issue with n5-spark-tools version in public.ecr.aws

[piotrsan]

Hello,

When trying to use the automatic neuron segmentation workflow, I ran into trouble, getting the following error:

I solved the problem by changing params/neuron_params.nf (spark_container_version: '3.9.0'. > spark_container_version: '3.11.0'). When I checked in public.ecr.aws I noticed only the 3.11.0 version is available. The change allowed me to run the workflow to completion.

Please let me know if it is fine to use the other version of the container or if a different container needs to be uploaded in public.ecr.aws.

Thanks,

Piero

[cgoina]

I thought I had 3.11.0 everywhere but I found now that connected components was still configured with 3.9.0 - that should be fixed now