From 649ef6b384773b0fd86c5d0e222a245835156a21 Mon Sep 17 00:00:00 2001 From: Matt McCormick Date: Wed, 23 Oct 2024 22:23:42 -0400 Subject: [PATCH] build(compare-meshes): add pixi python configuration --- packages/compare-meshes/.gitignore | 1 + packages/compare-meshes/.npmrc | 1 + packages/compare-meshes/package.json | 17 +- packages/compare-meshes/pixi.lock | 8235 +++++++++++++++++ packages/compare-meshes/pixi.toml | 140 + packages/compare-meshes/pnpm-workspace.yaml | 2 - .../compare-meshes/typescript/package.json | 3 +- packages/mesh-io/typescript/package.json | 1 - pnpm-lock.yaml | 5 +- 9 files changed, 8385 insertions(+), 20 deletions(-) create mode 100644 packages/compare-meshes/.npmrc create mode 100644 packages/compare-meshes/pixi.lock create mode 100644 packages/compare-meshes/pixi.toml delete mode 100644 packages/compare-meshes/pnpm-workspace.yaml diff --git a/packages/compare-meshes/.gitignore b/packages/compare-meshes/.gitignore index 055027bc2..417541325 100644 --- a/packages/compare-meshes/.gitignore +++ b/packages/compare-meshes/.gitignore @@ -7,3 +7,4 @@ test typescript/src/version.ts typescript/dist typescript/demo-app +pyodide/ diff --git a/packages/compare-meshes/.npmrc b/packages/compare-meshes/.npmrc new file mode 100644 index 000000000..a4be22c92 --- /dev/null +++ b/packages/compare-meshes/.npmrc @@ -0,0 +1 @@ +git-checks=false diff --git a/packages/compare-meshes/package.json b/packages/compare-meshes/package.json index b452f6b70..17ccda8c8 100644 --- a/packages/compare-meshes/package.json +++ b/packages/compare-meshes/package.json @@ -1,9 +1,8 @@ { "name": "@itk-wasm/compare-meshes-build", - "version": "0.1.0", + "version": "0.4.1", "private": true, - "packageManager": "pnpm@9.6.0", - "description": "Scripts to generate compare-meshes itk-wasm artifacts.", + "description": "@itk-wasm/compare-meshes build configuration.", "type": "module", "itk-wasm": { "emscripten-docker-image": "itkwasm/emscripten:latest", @@ -28,22 +27,18 @@ "bindgen:typescript": "itk-wasm pnpm-script bindgen:typescript", "bindgen:python": "itk-wasm pnpm-script bindgen:python", "build:gen:typescript": "itk-wasm pnpm-script build:gen:typescript", - "build:gen:python": "itk-wasm pnpm-script build:gen:python", - "build:micromamba": "itk-wasm pnpm-script build:micromamba", - "build:python:versionSync": "itk-wasm pnpm-script build:python:versionSync", - "publish:python": "itk-wasm pnpm-script publish:python", + "build:gen:python": "pnpm build:wasi && pnpm bindgen:python", "test": "pnpm test:data:download && pnpm build:gen:python && pnpm test:python", "test:data:download": "dam download test/data test/data.tar.gz bafkreidioh62iouwzrrpavx7g72fdjxze7gp4cqpf36t4pdafcpcmx4zye https://github.com/InsightSoftwareConsortium/ITK-Wasm/releases/download/itk-wasm-v1.0.0-b.171/itkwasm-compare-meshes-test-data.tar.gz", "test:data:pack": "dam pack test/data test/data.tar.gz", - "test:python:wasi": "itk-wasm pnpm-script test:python:wasi", - "test:python:emscripten": "itk-wasm pnpm-script test:python:emscripten", - "test:python:dispatch": "itk-wasm pnpm-script test:python:emscripten", + "test:python:wasi": "pnpm test:data:download && pixi run test-wasi", + "test:python:emscripten": "pnpm test:data:download && pixi run test-emscripten", + "test:python:dispatch": "pnpm test:data:download && pixi run test-dispatch", "test:python": "itk-wasm pnpm-script test:python", "test:wasi": "itk-wasm pnpm-script test:wasi" }, "devDependencies": { "@itk-wasm/dam": "^1.1.1", - "@thewtex/setup-micromamba": "^1.9.7", "itk-wasm": "workspace:^", "@itk-wasm/mesh-io-build": "workspace:^", "@itk-wasm/compare-meshes-build": "workspace:^" diff --git a/packages/compare-meshes/pixi.lock b/packages/compare-meshes/pixi.lock new file mode 100644 index 000000000..8b293664b --- /dev/null +++ b/packages/compare-meshes/pixi.lock @@ -0,0 +1,8235 @@ +version: 5 +environments: + default: + channels: + - url: https://conda.anaconda.org/conda-forge/ + packages: 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meshes with a tolerance for regression testing." +name = "compare-meshes" +platforms = ["win-64", "linux-64", "linux-aarch64", "osx-arm64"] +version = "0.1.0" + +[tasks] + +[dependencies] +python = "3.12.*" +pnpm = ">=9.12.1,<10" +hatch = ">=1.13.0,<2" +pip = ">=24.2,<25" + +[target.win-64.dependencies] +m2w64-jq = ">=1.6.0,<2" + +[target.unix.dependencies] +jq = ">=1.7.1,<2" + +[tasks.version-sync-typescript] +cmd = '''version=$(cat package.json | jq .version) && + jq ".version = $version" typescript/package.json > typescript/package.json.tmp && + mv typescript/package.json.tmp typescript/package.json''' + +[tasks.version-sync-python-wasi] +cmd = '''version=$(cat ../../package.json | jq -r .version) && + echo "version is $version" && + hatch version $version''' +cwd = "python/itkwasm-compare-meshes-wasi" + +[tasks.version-sync-python-emscripten] +cmd = '''version=$(cat ../../package.json | jq -r .version) && + hatch version $version''' +cwd = "python/itkwasm-compare-meshes-emscripten" + +[tasks.version-sync-python-dispatch] +cmd = '''version=$(cat ../../package.json | jq -r .version) && + hatch version $version''' +cwd = "python/itkwasm-compare-meshes" + +[tasks.version-sync] +depends-on = ["version-sync-typescript", "version-sync-python-wasi", "version-sync-python-emscripten", "version-sync-python-dispatch"] +description = "Synchronize package versions" + +[tasks.publish-typescript] +cmd = "pnpm publish --filter \"{typescript}\"" + +[tasks.publish-python-user-check] +cmd = "if [ -n \"$HATCH_INDEX_USER\"]; then echo \"HATCH_INDEX_USER is set\"; else echo \"HATCH_INDEX_USER is not set\"; exit 1; fi" + +[tasks.publish-python-wasi] +cmd = '''hatch build && + hatch publish''' +cwd = "python/itkwasm-compare-meshes-wasi" + +[tasks.publish-python-emscripten] +cmd = '''hatch build && + hatch publish''' +cwd = "python/itkwasm-compare-meshes-emscripten" + +[tasks.publish-python-dispatch] +cmd = '''hatch build && + hatch publish''' +cwd = "python/itkwasm-compare-meshes" + +[tasks.publish] +depends-on = ["publish-typescript", "publish-python-wasi", "publish-python-emscripten", "publish-python-dispatch"] +description = "Synchronize package versions" + +[feature.python.dependencies] +pytest = ">=8.3.3,<9" + +[feature.python.pypi-dependencies] +itkwasm-compare-meshes-wasi = { path = "python/itkwasm-compare-meshes-wasi", editable = true } +itkwasm-compare-meshes = { path = "python/itkwasm-compare-meshes", editable = true } +pyodide-py = ">=0.26.3, <0.27" +pytest-pyodide = ">=0.58.3, <0.59" +itk-webassemblyinterface = ">=1.0b175, <2" +itkwasm-image-io = ">=1.3.0, <2" + +[feature.python.tasks.test-wasi] +cmd = "pytest" +cwd = "python/itkwasm-compare-meshes-wasi" +description = "Run tests for itkwasm-compare-meshes-wasi" + +[feature.python.tasks.download-pyodide] +cmd = '''curl -L https://github.com/pyodide/pyodide/releases/download/0.26.3/pyodide-0.26.3.tar.bz2 -o pyodide.tar.bz2 && + tar xjf pyodide.tar.bz2 && + rm pyodide.tar.bz2''' +outputs = ["pyodide"] +description = "Download Pyodide" + +[feature.python.tasks.test-emscripten] +cmd = '''mkdir -p dist/pyodide && + cp -r ../../pyodide dist/ && + hatch build -t wheel ./dist/pyodide/ && + pytest --dist-dir=./dist/pyodide --rt=chrome''' +cwd = "python/itkwasm-compare-meshes-emscripten" +depends-on = ["download-pyodide"] +description = "Run tests for itkwasm-compare-meshes-emscripten" + +[feature.python.tasks.serve-emscripten] +cmd = '''mkdir -p dist/pyodide && + cp -r ../../pyodide dist/ && + hatch build -t wheel ./dist/pyodide/ && + echo \"\nVisit http://localhost:8877/console.html\n\" && + python -m http.server --directory=./dist/pyodide 8877''' +cwd = "python/itkwasm-compare-meshes-emscripten" +depends-on = ["download-pyodide"] +description = "Serve itkwasm-compare-meshes-emscripten for development" + +[feature.python.tasks.test-dispatch] +cmd = '''mkdir -p dist/pyodide && + cp -r ../../pyodide dist/ && + hatch build -t wheel ./dist/pyodide/ && + cp ../itkwasm-compare-meshes-emscripten/dist/pyodide/itkwasm_compare_meshes_emscripten*.whl ./dist/pyodide/ && + pytest --dist-dir=./dist/pyodide --rt=chrome''' +cwd = "python/itkwasm-compare-meshes" +depends-on = ["download-pyodide"] +description = "Run tests for itkwasm-compare-meshes" + +[feature.python.tasks.serve-dispatch] +cmd = '''mkdir -p dist/pyodide && + cp -r ../../pyodide dist/ && + hatch build -t wheel ./dist/pyodide/ && + echo \"\nVisit http://localhost:8877/console.html\n\" && + python -m http.server --directory=./dist/pyodide 8877''' +cwd = "python/itkwasm-compare-meshes" +depends-on = ["download-pyodide"] +description = "Serve itkwasm-compare-meshes for development" + +[feature.python.tasks.test-python] +depends-on = ["test-wasi", "test-emscripten", "test-dispatch"] +description = "Run tests for all Python packages" + +[environments] +python = ["python"] diff --git a/packages/compare-meshes/pnpm-workspace.yaml b/packages/compare-meshes/pnpm-workspace.yaml deleted file mode 100644 index 27c86b747..000000000 --- a/packages/compare-meshes/pnpm-workspace.yaml +++ /dev/null @@ -1,2 +0,0 @@ -packages: - - 'typescript' diff --git a/packages/compare-meshes/typescript/package.json b/packages/compare-meshes/typescript/package.json index 75928de3d..eebc9711b 100644 --- a/packages/compare-meshes/typescript/package.json +++ b/packages/compare-meshes/typescript/package.json @@ -1,7 +1,6 @@ { "name": "@itk-wasm/compare-meshes", "version": "0.4.0", - "packageManager": "pnpm@9.6.0", "description": "Compare meshes and polydata for regression testing.", "type": "module", "module": "./dist/index.js", @@ -37,7 +36,7 @@ "itk-wasm": "workspace:^" }, "devDependencies": { - "@itk-wasm/mesh-io": "workspace:^", + "@itk-wasm/mesh-io": "workspace:*", "@itk-wasm/demo-app": "workspace:*", "@types/node": "^20.2.5", "esbuild": "^0.19.8", diff --git a/packages/mesh-io/typescript/package.json b/packages/mesh-io/typescript/package.json index 21f157271..3d48a6902 100644 --- a/packages/mesh-io/typescript/package.json +++ b/packages/mesh-io/typescript/package.json @@ -1,7 +1,6 @@ { "name": "@itk-wasm/mesh-io", "version": "1.4.1", - "packageManager": "pnpm@9.6.0", "description": "Input and output for scientific and medical image file formats.", "type": "module", "module": "./dist/index.js", diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index c9cbe7102..833f11a83 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -206,9 +206,6 @@ importers: '@itk-wasm/mesh-io-build': specifier: workspace:^ version: link:../mesh-io - '@thewtex/setup-micromamba': - specifier: ^1.9.7 - version: 1.9.7 itk-wasm: specifier: workspace:^ version: link:../core/typescript/itk-wasm @@ -223,7 +220,7 @@ importers: specifier: workspace:* version: link:../../core/typescript/demo-app '@itk-wasm/mesh-io': - specifier: workspace:^ + specifier: workspace:* version: link:../../mesh-io/typescript '@types/node': specifier: ^20.2.5