From 1b3be46e278d9077ce1365a5bca343fc110fb216 Mon Sep 17 00:00:00 2001
From: Frithjof Gressmann <fg14@illinois.edu>
Date: Wed, 18 Oct 2023 12:12:33 -0500
Subject: [PATCH] Add neuron wheel dependency to simplify installation

---
 poetry.lock    | 2686 ++++++++++--------------------------------------
 pyproject.toml |   15 +-
 2 files changed, 540 insertions(+), 2161 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 227e26d..058d718 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,34 +1,22 @@
 # This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand.
 
-[[package]]
-name = "alabaster"
-version = "0.7.13"
-description = "A configurable sidebar-enabled Sphinx theme"
-category = "main"
-optional = true
-python-versions = ">=3.6"
-files = [
-    {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"},
-    {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"},
-]
-
 [[package]]
 name = "annotated-types"
-version = "0.5.0"
+version = "0.6.0"
 description = "Reusable constraint types to use with typing.Annotated"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "annotated_types-0.5.0-py3-none-any.whl", hash = "sha256:58da39888f92c276ad970249761ebea80ba544b77acddaa1a4d6cf78287d45fd"},
-    {file = "annotated_types-0.5.0.tar.gz", hash = "sha256:47cdc3490d9ac1506ce92c7aaa76c579dc3509ff11e098fc867e5130ab7be802"},
+    {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
+    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
 ]
 
 [[package]]
 name = "appnope"
 version = "0.1.3"
 description = "Disable App Nap on macOS >= 10.9"
-category = "main"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -38,14 +26,14 @@ files = [
 
 [[package]]
 name = "astroid"
-version = "2.15.6"
+version = "2.15.8"
 description = "An abstract syntax tree for Python with inference support."
 category = "dev"
 optional = false
 python-versions = ">=3.7.2"
 files = [
-    {file = "astroid-2.15.6-py3-none-any.whl", hash = "sha256:389656ca57b6108f939cf5d2f9a2a825a3be50ba9d589670f393236e0a03b91c"},
-    {file = "astroid-2.15.6.tar.gz", hash = "sha256:903f024859b7c7687d7a7f3a3f73b17301f8e42dfd9cc9df9d4418172d3e2dbd"},
+    {file = "astroid-2.15.8-py3-none-any.whl", hash = "sha256:1aa149fc5c6589e3d0ece885b4491acd80af4f087baafa3fb5203b113e68cd3c"},
+    {file = "astroid-2.15.8.tar.gz", hash = "sha256:6c107453dffee9055899705de3c9ead36e74119cee151e5a9aaf7f0b0e020a6a"},
 ]
 
 [package.dependencies]
@@ -60,7 +48,7 @@ wrapt = [
 name = "asttokens"
 version = "2.4.0"
 description = "Annotate AST trees with source code positions"
-category = "main"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -74,42 +62,11 @@ six = ">=1.12.0"
 [package.extras]
 test = ["astroid", "pytest"]
 
-[[package]]
-name = "attrs"
-version = "23.1.0"
-description = "Classes Without Boilerplate"
-category = "main"
-optional = true
-python-versions = ">=3.7"
-files = [
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-    {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"},
-]
-
-[package.extras]
-cov = ["attrs[tests]", "coverage[toml] (>=5.3)"]
-dev = ["attrs[docs,tests]", "pre-commit"]
-docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
-tests = ["attrs[tests-no-zope]", "zope-interface"]
-tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
-
-[[package]]
-name = "babel"
-version = "2.12.1"
-description = "Internationalization utilities"
-category = "main"
-optional = true
-python-versions = ">=3.7"
-files = [
-    {file = "Babel-2.12.1-py3-none-any.whl", hash = "sha256:b4246fb7677d3b98f501a39d43396d3cafdc8eadb045f4a31be01863f655c610"},
-    {file = "Babel-2.12.1.tar.gz", hash = "sha256:cc2d99999cd01d44420ae725a21c9e3711b3aadc7976d6147f622d8581963455"},
-]
-
 [[package]]
 name = "backcall"
 version = "0.2.0"
 description = "Specifications for callback functions passed in to an API"
-category = "main"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -117,55 +74,32 @@ files = [
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 ]
 
-[[package]]
-name = "beautifulsoup4"
-version = "4.12.2"
-description = "Screen-scraping library"
-category = "main"
-optional = true
-python-versions = ">=3.6.0"
-files = [
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-]
-
-[package.dependencies]
-soupsieve = ">1.2"
-
-[package.extras]
-html5lib = ["html5lib"]
-lxml = ["lxml"]
-
 [[package]]
 name = "black"
-version = "23.9.1"
+version = "23.10.0"
 description = "The uncompromising code formatter."
 category = "dev"
 optional = false
 python-versions = ">=3.8"
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 [package.dependencies]
@@ -185,95 +119,6 @@ d = ["aiohttp (>=3.7.4)"]
 jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
 uvloop = ["uvloop (>=0.15.2)"]
 
-[[package]]
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-description = "Python package for providing Mozilla's CA Bundle."
-category = "main"
-optional = true
-python-versions = ">=3.6"
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-]
-
-[[package]]
-name = "cffi"
-version = "1.15.1"
-description = "Foreign Function Interface for Python calling C code."
-category = "main"
-optional = true
-python-versions = "*"
-files = [
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+[package.dependencies]
+numpy = {version = ">=1.16,<2.0", markers = "python_version <= \"3.11\""}
 
 [package.extras]
 bokeh = ["bokeh", "selenium"]
-docs = ["furo", "sphinx-copybutton"]
-mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.2.0)", "types-Pillow"]
+docs = ["furo", "sphinx (>=7.2)", "sphinx-copybutton"]
+mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.4.1)", "types-Pillow"]
 test = ["Pillow", "contourpy[test-no-images]", "matplotlib"]
 test-no-images = ["pytest", "pytest-cov", "wurlitzer"]
 
@@ -549,16 +298,20 @@ toml = ["tomli"]
 
 [[package]]
 name = "cycler"
-version = "0.11.0"
+version = "0.12.1"
 description = "Composable style cycles"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
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 ]
 
+[package.extras]
+docs = ["ipython", "matplotlib", "numpydoc", "sphinx"]
+tests = ["pytest", "pytest-cov", "pytest-xdist"]
+
 [[package]]
 name = "cython"
 version = "0.29.36"
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-
 [[package]]
 name = "decorator"
 version = "5.1.1"
 description = "Decorators for Humans"
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -677,23 +402,11 @@ files = [
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-description = "Docutils -- Python Documentation Utilities"
-category = "main"
-optional = true
-python-versions = ">=3.7"
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-
 [[package]]
 name = "exceptiongroup"
 version = "1.1.3"
 description = "Backport of PEP 654 (exception groups)"
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -706,33 +419,18 @@ test = ["pytest (>=6)"]
 
 [[package]]
 name = "executing"
-version = "1.2.0"
+version = "2.0.0"
 description = "Get the currently executing AST node of a frame, and other information"
-category = "main"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
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-
-[package.extras]
-tests = ["asttokens", "littleutils", "pytest", "rich"]
-
-[[package]]
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-version = "2.18.0"
-description = "Fastest Python implementation of JSON schema"
-category = "main"
-optional = true
-python-versions = "*"
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 ]
 
 [package.extras]
-devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"]
+tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipython", "littleutils", "pytest", "rich"]
 
 [[package]]
 name = "filelock"
@@ -753,46 +451,54 @@ typing = ["typing-extensions (>=4.7.1)"]
 
 [[package]]
 name = "fonttools"
-version = "4.42.1"
+version = "4.43.1"
 description = "Tools to manipulate font files"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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-
 [[package]]
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-version = "6.0.1"
+version = "6.1.0"
 description = "Read resources from Python packages"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff", "zipp (>=3.17)"]
 
 [[package]]
 name = "iniconfig"
@@ -1018,50 +610,16 @@ files = [
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-category = "main"
-optional = true
-python-versions = ">=3.8"
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-tornado = ">=6.1"
-traitlets = ">=5.4.0"
-
-[package.extras]
-cov = ["coverage[toml]", "curio", "matplotlib", "pytest-cov", "trio"]
-docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "trio"]
-pyqt5 = ["pyqt5"]
-pyside6 = ["pyside6"]
-test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio", "pytest-cov", "pytest-timeout"]
-
 [[package]]
 name = "ipython"
-version = "8.15.0"
+version = "8.16.1"
 description = "IPython: Productive Interactive Computing"
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=3.9"
 files = [
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 ]
 
 [package.dependencies]
@@ -1116,14 +674,14 @@ requirements-deprecated-finder = ["pip-api", "pipreqs"]
 
 [[package]]
 name = "jedi"
-version = "0.19.0"
+version = "0.19.1"
 description = "An autocompletion tool for Python that can be used for text editors."
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
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+    {file = "jedi-0.19.1-py2.py3-none-any.whl", hash = "sha256:e983c654fe5c02867aef4cdfce5a2fbb4a50adc0af145f70504238f18ef5e7e0"},
+    {file = "jedi-0.19.1.tar.gz", hash = "sha256:cf0496f3651bc65d7174ac1b7d043eff454892c708a87d1b683e57b569927ffd"},
 ]
 
 [package.dependencies]
@@ -1132,135 +690,7 @@ parso = ">=0.8.3,<0.9.0"
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-testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"]
-
-[[package]]
-name = "jinja2"
-version = "3.1.2"
-description = "A very fast and expressive template engine."
-category = "main"
-optional = true
-python-versions = ">=3.7"
-files = [
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-
-[package.dependencies]
-MarkupSafe = ">=2.0"
-
-[package.extras]
-i18n = ["Babel (>=2.7)"]
-
-[[package]]
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-python-versions = ">=3.8"
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-
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-test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
+testing = ["Django", "attrs", "colorama", "docopt", "pytest (<7.0.0)"]
 
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@@ -1422,101 +852,6 @@ files = [
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 version = "4.8.0"
 description = "Pexpect allows easy control of interactive console applications."
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 version = "0.7.5"
 description = "Tiny 'shelve'-like database with concurrency support"
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 [[package]]
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-version = "3.10.0"
+version = "3.11.0"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
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 python-versions = ">=3.7"
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 description = "Library for building powerful interactive command lines in Python"
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=3.7.0"
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 [package.dependencies]
 wcwidth = "*"
 
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 version = "0.7.0"
 description = "Run a subprocess in a pseudo terminal"
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+category = "dev"
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 python-versions = "*"
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 version = "0.2.2"
 description = "Safely evaluate AST nodes without side effects"
-category = "main"
+category = "dev"
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 python-versions = "*"
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 [package.dependencies]
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 typing-extensions = ">=4.6.1"
 
 [package.extras]
@@ -2250,153 +1419,128 @@ email = ["email-validator (>=2.0.0)"]
 
 [[package]]
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 ]
 
 [package.dependencies]
@@ -3060,25 +1882,26 @@ testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jar
 
 [[package]]
 name = "setuptools-scm"
-version = "7.1.0"
+version = "8.0.4"
 description = "the blessed package to manage your versions by scm tags"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 [package.dependencies]
-packaging = ">=20.0"
+packaging = ">=20"
 setuptools = "*"
-tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
+tomli = {version = ">=1", markers = "python_version < \"3.11\""}
 typing-extensions = "*"
 
 [package.extras]
-test = ["pytest (>=6.2)", "virtualenv (>20)"]
-toml = ["setuptools (>=42)"]
+docs = ["entangled-cli[rich]", "mkdocs", "mkdocs-entangled-plugin", "mkdocs-material", "mkdocstrings[python]", "pygments"]
+rich = ["rich"]
+test = ["build", "pytest", "rich", "wheel"]
 
 [[package]]
 name = "six"
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-greenlet = {version = "!=0.4.17", markers = "platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\""}
-typing-extensions = ">=4.2.0"
-
-[package.extras]
-aiomysql = ["aiomysql (>=0.2.0)", "greenlet (!=0.4.17)"]
-aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing-extensions (!=3.10.0.1)"]
-asyncio = ["greenlet (!=0.4.17)"]
-asyncmy = ["asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)", "greenlet (!=0.4.17)"]
-mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2,!=1.1.5)"]
-mssql = ["pyodbc"]
-mssql-pymssql = ["pymssql"]
-mssql-pyodbc = ["pyodbc"]
-mypy = ["mypy (>=0.910)"]
-mysql = ["mysqlclient (>=1.4.0)"]
-mysql-connector = ["mysql-connector-python"]
-oracle = ["cx-oracle (>=7)"]
-oracle-oracledb = ["oracledb (>=1.0.1)"]
-postgresql = ["psycopg2 (>=2.7)"]
-postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"]
-postgresql-pg8000 = ["pg8000 (>=1.29.1)"]
-postgresql-psycopg = ["psycopg (>=3.0.7)"]
-postgresql-psycopg2binary = ["psycopg2-binary"]
-postgresql-psycopg2cffi = ["psycopg2cffi"]
-postgresql-psycopgbinary = ["psycopg[binary] (>=3.0.7)"]
-pymysql = ["pymysql"]
-sqlcipher = ["sqlcipher3-binary"]
-
 [[package]]
 name = "stack-data"
-version = "0.6.2"
+version = "0.6.3"
 description = "Extract data from python stack frames and tracebacks for informative displays"
-category = "main"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
-    {file = "stack_data-0.6.2-py3-none-any.whl", hash = "sha256:cbb2a53eb64e5785878201a97ed7c7b94883f48b87bfb0bbe8b623c74679e4a8"},
-    {file = "stack_data-0.6.2.tar.gz", hash = "sha256:32d2dd0376772d01b6cb9fc996f3c8b57a357089dec328ed4b6553d037eaf815"},
+    {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"},
+    {file = "stack_data-0.6.3.tar.gz", hash = "sha256:836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9"},
 ]
 
 [package.dependencies]
@@ -3450,18 +1935,6 @@ pure-eval = "*"
 [package.extras]
 tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
 
-[[package]]
-name = "style"
-version = "1.1.0"
-description = "🌈 Terminal string styling"
-category = "main"
-optional = true
-python-versions = "*"
-files = [
-    {file = "style-1.1.0-py2.py3-none-any.whl", hash = "sha256:6485a4bcb84629341a5fd1587fe3ac4887daa4741f0c8a1d01b9c3c8a263afe7"},
-    {file = "style-1.1.0.tar.gz", hash = "sha256:8eb365fc15039b19b728bd4e6e85fb7daf24e7aeeec6a15a666f97484c564005"},
-]
-
 [[package]]
 name = "sympy"
 version = "1.12"
@@ -3477,21 +1950,6 @@ files = [
 [package.dependencies]
 mpmath = ">=0.19"
 
-[[package]]
-name = "tabulate"
-version = "0.9.0"
-description = "Pretty-print tabular data"
-category = "main"
-optional = true
-python-versions = ">=3.7"
-files = [
-    {file = "tabulate-0.9.0-py3-none-any.whl", hash = "sha256:024ca478df22e9340661486f85298cff5f6dcdba14f3813e8830015b9ed1948f"},
-    {file = "tabulate-0.9.0.tar.gz", hash = "sha256:0095b12bf5966de529c0feb1fa08671671b3368eec77d7ef7ab114be2c068b3c"},
-]
-
-[package.extras]
-widechars = ["wcwidth"]
-
 [[package]]
 name = "tokenize-rt"
 version = "4.2.1"
@@ -3528,37 +1986,16 @@ files = [
     {file = "tomlkit-0.12.1.tar.gz", hash = "sha256:38e1ff8edb991273ec9f6181244a6a391ac30e9f5098e7535640ea6be97a7c86"},
 ]
 
-[[package]]
-name = "tornado"
-version = "6.3.3"
-description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
-category = "main"
-optional = true
-python-versions = ">= 3.8"
-files = [
-    {file = "tornado-6.3.3-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:502fba735c84450974fec147340016ad928d29f1e91f49be168c0a4c18181e1d"},
-    {file = "tornado-6.3.3-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:805d507b1f588320c26f7f097108eb4023bbaa984d63176d1652e184ba24270a"},
-    {file = "tornado-6.3.3-cp38-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:1bd19ca6c16882e4d37368e0152f99c099bad93e0950ce55e71daed74045908f"},
-    {file = "tornado-6.3.3-cp38-abi3-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:7ac51f42808cca9b3613f51ffe2a965c8525cb1b00b7b2d56828b8045354f76a"},
-    {file = "tornado-6.3.3-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:71a8db65160a3c55d61839b7302a9a400074c9c753040455494e2af74e2501f2"},
-    {file = "tornado-6.3.3-cp38-abi3-musllinux_1_1_aarch64.whl", hash = "sha256:ceb917a50cd35882b57600709dd5421a418c29ddc852da8bcdab1f0db33406b0"},
-    {file = "tornado-6.3.3-cp38-abi3-musllinux_1_1_i686.whl", hash = "sha256:7d01abc57ea0dbb51ddfed477dfe22719d376119844e33c661d873bf9c0e4a16"},
-    {file = "tornado-6.3.3-cp38-abi3-musllinux_1_1_x86_64.whl", hash = "sha256:9dc4444c0defcd3929d5c1eb5706cbe1b116e762ff3e0deca8b715d14bf6ec17"},
-    {file = "tornado-6.3.3-cp38-abi3-win32.whl", hash = "sha256:65ceca9500383fbdf33a98c0087cb975b2ef3bfb874cb35b8de8740cf7f41bd3"},
-    {file = "tornado-6.3.3-cp38-abi3-win_amd64.whl", hash = "sha256:22d3c2fa10b5793da13c807e6fc38ff49a4f6e1e3868b0a6f4164768bb8e20f5"},
-    {file = "tornado-6.3.3.tar.gz", hash = "sha256:e7d8db41c0181c80d76c982aacc442c0783a2c54d6400fe028954201a2e032fe"},
-]
-
 [[package]]
 name = "traitlets"
-version = "5.10.0"
+version = "5.11.2"
 description = "Traitlets Python configuration system"
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "traitlets-5.10.0-py3-none-any.whl", hash = "sha256:417745a96681fbb358e723d5346a547521f36e9bd0d50ba7ab368fff5d67aa54"},
-    {file = "traitlets-5.10.0.tar.gz", hash = "sha256:f584ea209240466e66e91f3c81aa7d004ba4cf794990b0c775938a1544217cd1"},
+    {file = "traitlets-5.11.2-py3-none-any.whl", hash = "sha256:98277f247f18b2c5cabaf4af369187754f4fb0e85911d473f72329db8a7f4fae"},
+    {file = "traitlets-5.11.2.tar.gz", hash = "sha256:7564b5bf8d38c40fa45498072bf4dc5e8346eb087bbf1e2ae2d8774f6a0f078e"},
 ]
 
 [package.extras]
@@ -3567,48 +2004,16 @@ test = ["argcomplete (>=3.0.3)", "mypy (>=1.5.1)", "pre-commit", "pytest (>=7.0,
 
 [[package]]
 name = "typing-extensions"
-version = "4.7.1"
-description = "Backported and Experimental Type Hints for Python 3.7+"
+version = "4.8.0"
+description = "Backported and Experimental Type Hints for Python 3.8+"
 category = "main"
 optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"},
-    {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"},
-]
-
-[[package]]
-name = "update"
-version = "0.0.1"
-description = ""
-category = "main"
-optional = true
-python-versions = "*"
-files = [
-    {file = "update-0.0.1-py2.py3-none-any.whl", hash = "sha256:a25522b4bf60e3e3c1a3ff3ca3a4f5a328ac4b8ff400fdc9614483147e313323"},
-]
-
-[package.dependencies]
-style = "1.1.0"
-
-[[package]]
-name = "urllib3"
-version = "2.0.4"
-description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "main"
-optional = true
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "urllib3-2.0.4-py3-none-any.whl", hash = "sha256:de7df1803967d2c2a98e4b11bb7d6bd9210474c46e8a0401514e3a42a75ebde4"},
-    {file = "urllib3-2.0.4.tar.gz", hash = "sha256:8d22f86aae8ef5e410d4f539fde9ce6b2113a001bb4d189e0aed70642d602b11"},
+    {file = "typing_extensions-4.8.0-py3-none-any.whl", hash = "sha256:8f92fc8806f9a6b641eaa5318da32b44d401efaac0f6678c9bc448ba3605faa0"},
+    {file = "typing_extensions-4.8.0.tar.gz", hash = "sha256:df8e4339e9cb77357558cbdbceca33c303714cf861d1eef15e1070055ae8b7ef"},
 ]
 
-[package.extras]
-brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
-secure = ["certifi", "cryptography (>=1.9)", "idna (>=2.0.0)", "pyopenssl (>=17.1.0)", "urllib3-secure-extra"]
-socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
-zstd = ["zstandard (>=0.18.0)"]
-
 [[package]]
 name = "virtualenv"
 version = "20.24.5"
@@ -3632,31 +2037,16 @@ test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess
 
 [[package]]
 name = "wcwidth"
-version = "0.2.6"
+version = "0.2.8"
 description = "Measures the displayed width of unicode strings in a terminal"
-category = "main"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
-    {file = "wcwidth-0.2.6-py2.py3-none-any.whl", hash = "sha256:795b138f6875577cd91bba52baf9e445cd5118fd32723b460e30a0af30ea230e"},
-    {file = "wcwidth-0.2.6.tar.gz", hash = "sha256:a5220780a404dbe3353789870978e472cfe477761f06ee55077256e509b156d0"},
+    {file = "wcwidth-0.2.8-py2.py3-none-any.whl", hash = "sha256:77f719e01648ed600dfa5402c347481c0992263b81a027344f3e1ba25493a704"},
+    {file = "wcwidth-0.2.8.tar.gz", hash = "sha256:8705c569999ffbb4f6a87c6d1b80f324bd6db952f5eb0b95bc07517f4c1813d4"},
 ]
 
-[[package]]
-name = "wheel"
-version = "0.41.2"
-description = "A built-package format for Python"
-category = "main"
-optional = true
-python-versions = ">=3.7"
-files = [
-    {file = "wheel-0.41.2-py3-none-any.whl", hash = "sha256:75909db2664838d015e3d9139004ee16711748a52c8f336b52882266540215d8"},
-    {file = "wheel-0.41.2.tar.gz", hash = "sha256:0c5ac5ff2afb79ac23ab82bab027a0be7b5dbcf2e54dc50efe4bf507de1f7985"},
-]
-
-[package.extras]
-test = ["pytest (>=6.0.0)", "setuptools (>=65)"]
-
 [[package]]
 name = "wrapt"
 version = "1.15.0"
@@ -3744,24 +2134,24 @@ files = [
 
 [[package]]
 name = "zipp"
-version = "3.16.2"
+version = "3.17.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
-    {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"},
+    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
+    {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
 testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [extras]
-docs = ["myst-nb", "myst-parser", "numpydoc", "pydata-sphinx-theme", "readthedocs-sphinx-search", "sphinx", "sphinx-autodoc-typehints", "sphinx-click", "sphinx-copybutton", "sphinx-togglebutton", "sphinxcontrib-mermaid"]
+docs = []
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.12"
-content-hash = "07ff413fc0c9ae1a254d76146641409328bd7007aaeeb59e0d05805ed416e004"
+content-hash = "85fa0d0bf576f6f6316cba9ddeda6b68ff28dfbcb63a5005975c44f14d12aaf3"
diff --git a/pyproject.toml b/pyproject.toml
index 6df2e27..d19b71b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -14,7 +14,7 @@ packages = [
 python = ">=3.9,<3.12"
 numpy = "^1.22.4"
 scipy = "^1.8.1"
-mpi4py = "^3.1.3"
+mpi4py = "^3.1.5"
 h5py = "^3.7.0"
 Cython = "^0.29.30"
 PyYAML = "^6.0"
@@ -26,19 +26,8 @@ neuroh5 = {git = "https://github.com/iraikov/neuroh5.git"}
 future = "^0.18.3"
 matplotlib = "^3.6.0"
 quantities = "^0.13.0"
-sphinx = {version = "<6", optional = true}
-pydata-sphinx-theme = {version = "^0.12.0", optional = true}
-readthedocs-sphinx-search = {version = "^0.2.0", optional = true}
-sphinx-autodoc-typehints = {version = "^1.21.8", optional = true}
-numpydoc = {version = "^1.5.0", optional = true}
-sphinx-togglebutton = {version = "^0.3.2", optional = true}
-sphinx-copybutton = {version = "^0.5.1", optional = true}
-sphinx-click = {version = "^4.4.0", optional = true}
-sphinxcontrib-mermaid = {version = "^0.7.1", optional = true}
-update = {version = "^0.0.1", optional = true}
-myst-nb = {version = "^0.17.1", optional = true}
-myst-parser = {version = "^0.18.1", optional = true}
 pydantic = "^2.3.0"
+neuron = "^8.2.3"
 
 
 [tool.poetry.dev-dependencies]