sushi-config.yaml

id: genomics-reporting
extension:
#  - url: http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status
#    valueCode: trial-use
#  - url: http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm
#    valueInteger: 2
  - url: http://hl7.org/fhir/StructureDefinition/structuredefinition-wg
    valueCode: cg
canonical: http://hl7.org/fhir/uv/genomics-reporting
packageId: hl7.fhir.uv.genomics-reporting
version: 3.0.1-SNAPSHOT
name: GenomicsReporting
title: Genomics Reporting Implementation Guide
status: active
publisher:
  name: HL7 International / Clinical Genomics
  url: http://www.hl7.org/Special/committees/clingenomics
  email: cg@lists.HL7.org
jurisdiction: http://unstats.un.org/unsd/methods/m49/m49.htm#001 "World"
description: Guidelines for reporting of clinical genomics results using HL7 FHIR.
license: CC0-1.0
fhirVersion: 4.0.1
parameters:
  apply-publisher: true
  apply-version: true
  shownav: 'true'
  special-url:
    - http://terminology.hl7.org/CodeSystem/sequence-phase-relationship-cs
    - http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs
copyrightYear: 2022+
releaseLabel: Ballot

pages:
  index.html:
    title: Home Page
  background.html:
    title: Genomic Background
  general.html:
    title: General Genomic Reporting
  sequencing.html:
    title: Variant Reporting
  pharmacogenomics.html:
    title: Pharmacogenomic Reporting
    generation: markdown
  somatics.html:
    title: Somatic Reporting
  histocompatibility.html:
    title: Histocompatibility and Immunogenetic Reporting
  operations.html:
    title: Genomic Operations
  downloads.html:
    title: Useful Downloads
  v2.html:
    title: "Appendix A: Relation to v2 reporting"
  cgapps.html:
    title: "Appendix B: Clinical Genomic Apps"
  domain.html:
    title: "Appendix C: HL7 Domain Analysis Model"
  usecases.html:
    title: "Appendix D: Query Guidance"
  codings.html:
    title: "Appendix E: External Coding Systems"
    generation: markdown
  conversion.html:
    title: "Appendix F: Conversion from FHIR Core STU3"
  molecularSequence.html:
    title: "Appendix G: Molecular Sequence"
  groupingGuidance.html:
    title: "Appendix H: Grouping Guidance"
  Glossary.html:
    title: "Appendix I: Glossary"
  changes.html:
    title: "Change Log"
    generation: markdown
#  artifacts.html:
#    title: Artifact List