You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, I tried both install methods and seem to be getting the same error. is the bwt file generated at an earlier step?
[TIMESTAMP] Wed Dec 13 13:48:53 UTC 2023 Mapping reads to 16S DB...
[Main] BALSA / soap4 v2.3.169 (build), Commit Hash: cf2df2b
Number of CPU threads: 24
[Main] Loading read files megapath.non_hg.pe_1.fq and megapath.non_hg.pe_2.fq
[Main] loading index into host...
BWTLoad() : cannot open bwtCodeFile!
Command exited with non-zero status 1
Command being timed: "/gpfs/fs7/grdi/genarcc/wp3/common/conda/envs/MegaPath/soap4/soap4 pair /gpfs/fs7/grdi/genarcc/wp3/common/conda/envs/megapath/db/ribo/SILVA.fasta.index megapath.non_hg.pe_1.fq megapath.non_hg.pe_2.fq -o megapath.dummy -C /gpfs/fs7/grdi/genarcc/wp3/common/conda/envs/MegaPath/soap4/soap4.ini -L 150 -T 24 -u 750 -F -P -nc -top 100"
User time (seconds): 0.00
System time (seconds): 0.00
Percent of CPU this job got: 12%
Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.01
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 4564
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 275
Voluntary context switches: 16
Involuntary context switches: 0
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 1
The text was updated successfully, but these errors were encountered:
Hi, I tried both install methods and seem to be getting the same error. is the bwt file generated at an earlier step?
[TIMESTAMP] Wed Dec 13 13:48:53 UTC 2023 Mapping reads to 16S DB...
[Main] BALSA / soap4 v2.3.169 (build), Commit Hash: cf2df2b
Number of CPU threads: 24
[Main] Loading read files megapath.non_hg.pe_1.fq and megapath.non_hg.pe_2.fq
[Main] loading index into host...
BWTLoad() : cannot open bwtCodeFile!
Command exited with non-zero status 1
Command being timed: "/gpfs/fs7/grdi/genarcc/wp3/common/conda/envs/MegaPath/soap4/soap4 pair /gpfs/fs7/grdi/genarcc/wp3/common/conda/envs/megapath/db/ribo/SILVA.fasta.index megapath.non_hg.pe_1.fq megapath.non_hg.pe_2.fq -o megapath.dummy -C /gpfs/fs7/grdi/genarcc/wp3/common/conda/envs/MegaPath/soap4/soap4.ini -L 150 -T 24 -u 750 -F -P -nc -top 100"
User time (seconds): 0.00
System time (seconds): 0.00
Percent of CPU this job got: 12%
Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.01
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 4564
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 275
Voluntary context switches: 16
Involuntary context switches: 0
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 1
The text was updated successfully, but these errors were encountered: