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Output sssom mapping files rather than (just) owl #293

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matentzn opened this issue Jun 29, 2022 · 1 comment
Open

Output sssom mapping files rather than (just) owl #293

matentzn opened this issue Jun 29, 2022 · 1 comment

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@matentzn
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For working with boomer more seemlessly, it would be great if it could output the results as a table:

mapping_set_id: https://w3id.org/boomer/s8169763872632786387263
license: https://creativecommons.org/publicdomain/zero/1.0/
curie_map:
  UBERON: http...
  FMA: http...
subject_id subject_label predicate_id object_id object_label confidence mapping_justification
UBERON:123 heart skos:exactMatch FMA:321 heart 0.9 semapv:UnspecifiedMatching
UBERON:123 soul skos:exactMatch FMA:321 human soul 0.9 semapv:UnspecifiedMatching
@matentzn matentzn changed the title Output sssom mapping files rather than owl Output sssom mapping files rather than (just) owl Jun 29, 2022
@matentzn
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I could see something like:

-O/--output-format sssom, owl

and when sssom us chosen, to default to the skos vocabulary rather than owl? Maybe this eventually needs a different option, but for now, this would suit us very well.

@balhoff balhoff added this to the Mondo workflow milestone Jan 30, 2023
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