the same time, we hope to make MDAnalysis
 useful to a broader community.</p>
-<a class="reference internal image-reference" href="_images/MDAcats_MDAKits.png"><img alt="MDAKits, an ecosystem of downstream packages, may be more sustainable" src="_images/MDAcats_MDAKits.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/MDAcats_MDAKits.png"><img alt="MDAKits, an ecosystem of downstream packages, may be more sustainable" src="_images/MDAcats_MDAKits.png" style="width: 600px;" />
+</a>
 </section>
 <section id="read-our-scipy-proceedings-paper">
 <span id="mdakits-paper"></span><h2>Read our SciPy proceedings paper!<a class="headerlink" href="#read-our-scipy-proceedings-paper" title="Link to this heading"></a></h2>
diff --git a/add.html b/add.html
index 87b5aea3..d8c9c904 100644
--- a/add.html
+++ b/add.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
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+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
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+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
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     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
diff --git a/domhmm.html b/domhmm.html
index d7f01da7..e5bf4d8d 100644
--- a/domhmm.html
+++ b/domhmm.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
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-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
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-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/genindex.html b/genindex.html
index a9973952..4225c31b 100644
--- a/genindex.html
+++ b/genindex.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -26,18 +28,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
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-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="#" />
diff --git a/index.html b/index.html
index 4696c2e2..2c6e31eb 100644
--- a/index.html
+++ b/index.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
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-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
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diff --git a/lipidorderkit.html b/lipidorderkit.html
index 5b2a7d17..b138f204 100644
--- a/lipidorderkit.html
+++ b/lipidorderkit.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
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-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -94,6 +92,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/lipyds.html b/lipyds.html
index bbae733d..de4da0fc 100644
--- a/lipyds.html
+++ b/lipyds.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
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-        <script src="_static/doctools.js?v=9a2dae69"></script>
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-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/maicos.html b/maicos.html
index 1e3e7741..d288ecda 100644
--- a/maicos.html
+++ b/maicos.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
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-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2 current"><a class="current reference internal" href="#">maicos</a><ul>
diff --git a/makingakit.html b/makingakit.html
index f2544951..7010321a 100644
--- a/makingakit.html
+++ b/makingakit.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
diff --git a/mda-tui.html b/mda-tui.html
index 01b04747..ab4aa63b 100644
--- a/mda-tui.html
+++ b/mda-tui.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/mdachecker.html b/mdachecker.html
index b626ab4e..1ae0a827 100644
--- a/mdachecker.html
+++ b/mdachecker.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/mdacli.html b/mdacli.html
index 1a551b58..305ae922 100644
--- a/mdacli.html
+++ b/mdacli.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/mdaencore.html b/mdaencore.html
index 762a5709..fb77e496 100644
--- a/mdaencore.html
+++ b/mdaencore.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,24 +29,20 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="membrane-curvature" href="membrane-curvature.html" />
-    <link rel="prev" title="MDANCE" href="MDANCE.html" /> 
+    <link rel="prev" title="MDonatello" href="MDonatello.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2 current"><a class="current reference internal" href="#">mdaencore</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="#installation-instructions">Installation instructions</a></li>
 </ul>
@@ -187,7 +186,7 @@ <h2>Installation instructions<a class="headerlink" href="#installation-instructi
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="MDANCE.html" class="btn btn-neutral float-left" title="MDANCE" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="MDonatello.html" class="btn btn-neutral float-left" title="MDonatello" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="membrane-curvature.html" class="btn btn-neutral float-right" title="membrane-curvature" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
diff --git a/mdahole2.html b/mdahole2.html
index 86c7ab2e..0cfb63e9 100644
--- a/mdahole2.html
+++ b/mdahole2.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/mdakit-sasa.html b/mdakit-sasa.html
index 3851318e..38c4bffe 100644
--- a/mdakit-sasa.html
+++ b/mdakit-sasa.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/mdakits.html b/mdakits.html
index 75a5e439..69816830 100644
--- a/mdakits.html
+++ b/mdakits.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
@@ -194,97 +193,102 @@ <h1>Registry of MDAnalysis Toolkits (MDAKits)<a class="headerlink" href="#regist
 <td><p><a class="reference external" href="https://github.com/mqcomplab/MDANCE/blob/main/AUTHORS.md">MDANCE authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="MDANCE develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="MDANCE develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="mdaencore.html#mdaencore"><span class="std std-ref">mdaencore</span></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="MDonatello.html#mdonatello"><span class="std std-ref">MDonatello</span></a></p></td>
+<td><p>2D, visualization, jupyter notebook, ipywidgets, rdkit, display</p></td>
+<td><p><a class="reference external" href="https://github.com/talagayev/MDonatello/blob/main/AUTHORS.md">MDonatello authors</a></p></td>
+<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="MDonatello develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="MDonatello develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="mdaencore.html#mdaencore"><span class="std std-ref">mdaencore</span></a></p></td>
 <td><p>ensemble, similarity, covariance, PCA</p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/mdaencore/blob/main/AUTHORS.md">mdaencore authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mdaencore develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mdaencore develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="membrane-curvature.html#membrane-curvature"><span class="std std-ref">membrane-curvature</span></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="membrane-curvature.html#membrane-curvature"><span class="std std-ref">membrane-curvature</span></a></p></td>
 <td><p>membranes, curvature, molecular dynamics</p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/membrane-curvature/blob/main/AUTHORS">membrane-curvature authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="membrane-curvature develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="membrane-curvature develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="maicos.html#maicos"><span class="std std-ref">maicos</span></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="maicos.html#maicos"><span class="std std-ref">maicos</span></a></p></td>
 <td><p>Molecular Dynamics, Confined Systems</p></td>
 <td><p><a class="reference external" href="https://gitlab.com/maicos-devel/maicos/-/blob/main/AUTHORS.rst">maicos authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="maicos develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="maicos develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="mdachecker.html#mdachecker"><span class="std std-ref">mdachecker</span></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="mdachecker.html#mdachecker"><span class="std std-ref">mdachecker</span></a></p></td>
 <td><p>structure analysis, conformation checks</p></td>
 <td><p>IAlibay</p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mdachecker develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mdachecker develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="pytim.html#pytim"><span class="std std-ref">pytim</span></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="pytim.html#pytim"><span class="std std-ref">pytim</span></a></p></td>
 <td><p>Surface analysis, Intrinsic properties</p></td>
 <td><p><a class="reference external" href="https://github.com/Marcello-Sega/pytim/blob/master/AUTHORS.md">pytim authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="pytim develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="pytim develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="mdacli.html#mdacli"><span class="std std-ref">mdacli</span></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="mdacli.html#mdacli"><span class="std std-ref">mdacli</span></a></p></td>
 <td><p>command line interface, molecular-dynamics</p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/mdacli/blob/main/docs/AUTHORS.rst">mdacli authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mdacli develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mdacli develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="ProLIF.html#prolif"><span class="std std-ref">ProLIF</span></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="ProLIF.html#prolif"><span class="std std-ref">ProLIF</span></a></p></td>
 <td><p>drug-design, cheminformatics, molecular-dynamics</p></td>
 <td><p>Cédric Bouysset</p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="mdakit-sasa.html#mdakit-sasa"><span class="std std-ref">mdakit-sasa</span></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="mdakit-sasa.html#mdakit-sasa"><span class="std std-ref">mdakit-sasa</span></a></p></td>
 <td><p>SASA, FreeSASA, ShrakeRupley, LeeRichards</p></td>
 <td><p><a class="reference external" href="https://github.com/pegerto/mdakit_sasa/blob/main/AUTHORS.md">mdakit-sasa authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mdakit-sasa develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mdakit-sasa develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="solvation-analysis.html#solvation-analysis"><span class="std std-ref">solvation-analysis</span></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="solvation-analysis.html#solvation-analysis"><span class="std std-ref">solvation-analysis</span></a></p></td>
 <td><p>chemistry, electrolytes, solvation structure</p></td>
 <td><p>orionarcher, hmacdope, laurlee, IAlibay</p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="solvation-analysis develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="solvation-analysis develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="PathSimAnalysis.html#pathsimanalysis"><span class="std std-ref">PathSimAnalysis</span></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="PathSimAnalysis.html#pathsimanalysis"><span class="std std-ref">PathSimAnalysis</span></a></p></td>
 <td><p>similarity, paths, metrics</p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/PathSimAnalysis/blob/main/AUTHORS.md">PathSimAnalysis authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="PathSimAnalysis develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="PathSimAnalysis develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="OpenMMDL.html#openmmdl"><span class="std std-ref">OpenMMDL</span></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="OpenMMDL.html#openmmdl"><span class="std std-ref">OpenMMDL</span></a></p></td>
 <td><p>MD simulations, Protein-ligand analysis, flask-based webserver, visualization, openmm, rdkit, nglview</p></td>
 <td><p><a class="reference external" href="https://github.com/wolberlab/OpenMMDL/blob/main/AUTHORS.md">OpenMMDL authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="OpenMMDL develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="OpenMMDL develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="spyrmsdkit.html#spyrmsdkit"><span class="std std-ref">spyrmsdkit</span></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="spyrmsdkit.html#spyrmsdkit"><span class="std std-ref">spyrmsdkit</span></a></p></td>
 <td><p>spyrmsd, RMSD, symmetry-corrected RMSD, drug discovery</p></td>
 <td><p><a class="reference external" href="https://github.com/RMeli/spyrmsdkit/blob/main/AUTHORS.md">spyrmsdkit authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="spyrmsdkit develop CI status" src="https://img.shields.io/badge/latest-unavailable-inactive.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="spyrmsdkit develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="lipyds.html#lipyds"><span class="std std-ref">lipyds</span></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="lipyds.html#lipyds"><span class="std std-ref">lipyds</span></a></p></td>
 <td><p>lipids, membranes</p></td>
 <td><p>lilyminium</p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="lipyds develop CI status" src="https://img.shields.io/badge/latest-unavailable-inactive.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="lipyds develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="propkatraj.html#propkatraj"><span class="std std-ref">propkatraj</span></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="propkatraj.html#propkatraj"><span class="std std-ref">propkatraj</span></a></p></td>
 <td><p>pKa, protein</p></td>
 <td><p><a class="reference external" href="https://github.com/Becksteinlab/propkatraj/blob/main/AUTHORS">propkatraj authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="propkatraj develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="propkatraj develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="mdahole2.html#mdahole2"><span class="std std-ref">mdahole2</span></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="mdahole2.html#mdahole2"><span class="std std-ref">mdahole2</span></a></p></td>
 <td><p>pores, ion channels, transporters, HOLE</p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/mdahole2/blob/main/AUTHORS.md">mdahole2 authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mdahole2 develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mdahole2 develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="zarrtraj.html#zarrtraj"><span class="std std-ref">zarrtraj</span></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="zarrtraj.html#zarrtraj"><span class="std std-ref">zarrtraj</span></a></p></td>
 <td><p>streaming, trajectory, zarr, h5md, hdf5, AWS S3 Buckets, Google Cloud Buckets, Azure Blob Storage, Azure Data Lake</p></td>
 <td><p><a class="reference external" href="https://github.com/Becksteinlab/zarrtraj/blob/main/AUTHORS.md">zarrtraj authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="zarrtraj develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="zarrtraj develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="mda-tui.html#mda-tui"><span class="std std-ref">mda-tui</span></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="mda-tui.html#mda-tui"><span class="std std-ref">mda-tui</span></a></p></td>
 <td><p>transformations, TUI</p></td>
 <td><p><a class="reference external" href="https://github.com/p-j-smith/mda-tui/blob/main/AUTHORS.md">mda-tui authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mda-tui develop CI status" src="https://img.shields.io/badge/latest-failed-red.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="mda-tui develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="domhmm.html#domhmm"><span class="std std-ref">domhmm</span></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="domhmm.html#domhmm"><span class="std std-ref">domhmm</span></a></p></td>
 <td><p>membranes, molecular dynamics, nanodomains, microdomains, machine learning</p></td>
 <td><p><a class="reference external" href="https://github.com/BioMemPhys-FAU/domhmm/blob/main/AUTHORS.md">domhmm authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="domhmm develop CI status" src="https://img.shields.io/badge/latest-unavailable-inactive.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="domhmm develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="openmm-mdanalysis-reporter.html#openmm-mdanalysis-reporter"><span class="std std-ref">openmm-mdanalysis-reporter</span></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="openmm-mdanalysis-reporter.html#openmm-mdanalysis-reporter"><span class="std std-ref">openmm-mdanalysis-reporter</span></a></p></td>
 <td><p>OpenMM, Reporters</p></td>
 <td><p><a class="reference external" href="https://github.com/sef43/openmm-mdanalysis-reporter/blob/main/AUTHORS.md">openmm-mdanalysis-reporter authors</a></p></td>
 <td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="openmm-mdanalysis-reporter develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="openmm-mdanalysis-reporter develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
diff --git a/membrane-curvature.html b/membrane-curvature.html
index 0611e7a9..555ac28b 100644
--- a/membrane-curvature.html
+++ b/membrane-curvature.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
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-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
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+      <script src="_static/jquery.js?v=5d32c60e"></script>
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+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2 current"><a class="current reference internal" href="#">membrane-curvature</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="#installation-instructions">Installation instructions</a></li>
diff --git a/objects.inv b/objects.inv
index ee08d82e..1b50539a 100644
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@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
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-        <script src="_static/jquery.js?v=5d32c60e"></script>
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 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
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index 5d528a54..8f55a8aa 100644
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+++ b/propkatraj.html
@@ -14,6 +14,8 @@
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 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
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+++ b/pytim.html
@@ -14,6 +14,8 @@
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     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
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 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
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index 0276058c..a45b8d4c 100644
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index 08556256..776a656b 100644
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+++ b/spyrmsdkit.html
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@@ -91,6 +89,7 @@
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-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -94,6 +92,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/troubleshooting.html b/troubleshooting.html
index d5c8bec8..77701bad 100644
--- a/troubleshooting.html
+++ b/troubleshooting.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
diff --git a/waterdynamics.html b/waterdynamics.html
index 4da53685..08e57ea5 100644
--- a/waterdynamics.html
+++ b/waterdynamics.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -94,6 +92,7 @@
 </li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
diff --git a/zarrtraj.html b/zarrtraj.html
index 83842016..a5d34c01 100644
--- a/zarrtraj.html
+++ b/zarrtraj.html
@@ -14,6 +14,8 @@
   <link rel="shortcut icon" href="_static/mdakits-logo.ico">
 </head>
 
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -27,18 +29,14 @@
 
   
     <link rel="shortcut icon" href="_static/mdakits-logo.ico"/>
-  <!--[if lt IE 9]>
-    <script src="_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="_static/jquery.js?v=5d32c60e"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="_static/doctools.js?v=9a2dae69"></script>
-        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-        <script src="_static/main.js?v=71e46913"></script>
-        <script src="_static/js/versions.js"></script>
+      <script src="_static/jquery.js?v=5d32c60e"></script>
+      <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="_static/documentation_options.js?v=5929fcd5"></script>
+      <script src="_static/doctools.js?v=9a2dae69"></script>
+      <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+      <script src="_static/main.js?v=71e46913"></script>
+      <script src="_static/js/versions.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="about.html" />
     <link rel="index" title="Index" href="genindex.html" />
@@ -91,6 +89,7 @@
 <li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
 <li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
+<li class="toctree-l2"><a class="reference internal" href="MDonatello.html">MDonatello</a></li>
 <li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
 <li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
 <li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>