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BWTLoad() : cannot open bwtCodeFile! #3

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SandersonHaley opened this issue Dec 13, 2023 · 0 comments
Open

BWTLoad() : cannot open bwtCodeFile! #3

SandersonHaley opened this issue Dec 13, 2023 · 0 comments

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@SandersonHaley
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Hi, I tried both install methods and seem to be getting the same error. is the bwt file generated at an earlier step?

[TIMESTAMP] Wed Dec 13 13:48:53 UTC 2023 Mapping reads to 16S DB...

[Main] BALSA / soap4 v2.3.169 (build), Commit Hash: cf2df2b
Number of CPU threads: 24
[Main] Loading read files megapath.non_hg.pe_1.fq and megapath.non_hg.pe_2.fq
[Main] loading index into host...
BWTLoad() : cannot open bwtCodeFile!
Command exited with non-zero status 1
Command being timed: "/gpfs/fs7/grdi/genarcc/wp3/common/conda/envs/MegaPath/soap4/soap4 pair /gpfs/fs7/grdi/genarcc/wp3/common/conda/envs/megapath/db/ribo/SILVA.fasta.index megapath.non_hg.pe_1.fq megapath.non_hg.pe_2.fq -o megapath.dummy -C /gpfs/fs7/grdi/genarcc/wp3/common/conda/envs/MegaPath/soap4/soap4.ini -L 150 -T 24 -u 750 -F -P -nc -top 100"
User time (seconds): 0.00
System time (seconds): 0.00
Percent of CPU this job got: 12%
Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.01
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 4564
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 275
Voluntary context switches: 16
Involuntary context switches: 0
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 1

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