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README.md

PyElastica Examples

This directory contains scripts for the cases presented in the paper. Each case are stored in separate subdirectories, containing case descriptions, run file, and all other data/script necessary to run.

Installing Requirements

In order to run examples, you will need to install additional dependencies.

pip install optional-requirements

Case Examples

Some examples provide additional files or links to published paper for a complete description. Examples can serve as a starting template for customized usages.

  • Figure2c
    • Purpose: Run scripts for Figure 2c in the main text.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 2 hours.
  • Figure2e
    • Purpose: Run scripts for Figure 2e in the main text.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 2 hours.
  • Figure3a
    • Purpose: Run scripts for Figure 3a in the main text.
    • Inject
      • Purpose: Run scripts to inject initial bend. First run these scripts then run Transport.
      • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 1 hour.
    • Transport
      • Purpose: Run scripts for Figure 3a in the main text.
      • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 1 hour.
  • Figure3b
    • Purpose: Run scripts for Figure 3b in the main text.
    • Inject
      • Purpose: Run scripts to inject initial bend. First run these scripts then run Transport.
      • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 1 hour.
    • Transport
      • Purpose: Run scripts for Figure 3b in the main text.
      • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 1 hour.
  • Figure3c
    • Purpose: Run scripts for Figure 3c in the main text.
    • Inject
      • Purpose: Run scripts to inject initial bend. First run these scripts then run Transport.
      • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 1 hour.
    • Transport
      • Purpose: Run scripts for Figure 3b in the main text.
      • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 1 hour.
  • Figure4a
    • Purpose: Run scripts for Figure 4a in the main text.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 1 hour 30 minutes.
  • Figure4e
    • Purpose: Run scripts for Figure 4e in the main text.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 1 hour 30 minutes.
  • Figure4f
    • Purpose: Run scripts for Figure 4f in the main text.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 2 hour and 30 minutes.
  • Figure4g
    • Purpose: Run scripts for Figure 4g in the main text.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 2 hour and 30 minutes.
  • Figure4i
    • Purpose: Run scripts for Figure 4i in the main text.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 3 hours.
  • SquidTentacle
    • Purpose: Run scripts for Squid Tentacle validation in the SI.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 3 minutes.
  • SIFigure9
    • Purpose: Run scripts for supplementary Figure 9.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 3 hours.
  • SIFigure10b
    • Purpose: Run scripts for supplementary Figure 10b.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 2 hour 30 minutes.
  • SIFigure11a
    • Purpose: Run scripts for supplementary Figure 11a.
    • Run Time: On a Macbook Pro 2021 M1 chip (8 core) 16Gb Ram, simulation takes 1 hour 30 minutes.