0.4.1

What's Changed

• fix: scope of resp if breakpoint does not occur on an exon by @jarbesfeld in #274
• docs: add badges by @jsstevenson in #275
• chore: update license by @jsstevenson in #276
• cicd: test in python 3.12 by @jsstevenson in #277
• build: update build metadata by @jsstevenson in #278
• cicd: add priority label check by @jsstevenson in #279
• docs: add badges to main readme by @jsstevenson in #280
• docs: fix residue mode illustration rendering by @jsstevenson in #281
• fix: don't use deprecated columns param by @jsstevenson in #291
• feat!: change default postgresql port to 5432 by @korikuzma in #292
• build: require >= python 3.10 by @jsstevenson in #295
• fix(docs): correct kwarg in docstring example by @korikuzma in #296
• feat!: acquire data with wags-tails, overhaul static file handling by @jsstevenson in #290
• build: pin polars 1.0 by @jsstevenson in #294
• chore: add issue templates by @jsstevenson in #298
• cicd: use builtin token by @jsstevenson in #299
• chore: add stalebot by @jsstevenson in #300
• style: update ruff configs by @jsstevenson in #302

Full Changelog: 0.4.0-dev3...0.4.1

0.4.0-dev3

What's Changed

• build: pin ruff to v0.2.0 by @korikuzma in #272
• feat: Determine adjacent exon for fusions with non-exonic breakpoint by @jarbesfeld in #268

New Contributors

• @jarbesfeld made their first contribution in #268

Full Changelog: 0.4.0-dev2...0.4.0-dev3

0.4.0-dev2

What's Changed

• fix: StrEnum to Enum for python < 3.11 by @korikuzma in #258
• docs: add generated changelog by @jsstevenson in #259
• style: add additional ruff checks by @jsstevenson in #260
• docs: fix readme links to docs by @jsstevenson in #262
• build: replace pyliftover with agct to improve performance by @korikuzma in #264
• fix: package version by @korikuzma in #265

Full Changelog: 0.4.0-dev1...0.4.0-dev2

0.4.0-dev1

What's Changed

• fix: include package data by @korikuzma in #257

Full Changelog: 0.4.0-dev0...0.4.0-dev1

0.4.0-dev0

What's Changed

• feat!: use latest UTA schema as default by @jsstevenson in #223
• feat!: include cdna and protein represenation when starting from genomic layer by @korikuzma in #228
• docs: add documentation by @jsstevenson in #222
• docs: add documentation links by @jsstevenson in #233
• build: remove pipenv support by @jsstevenson in #236
• build: use pyproject.toml for build config by @jsstevenson in #234
• test: make doctests work by @jsstevenson in #240
• fix!: return inter-residue positions instead of zero-based positions by @korikuzma in #235
• chore: rm pipfile lock references in .gitignore by @korikuzma in #238
• fix: polars InvalidOperationError by @korikuzma in #241
• style: use ruff for formatting by @jsstevenson in #242
• refactor: use enum for strand by @korikuzma in #244
• tests: resolve warnings by @korikuzma in #247
• refactor!: fix class naming by @korikuzma in #249
• refactor!: initial work for cleaning up ExonGenomicCoordsMapper by @korikuzma in #252
• chore: remove todo's in tests by @korikuzma in #251

Full Changelog: 0.3.0-dev1...0.4.0-dev0

0.1.14-dev3

• fix: return type for FeatureOverlap get_grch38_mane_gene_cds_overlap by @korikuzma in 67a241c

Full Changelog: 0.1.14-dev2...0.1.14-dev3

0.1.14-dev2

What's Changed

• feat: get cds overlap given chromosome, start, + stop by @korikuzma in #217

Full Changelog: v0.1.14-dev1...0.1.14-dev2

0.3.0-dev1

What's Changed

• build: properly pin pydantic v2 major version by @korikuzma in #215

Full Changelog: 0.3.0-dev0...0.3.0-dev1

0.3.0-dev0

What's Changed

• cicd: update release.yaml (publish python distribution to pypi) by @korikuzma in #197
• refactor!: rearrange app architecture by @korikuzma in #196
• refactor: use ResidueMode for residue_mode type by @korikuzma in #199
• style: use ruff + black by @korikuzma in #200
• refactor: use AnnotationLayer enum by @korikuzma in #203
• build: replace pandas with polars (#178) by @korikuzma in #205
• refactor!: Update TranscriptPriority enum by @korikuzma in #201
• feat: make positions optional in get_transcripts_from_gene by @katiestahl in #210
• refactor!: get_gene_mane_data sorted by desc MANE_Status by @korikuzma in #213
• build: pin pydantic to v2 major version by @korikuzma in #214
• feat!: create method for GRCh38 to MANE protein representation by @korikuzma in #211

New Contributors

• @katiestahl made their first contribution in #210

Full Changelog: 0.2.0-dev0...0.3.0-dev0

0.2.0-dev0

What's Changed

• build: update pydantic to v2 and remove GeneNormalizer class by @korikuzma in #189

Full Changelog: v0.1.14-dev1...0.2.0-dev0