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Hi, I am trying to run: cago_metadata <- read.csv(file = "sample_data.csv", sep = ";", header = T)
cago_metadata <- read.csv(file = "sample_data.csv", sep = ";", header = T)
cago_metadata_dt <- as.data.table(cago_metadata)
ZR1 <- as.data.table("ZR-1.bracken")
ZR-1 <- bracken_to_phyloseq(ZR1, metadata = cago_metadata,id_col = "Name")
But I keep getting Error in value_vars(value.var, names(data)) : value.var values [reads] are not found in 'data'. as an error.
Error in value_vars(value.var, names(data)) : value.var values [reads] are not found in 'data'.
I'm attaching the two files here if you could help. Thank you! issue data.zip
The text was updated successfully, but these errors were encountered:
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Hi, I am trying to run:
cago_metadata <- read.csv(file = "sample_data.csv", sep = ";", header = T)
cago_metadata_dt <- as.data.table(cago_metadata)
ZR1 <- as.data.table("ZR-1.bracken")
ZR-1 <- bracken_to_phyloseq(ZR1, metadata = cago_metadata,id_col = "Name")
But I keep getting
Error in value_vars(value.var, names(data)) : value.var values [reads] are not found in 'data'.
as an error.I'm attaching the two files here if you could help. Thank you!
issue data.zip
The text was updated successfully, but these errors were encountered: