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@article{ goodmal-etal-ploscompbio14,
title = {Ten Simple Rules for the Care and Feeding of Scientific Data},
author = {Alyssa Goodman and Alberto Pepe and Alexander W. Blocker and Christine L. Borgman and Kyle Cranmer and Merce Crosas and Rosanne Di Stefano and Yolanda Gil and Paul Groth and Margaret Hedstrom and David W. Hogg and Vinay Kashyap and Ashish Mahabal and Aneta Siemiginowska and Aleksandra Slavkovic},
journal = {To appear in PLOS Computational Biology},
year = {2014},
note = {Forthcoming},
url = { http://arxiv.org/abs/1401.2134}
}
@article{ gil-tiis13,
title = {Human Tutorial Instruction in the Raw},
author = {Yolanda Gil},
journal = {ACM Transactions on Interactive Intelligent Systems},
note = {Forthcoming},
year = {2014}
}
@article{ garijo-etal-plosone13,
title = {Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome},
author = {Daniel Garijo and Sarah Kinnings and Li Xie and Lei Xie and Yinliang Zhang and Philip E. Bourne and Yolanda Gil},
journal = {PLOS ONE},
year = {2013},
ee = {http://dx.doi.org/10.1371/journal.pone.0080278}
}
@article{ garijo-etal-fgcs13,
title = {Common Motifs in Scientific Workflows: An Empirical Analysis},
author = {Daniel Garijo and Pinar Alper and Khalid Belhajjame and Oscar Corcho and Yolanda Gil and Carole Goble},
year = {2013},
journal = {Future Generation Computer Systems},
ee = {http://dx.doi.org/10.1016/j.future.2013.09.018}
}
@article{ sethi-etal-prl13,
title = {Structured Analysis of the ISI Atomic Pair Actions Dataset Using Workflows},
author = {Ricky J. Sethi and Hyunjoon Jo and Yolanda Gil},
volume = {34},
number = {15},
year = {2013},
journal = {Pattern Recognition Letters},
ee = {http://dx.doi.org/10.1016/j.patrec.2012.12.015}
}
@inproceedings{ gil-etal-icsc13,
title = {The Democratization of Semantic Properties: An Analysis of Semantic Wikis},
author = {Yolanda Gil and Angela Knight and Kevin Zhang and Larry Zhang and Varun Ratnakar and Ricky Sethi},
year = {2013},
address = {Irvine, CA},
booktitle = {Seventh IEEE International Conference on Semantic Computing (ICSC)},
url = { http://www.isi.edu/~gil/papers/gil-etal-icsc13.pdf}
}
@inproceedings{ gil-ratnakar-kcap13,
title = {Knowledge Capture in the Wild: A Perspective from Semantic Wiki Communities},
author = {Yolanda Gil and Varun Ratnakar},
year = {2013},
address = {Banff, Canada},
booktitle = {Seventh ACM International Conference on Knowledge Capture (K-CAP)},
url = { http://www.isi.edu/~gil/papers/gil-ratnakar-kcap13.pdf}
}
@inproceedings{ garijo-etal-kcap13,
title = {Detecting Common Scientific Workflow Fragments Using Templates and Execution Provenance},
author = {Daniel Garijo and Oscar Corcho and Yolanda Gil},
year = {2013},
address = {Banff, Canada},
booktitle = {Seventh ACM International Conference on Knowledge Capture (K-CAP)},
url = { http://www.isi.edu/~gil/papers/garijo-etal-kcap13.pdf}
}
@incollection{ gil-handbookhc13,
title = {Social Knowledge Collection},
author = {Yolanda Gil},
year = {2013},
booktitle = {Handbook of Human Computation},
editors = {Pietro Michelucci},
publisher = {Springer},
url = { http://www.isi.edu/~gil/papers/gil-handbookhc13.pdf},
ee = {http://www.springer.com/computer/ai/book/978-1-4614-8805-7}
}
@inproceedings{ gil-etal-hiai13,
title = {Using Semantic Workflows to Disseminate Best Practices and Accelerate Discoveries in Multi-Omic Data Analysis},
author = {Yolanda Gil and Shannon McWeeney and Christopher E. Mason},
year = {2013},
address = {Bellevue, WA},
booktitle = {AAAI Workshop on Expanding the Boundaries of Health Informatics using AI (HIAI), held in conjunction with the Conference of the Association for the Advancement of Artificial Intelligence (AAAI)},
url = { http://www.isi.edu/~gil/papers/gil-etal-hiai13.pdf}
}
@misc{ gil-etal-cbbw13,
title = {Intelligent Assistance to Disseminate Best Practices and Accelerate Discoveries in Cancer Omics},
author = {Yolanda Gil and Christopher E. Mason and Christina Zheng and Shannon McWeeney},
year = {2013},
note = {2013 NCI EDRN Cancer Biomarkers Bioinformatics Workshop, Pasadena, CA},
url = { http://www.isi.edu/~gil/papers/gil-etal-cbbw13.pdf}
}
@inproceedings{ gil-isi13,
title = {Towards Task-Centered Network Models through Semantic Workflows},
author = {Yolanda Gil},
year = {2013},
address = {Seattle, WA},
booktitle = {Proceedings of the IEEE Conference on Intelligence and Security Informatics (ISI)},
url = { http://www.isi.edu/~gil/papers/gil-isi13.pdf}
}
@inproceedings{ gil-etal-iui13,
title = {An Initial Analysis of Semantic Wikis},
author = {Yolanda Gil and Angela Knight and Kevin Zhang and Larry Zhang and Ricky Sethi},
booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI)},
address = {Santa Monica, CA},
year = {2013},
url = { http://www.isi.edu/~gil/papers/gil-etal-iui13.pdf }
}
@article{ gil-hirsh-aimag13,
title = {The AAAI Fall Symposium on "Discovery Informatics: The Role of AI Research in Innovating Scientific Processes},
author = {Yolanda Gil and Haym Hirsh},
year = {2013},
journal = {AI Magazine},
volume = {34},
number = {1},
url = { http://www.isi.edu/~gil/papers/gil-hirsh-aimag13.pdf}
}
@misc{ w3c-provenance-dm-13,
title = {PROV-DM: The PROV Data Model},
author = {Luc Moreau and Paolo Missier and Khalid Belhajjame and Reza B'Far and James Cheney and Sam Coppens and Stephen Cresswell and Yolanda Gil and Paul Groth and Graham Klyne and Timothy Lebo and Jim McCusker and Simon Miles and James Myers and Satya Sahoo and Curt Tilmes},
note = {World Wide Web (W3C)},
year = {2013},
url = { http://www.w3.org/TR/prov-dm/ }
}
@misc{ mccann-etal-ocean12,
title = {Scientific Workflows: The Key to Convergence?},
author = {Mike P. McCann and Andreas F. Hofmann and Thomas C. Harmon and Yolanda Gil},
year = {2012},
note = {Ocean Sciences Meeting, Salt Lake City, Utah}
}
@misc{ gil-etal-agu12,
title = {Designing a Roadmap for Workflow Cyberinfrastructure in the Geosciences: From Big Data to the Long Tail},
author = {Yolanda Gil and Ewa Deelman and Ibrahim Demir and Chris Duffy and Marlon Pierce and Suresh Marru and Gerry Wiener},
year = {2012},
note = {American Geophysical Union Fall Meeting, San Francisco, CA}
}
@misc{ gil-etal-ismb12,
title = {Using Semantic Workflows for Genome-Scale Analysis},
author = {Yolanda Gil and Varun Ratnakar and Ewa Deelman and Christopher Mason},
year = {2012},
note = {International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA}
}
@article{ duffy-etal-eos12,
title = {Designing a Roadmap for Geoscience Workflows},
author = {Christopher Duffy and Yolanda Gil and Ewa Deelman and Suresh Marru and Marlon Pierce and Ibrahim Demir and Gerry Wiener},
journal = {Eos Transactions of the American Geophysical Union},
volume = {93},
number = {24},
year = {2012},
url = {http://www.agu.org/pubs/crossref/2012/2012EO240002.shtml}
}
@misc{ ec-workflows-report-12,
title = {EarthCube Report on a Workflows Roadmap for the Geosciences},
author = {Ewa Deelman and Chris Duffy and Yolanda Gil and Suresh Marru and Marlon Pierce and Gerry Wiener},
note = {National Science Foundation, Arlington, VA.},
year = {2012},
url = { http://www.isi.edu/~gil/EarthCube/EC-WorkflowsRoadmap-September2012.pdf },
ee = {http://www.isi.edu/nsf-workflows06}
}
@misc{ diw-report-12,
title = {Final Report of the 2012 NSF Workshop on Discovery Informatics},
author = {Yolanda Gil and Haym Hirsh},
note = {National Science Foundation, Arlington, VA.},
year = {2012},
url = { http://www.isi.edu/~gil/diw2012/NSFDiscoveryInformatics2012-FinalReport.pdf },
ee = {http://www.discoveryinformaticsinitiative.org/diw2012}
}
@inproceedings{ sethi-etal-works12,
title = {Reusing Workflow Fragments Across Multiple Data Domains},
author = {Ricky J. Sethi and Hyunjoon Jo and Yolanda Gil},
year = {2012},
address = {Salt Lake City, Utah},
booktitle = {Proceedings of the Seventh Workshop on Workflows in Support of Large-Scale Science (WORKS'12), held in conjunction with SC 2012},
url = { http://www.isi.edu/~gil/papers/sethi-etal-works12.pdf }
}