From ab3b181e2ab46f300db29f8935577ad7dc71b8cf Mon Sep 17 00:00:00 2001 From: Maren Philipps Date: Mon, 21 Oct 2024 20:11:57 +0200 Subject: [PATCH] update preprint to article --- doc/using_pypesto.bib | 16 +++++++++------- 1 file changed, 9 insertions(+), 7 deletions(-) diff --git a/doc/using_pypesto.bib b/doc/using_pypesto.bib index 890cedc88..c4c85924d 100644 --- a/doc/using_pypesto.bib +++ b/doc/using_pypesto.bib @@ -293,16 +293,18 @@ @Misc{LakrisenkoPat2024 primaryclass = {q-bio.QM}, } -@Misc{PhilippsKoe2024, +@Article{PhilippsKoe2024, author = {Maren Philipps and Antonia Körner and Jakob Vanhoefer and Dilan Pathirana and Jan Hasenauer}, title = {Non-Negative Universal Differential Equations With Applications in Systems Biology}, year = {2024}, - archiveprefix = {arXiv}, - creationdate = {2024-06-28T08:40:06}, - eprint = {2406.14246}, - modificationdate = {2024-06-28T08:40:06}, - primaryclass = {q-bio.QM}, - url = {https://arxiv.org/abs/2406.14246}, + journal = {IFAC-PapersOnLine}, + volume = {58}, + number = {23}, + pages = {25-30}, + issn = {2405-8963}, + doi = {https://doi.org/10.1016/j.ifacol.2024.10.005}, + url = {https://www.sciencedirect.com/science/article/pii/S2405896324017518}, + abstract = {Universal differential equations (UDEs) leverage the respective advantages of mechanistic models and artificial neural networks and combine them into one dynamic model. However, these hybrid models can suffer from unrealistic solutions, such as negative values for biochemical quantities. We present non-negative UDE (nUDEs), a constrained UDE variant that guarantees non-negative values. Furthermore, we explore regularisation techniques to improve generalisation and interpretability of UDEs.} } @Article{SchmiesterBra2024,