Issue with installing LIS' fork of iGibson while installing the SVL version works

[yichao-liang]

I was installing iGibson following the instructions here on BCS' OpenMind cluster but it's producing the ModuleNotFoundError: No module named 'cmake' error. I'd really appreciate it if you could give any pointer regarding how to fix this! Thanks so much!

The following are my commands:

$ conda create -n predicators3 python=3.8
$ conda activate predicators3
$ pip install torch==2.0.1 cmake
$ pip install -e ./iGibson

And the following is the error output (where the main issue is with cmake)

(predicators3) ycliang at node107 in /om2/user/ycliang/predicators_behavior on master*
$ pip install -e ./iGibson
Obtaining file:///net/vast-storage/scratch/vast/tenenbaum/ycliang/predicators_behavior/iGibson
  Installing build dependencies ... done
  Checking if build backend supports build_editable ... done
  Getting requirements to build editable ... done
  Preparing editable metadata (pyproject.toml) ... done
Collecting gym>=0.12 (from igibson==2.0.1)
  Using cached gym-0.26.2-py3-none-any.whl
Collecting numpy>=1.16.0 (from igibson==2.0.1)
  Using cached numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.6 kB)
Collecting scipy>=1.2.1 (from igibson==2.0.1)
  Using cached scipy-1.10.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.5 MB)
Collecting pybullet-svl>=3.1.6 (from igibson==2.0.1)
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Collecting transforms3d>=0.3.1 (from igibson==2.0.1)
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Collecting opencv-python>=3.4.8 (from igibson==2.0.1)
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Collecting Pillow>=5.4.0 (from igibson==2.0.1)
  Using cached Pillow-10.1.0-cp38-cp38-manylinux_2_28_x86_64.whl.metadata (9.5 kB)
Requirement already satisfied: networkx>=2.0 in /net/vast-storage/scratch/vast/tenenbaum/ycliang/miniconda3/envs/predicators3/lib/python3.8/site-packages (from igibson==2.0.1) (3.1)
Collecting PyYAML (from igibson==2.0.1)
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Collecting tqdm (from igibson==2.0.1)
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Collecting freetype-py (from igibson==2.0.1)
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Collecting matplotlib (from igibson==2.0.1)
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Collecting cloudpickle (from igibson==2.0.1)
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Collecting aenum (from igibson==2.0.1)
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Collecting GPUtil (from igibson==2.0.1)
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Collecting pytest (from igibson==2.0.1)
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Collecting future (from igibson==2.0.1)
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Collecting trimesh (from igibson==2.0.1)
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Collecting sphinx-markdown-tables (from igibson==2.0.1)
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Collecting sphinx>=1.8.0 (from igibson==2.0.1)
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Collecting recommonmark (from igibson==2.0.1)
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Collecting sphinx-rtd-theme (from igibson==2.0.1)
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Collecting h5py (from igibson==2.0.1)
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Collecting gitpython (from igibson==2.0.1)
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Collecting py360convert (from igibson==2.0.1)
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Requirement already satisfied: Jinja2>=3.0 in /net/vast-storage/scratch/vast/tenenbaum/ycliang/miniconda3/envs/predicators3/lib/python3.8/site-packages (from sphinx>=1.8.0->igibson==2.0.1) (3.1.2)
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Collecting packaging>=21.0 (from sphinx>=1.8.0->igibson==2.0.1)
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Requirement already satisfied: typing-extensions in /net/vast-storage/scratch/vast/tenenbaum/ycliang/miniconda3/envs/predicators3/lib/python3.8/site-packages (from ipython->igibson==2.0.1) (4.9.0)
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Collecting cycler>=0.10 (from matplotlib->igibson==2.0.1)
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Collecting fonttools>=4.22.0 (from matplotlib->igibson==2.0.1)
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Collecting python-dateutil>=2.7 (from matplotlib->igibson==2.0.1)
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Requirement already satisfied: setuptools in /net/vast-storage/scratch/vast/tenenbaum/ycliang/miniconda3/envs/predicators3/lib/python3.8/site-packages (from imageio-ffmpeg>=0.2.0->moviepy->igibson==2.0.1) (68.2.2)
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Requirement already satisfied: MarkupSafe>=2.0 in /net/vast-storage/scratch/vast/tenenbaum/ycliang/miniconda3/envs/predicators3/lib/python3.8/site-packages (from Jinja2>=3.0->sphinx>=1.8.0->igibson==2.0.1) (2.1.3)
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Building wheels for collected packages: igibson
  Building editable for igibson (pyproject.toml) ... error
  error: subprocess-exited-with-error

  × Building editable for igibson (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [117 lines of output]
      running editable_wheel
      creating /tmp/pip-wheel-h2q8mohk/.tmp-4o9dj19o/igibson.egg-info
      writing /tmp/pip-wheel-h2q8mohk/.tmp-4o9dj19o/igibson.egg-info/PKG-INFO
      writing dependency_links to /tmp/pip-wheel-h2q8mohk/.tmp-4o9dj19o/igibson.egg-info/dependency_links.txt
      writing requirements to /tmp/pip-wheel-h2q8mohk/.tmp-4o9dj19o/igibson.egg-info/requires.txt
      writing top-level names to /tmp/pip-wheel-h2q8mohk/.tmp-4o9dj19o/igibson.egg-info/top_level.txt
      writing manifest file '/tmp/pip-wheel-h2q8mohk/.tmp-4o9dj19o/igibson.egg-info/SOURCES.txt'
      reading manifest file '/tmp/pip-wheel-h2q8mohk/.tmp-4o9dj19o/igibson.egg-info/SOURCES.txt'
      reading manifest template 'MANIFEST.in'
      adding license file 'LICENSE'
      writing manifest file '/tmp/pip-wheel-h2q8mohk/.tmp-4o9dj19o/igibson.egg-info/SOURCES.txt'
      creating '/tmp/pip-wheel-h2q8mohk/.tmp-4o9dj19o/igibson-2.0.1.dist-info'
      creating /tmp/pip-wheel-h2q8mohk/.tmp-4o9dj19o/igibson-2.0.1.dist-info/WHEEL
      running build_py
      running build_ext
      Traceback (most recent call last):
        File "/om2/user/ycliang/miniconda3/envs/predicators3/bin/cmake", line 5, in <module>
          from cmake import cmake
      ModuleNotFoundError: No module named 'cmake'
      Traceback (most recent call last):
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 156, in run
          self._create_wheel_file(bdist_wheel)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 345, in _create_wheel_file
          files, mapping = self._run_build_commands(dist_name, unpacked, lib, tmp)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 268, in _run_build_commands
          self._run_build_subcommands()
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 295, in _run_build_subcommands
          self.run_command(name)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
          self.distribution.run_command(command)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/dist.py", line 963, in run_command
          super().run_command(command)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
          cmd_obj.run()
        File "<string>", line 44, in run
        File "/om2/user/ycliang/miniconda3/envs/predicators3/lib/python3.8/subprocess.py", line 415, in check_output
          return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
        File "/om2/user/ycliang/miniconda3/envs/predicators3/lib/python3.8/subprocess.py", line 516, in run
          raise CalledProcessError(retcode, process.args,
      subprocess.CalledProcessError: Command '['cmake', '--version']' returned non-zero exit status 1.
      /tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/_distutils/dist.py:988: _DebuggingTips: Problem in editable installation.
      !!

              ********************************************************************************
              An error happened while installing `igibson` in editable mode.

              The following steps are recommended to help debug this problem:

              - Try to install the project normally, without using the editable mode.
                Does the error still persist?
                (If it does, try fixing the problem before attempting the editable mode).
              - If you are using binary extensions, make sure you have all OS-level
                dependencies installed (e.g. compilers, toolchains, binary libraries, ...).
              - Try the latest version of setuptools (maybe the error was already fixed).
              - If you (or your project dependencies) are using any setuptools extension
                or customization, make sure they support the editable mode.

              After following the steps above, if the problem still persists and
              you think this is related to how setuptools handles editable installations,
              please submit a reproducible example
              (see https://stackoverflow.com/help/minimal-reproducible-example) to:

                  https://github.com/pypa/setuptools/issues

              See https://setuptools.pypa.io/en/latest/userguide/development_mode.html for details.
              ********************************************************************************

      !!
        cmd_obj.run()
      Traceback (most recent call last):
        File "/om2/user/ycliang/miniconda3/envs/predicators3/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
          main()
        File "/om2/user/ycliang/miniconda3/envs/predicators3/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
        File "/om2/user/ycliang/miniconda3/envs/predicators3/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 273, in build_editable
          return hook(wheel_directory, config_settings, metadata_directory)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 436, in build_editable
          return self._build_with_temp_dir(
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 389, in _build_with_temp_dir
          self.run_setup()
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 480, in run_setup
          super(_BuildMetaLegacyBackend, self).run_setup(setup_script=setup_script)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 311, in run_setup
          exec(code, locals())
        File "<string>", line 127, in <module>
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/__init__.py", line 103, in setup
          return distutils.core.setup(**attrs)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/_distutils/core.py", line 185, in setup
          return run_commands(dist)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
          dist.run_commands()
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
          self.run_command(cmd)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/dist.py", line 963, in run_command
          super().run_command(command)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
          cmd_obj.run()
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 156, in run
          self._create_wheel_file(bdist_wheel)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 345, in _create_wheel_file
          files, mapping = self._run_build_commands(dist_name, unpacked, lib, tmp)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 268, in _run_build_commands
          self._run_build_subcommands()
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 295, in _run_build_subcommands
          self.run_command(name)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
          self.distribution.run_command(command)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/dist.py", line 963, in run_command
          super().run_command(command)
        File "/tmp/pip-build-env-ateioi2h/overlay/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
          cmd_obj.run()
        File "<string>", line 44, in run
        File "/om2/user/ycliang/miniconda3/envs/predicators3/lib/python3.8/subprocess.py", line 415, in check_output
          return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
        File "/om2/user/ycliang/miniconda3/envs/predicators3/lib/python3.8/subprocess.py", line 516, in run
          raise CalledProcessError(retcode, process.args,
      subprocess.CalledProcessError: Command '['cmake', '--version']' returned non-zero exit status 1.
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building editable for igibson
Failed to build igibson
ERROR: Could not build wheels for igibson, which is required to install pyproject.toml-based projects