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having issues with bracken_to_phyloseq #5

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icbarron opened this issue Feb 8, 2024 · 0 comments
Open

having issues with bracken_to_phyloseq #5

icbarron opened this issue Feb 8, 2024 · 0 comments

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@icbarron
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icbarron commented Feb 8, 2024

Hi, I am trying to run:
cago_metadata <- read.csv(file = "sample_data.csv", sep = ";", header = T)

cago_metadata_dt <- as.data.table(cago_metadata)

ZR1 <- as.data.table("ZR-1.bracken")

ZR-1 <- bracken_to_phyloseq(ZR1, metadata = cago_metadata,id_col = "Name")

But I keep getting Error in value_vars(value.var, names(data)) : value.var values [reads] are not found in 'data'. as an error.

I'm attaching the two files here if you could help. Thank you!
issue data.zip

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