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What should the compact form of /peptidoforms return? #63

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edeutsch opened this issue Mar 6, 2020 · 2 comments
Open

What should the compact form of /peptidoforms return? #63

edeutsch opened this issue Mar 6, 2020 · 2 comments
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@ypriverol @edeutsch

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@edeutsch
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edeutsch commented Mar 6, 2020

I don't think have not specified what the compact form should return for /peptidoforms

PeptideAtlas now implements
{
"countDatasets": 2,
"countPSM": 7,
"peptidoform": "[iTRAQ]-AAHEEIC[Carbamidomethyl]TTNEGVMYR"
}

good? changes? I suppose the only required field it peptidoform. Should it just be the required field peptidoform only?

http://www.peptideatlas.org/api/proxi/v0.1/peptidoforms?resultType=compact&peptideSequence=AAHEEICTTNEGVMYR
@ypriverol
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Name free text should UNIMOD accession.

@ypriverol
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Peptide probability or reliability score should be added in the full version.

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@ypriverol ypriverol

@edeutsch edeutsch

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