pyproject.toml

[tool.poetry]
name = "janelia-emrp"
version = "0.1.0"
description = "Pipeline scripts and tools for reconstructing Electron Microscopy volumes."
authors = ["Eric Trautman <trautmane@janelia.hhmi.org>"]
license = 'BSD-3-Clause'

[tool.poetry.dependencies]
python = "^3.9"
fibsem-tools = "0.3.1"
render-python = {git = "https://github.com/AllenInstitute/render-python.git"}
dask-janelia = "^0.1.4"
bokeh = "^2.3.3"
h5py = "^3.6.0"
pytest = "^7.1.1"
xarray-multiscale = "0.3.1"
pydantic = "^1.9.0"
numpy = "1.21.0"
scikit-image = "0.19.3"

[tool.poetry.dev-dependencies]

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

# see https://docs.pytest.org/en/stable/how-to/capture-warnings.html
[tool.pytest.ini_options]
filterwarnings = [
    "ignore:::dask_jobqueue[.*]",
    "ignore:::distutils[.*]",
    "ignore:::fibsem_tools[.*]",
    "ignore:::pandas[.*]",
    "ignore:::renderapi[.*]",
    "ignore:::requests[.*]",
    "ignore:::tensorstore",        # TODO: why does tensorstore filter not work?
    "ignore:DeprecationWarning::"  # TODO: remove when tensorstore filter is fixed
]