From 76a3e1ba3f7f9f7b95e6e0e41e25a75087d8eab3 Mon Sep 17 00:00:00 2001 From: skylerlewis Date: Thu, 7 Nov 2024 08:58:30 -0800 Subject: [PATCH] rebuild docs and site --- _pkgdown.yml | 9 +- docs/pkgdown.yml | 2 +- docs/reference/flowline_attr.html | 324 +++++++++--------- docs/reference/flowline_geom.html | 4 +- docs/reference/flowline_geom_proj.html | 4 +- docs/reference/flowline_spawning_attr.html | 12 +- docs/reference/habitat_drc.html | 147 ++++++++ docs/reference/habitat_drc_weighted.html | 157 +++++++++ docs/reference/habitat_fsa.html | 144 ++++++++ docs/reference/habitat_fsa_duration.html | 170 +++++++++ .../reference/habitat_fsa_duration_reach.html | 157 +++++++++ docs/reference/habitat_fsa_reach.html | 133 +++++++ docs/reference/habitat_fsa_reach_scaled.html | 142 ++++++++ docs/reference/habitat_predict.html | 199 +++++++++++ docs/reference/index.html | 34 +- docs/reference/oom_range.html | 5 +- docs/reference/seq_log10.html | 7 +- docs/reference/wua_hydraulic.html | 20 +- docs/reference/wua_hydraulic_interp.html | 20 +- docs/reference/wua_predicted.html | 22 +- .../reference/wua_predicted_cv_mainstems.html | 20 +- .../wua_predicted_cv_watersheds.html | 20 +- docs/sitemap.xml | 8 + man/habitat_fsa_duration.Rd | 1 + man/habitat_predict.Rd | 1 + 25 files changed, 1528 insertions(+), 234 deletions(-) create mode 100644 docs/reference/habitat_drc.html create mode 100644 docs/reference/habitat_drc_weighted.html create mode 100644 docs/reference/habitat_fsa.html create mode 100644 docs/reference/habitat_fsa_duration.html create mode 100644 docs/reference/habitat_fsa_duration_reach.html create mode 100644 docs/reference/habitat_fsa_reach.html create mode 100644 docs/reference/habitat_fsa_reach_scaled.html create mode 100644 docs/reference/habitat_predict.html diff --git a/_pkgdown.yml b/_pkgdown.yml index db959f3..929ec7c 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -28,7 +28,14 @@ reference: - title: "Suitable Habitat Functions" desc: "Main functions for accessing habitat suitability estimates (model outputs) for a particular reach/mainstem/watershed" contents: - - starts_with("habitat_") + - habitat_predict + - habitat_fsa + - habitat_fsa_reach + - habitat_fsa_reach_scaled + - habitat_drc + - habitat_drc_weighted + - habitat_fsa_duration + - habitat_fsa_duration_reach - title: "Datasets" desc: "Packaged datasets including geometries, attributes, and habitat suitability estimates (model outputs) for all reaches/mainstems/watersheds" contents: diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 70a1eb0..84865e2 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -9,4 +9,4 @@ articles: spawning_extents: spawning_extents.html statistical_model: statistical_model.html watershed_aggregation: watershed_aggregation.html -last_built: 2024-11-07T16:07Z +last_built: 2024-11-07T16:46Z diff --git a/docs/reference/flowline_attr.html b/docs/reference/flowline_attr.html index 0719cc2..b1ce321 100644 --- a/docs/reference/flowline_attr.html +++ b/docs/reference/flowline_attr.html @@ -88,168 +88,168 @@

Examples

flowline_attr |> pillar::glimpse()
 #> Rows: 178,868
 #> Columns: 162
-#> $ comid                        <dbl> 20245062, 24085230, 22226684, 22226720, 2…
-#> $ reachcode                    <fct> 16060014044574, 17120005008721, 180101010…
-#> $ gnis_id                      <chr> NA, NA, "253899", "253899", "253899", "25…
-#> $ gnis_name                    <chr> NA, NA, "Smith River", "Smith River", "Sm…
-#> $ lengthkm                     <dbl> 5.415, 2.787, 0.598, 2.855, 0.807, 5.394,…
-#> $ ftype                        <fct> StreamRiver, StreamRiver, StreamRiver, St…
-#> $ fcode                        <fct> 46003, 46003, 46006, 46006, 46006, 46006,…
-#> $ rc_huc_8                     <chr> "16060014", "17120005", "18010101", "1801…
-#> $ rc_huc_10                    <chr> "1606001404", "1712000500", "1801010100",…
-#> $ rc_huc_12                    <chr> "160600140445", "171200050087", "18010101…
-#> $ ftype_desc                   <chr> "Stream/River", "Stream/River", "Stream/R…
-#> $ artificial_path              <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ ply_comid                    <int> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ ply_gnis_id                  <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ ply_gnis_name                <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ huc_8                        <chr> NA, NA, "18010101", "18010101", "18010101…
-#> $ huc_10                       <chr> NA, NA, "1801010104", "1801010104", "1801…
-#> $ hu_10_name                   <chr> NA, NA, "Smith River", "Smith River", "Sm…
-#> $ huc_12                       <chr> NA, NA, "180101010404", "180101010404", "…
-#> $ hu_12_type                   <chr> NA, NA, "M", "M", "M", "M", "M", "M", "S"…
-#> $ hu_12_name                   <chr> NA, NA, "Smith River", "Smith River", "Sm…
-#> $ hu_12_ds                     <chr> NA, NA, "180101010502", "180101010502", "…
-#> $ hydro_seq                    <dbl> NA, NA, 10013332, 10013490, 10013972, 100…
-#> $ reach_code                   <fct> NA, NA, 18010101000020, 18010101000021, 1…
-#> $ stream_level                 <dbl> NA, NA, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, …
-#> $ stream_order                 <dbl> NA, NA, 5, 5, 5, 5, 5, 5, 4, 4, 4, 4, 4, …
-#> $ us_length_km                 <dbl> NA, NA, 1325.477, 1316.741, 1310.090, 130…
-#> $ ds_length_km                 <dbl> NA, NA, 0.000, 0.598, 4.892, 5.699, 11.09…
-#> $ da_area_sq_km                <dbl> NA, NA, 1755.1854, 1746.2691, 1738.4283, …
-#> $ da_area_sq_km_div            <dbl> NA, NA, 1755.1854, 1746.2691, 1738.4283, …
-#> $ da_area_sq_km_tot            <dbl> NA, NA, 1755.1854, 1746.2691, 1738.4283, …
-#> $ divergence_ratio             <dbl> NA, NA, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, …
-#> $ reach_length_km              <dbl> NA, NA, 0.598, 2.855, 0.807, 5.394, 4.668…
-#> $ reach_length_ft              <dbl> NA, NA, 1961.94226, 9366.79790, 2647.6378…
-#> $ slope                        <dbl> NA, NA, 0.00065217, 0.00069001, 0.0000371…
-#> $ elev_min                     <dbl> NA, NA, 3.05, 3.44, 8.69, 8.72, 13.13, 22…
-#> $ elev_max                     <dbl> NA, NA, 3.44, 5.41, 8.72, 13.13, 22.00, 2…
-#> $ stream_power                 <dbl> NA, NA, 1.144679262, 1.204943142, 0.06461…
-#> $ da_ppt_mean_mm               <dbl> NA, NA, 2723.898, 2727.656, 2731.168, 273…
-#> $ loc_ppt_mean_mm              <dbl> NA, NA, 1821.85, 1910.73, 1939.38, 2097.0…
-#> $ vogel_q_ma_cfs               <dbl> NA, NA, 6178.05072, 6165.75802, 6155.6592…
-#> $ vogel_v_ma_fps               <dbl> NA, NA, 1.81167, 1.82382, 1.26003, 1.8621…
-#> $ erom_q_ma_cfs                <dbl> NA, NA, 4127.598, 4111.549, 4097.949, 407…
-#> $ erom_v_ma_fps                <dbl> NA, NA, NA, NA, 1.22917, 1.81155, 2.02242…
-#> $ sinuosity                    <dbl> 1.07, 1.69, 1.04, 1.10, 1.11, 1.13, 1.26,…
-#> $ da_avg_slope                 <dbl> NA, NA, 42.38, 42.51, 42.65, 42.75, 42.99…
-#> $ da_elev_mean                 <dbl> NA, NA, 717.08, 720.02, 722.78, 725.09, 7…
-#> $ da_elev_min                  <dbl> NA, NA, 3.05, 3.30, 5.54, 5.54, 12.59, 19…
-#> $ da_elev_max                  <dbl> NA, NA, 1927.99, 1927.99, 1927.99, 1927.9…
-#> $ da_elev_rel                  <dbl> NA, NA, 1924.94, 1924.69, 1922.45, 1922.4…
-#> $ loc_bfi                      <dbl> NA, NA, 46.0000, 45.9753, 45.0000, 44.708…
-#> $ da_bfi                       <dbl> NA, NA, 46.1662, 46.1671, 46.1697, 46.167…
-#> $ loc_twi                      <dbl> NA, NA, 986.5119, 910.0642, 690.3582, 704…
-#> $ da_twi                       <dbl> NA, NA, 602.5557, 601.6043, 600.5490, 600…
-#> $ loc_pct_clay                 <dbl> NA, NA, 23.5595, 25.7558, 33.3100, 31.265…
-#> $ da_pct_clay                  <dbl> NA, NA, 26.7798, 26.7672, 26.7629, 26.727…
-#> $ loc_pct_sand                 <dbl> NA, NA, 29.0960, 25.0422, 14.7206, 18.269…
-#> $ da_pct_sand                  <dbl> NA, NA, 29.0673, 29.1089, 29.1428, 29.219…
-#> $ loc_permeability             <dbl> NA, NA, 10.9010, 7.9839, 1.9500, 3.0299, …
-#> $ loc_bedrock_depth            <dbl> NA, NA, 148.5053, 137.5721, 110.2300, 120…
-#> $ da_permeability              <dbl> NA, NA, 3.1762, 3.1594, 3.1475, 3.1542, 3…
-#> $ da_bedrock_depth             <dbl> NA, NA, 102.8035, 102.6739, 102.5554, 102…
-#> $ loc_k_erodibility            <dbl> NA, NA, 0.3163, 0.3113, 0.3094, 0.3201, 0…
-#> $ da_k_erodibility             <dbl> NA, NA, 0.3540, 0.3542, 0.3544, 0.3547, 0…
-#> $ loc_precip                   <dbl> NA, NA, 1793.005, 1863.625, 1877.664, 201…
-#> $ da_precip                    <dbl> NA, NA, 2696.198, 2700.126, 2703.767, 270…
-#> $ loc_runoff                   <dbl> NA, NA, 2150, 2150, 2150, 2150, 2150, 215…
-#> $ da_runoff                    <dbl> NA, NA, 2142.698, 2142.661, 2142.628, 214…
-#> $ bf_width_m                   <dbl> NA, NA, 54.37433, 54.26395, 58.87000, 58.…
-#> $ bf_depth_m                   <dbl> NA, NA, 2.068039, 2.064945, 2.790000, 2.3…
-#> $ bf_w_d_ratio                 <dbl> NA, NA, 26.29270, 26.27864, 21.10036, 25.…
-#> $ mean_ndvi                    <dbl> NA, NA, 0.6854199, 0.7078681, 0.6419506, …
-#> $ bio_aq_rank_sw               <int> NA, NA, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, …
-#> $ species                      <dbl> NA, NA, 281, 281, 281, 281, 281, 281, 139…
-#> $ species_fish                 <dbl> NA, NA, 16, 16, 16, 16, 16, 16, 11, 11, 1…
-#> $ species_crust                <dbl> NA, NA, 3, 3, 3, 3, 3, 3, 0, 0, 0, 0, 0, …
-#> $ species_herps                <dbl> NA, NA, 16, 16, 16, 16, 16, 16, 14, 14, 1…
-#> $ species_inverts              <dbl> NA, NA, 136, 136, 136, 136, 136, 136, 70,…
-#> $ species_mollusks             <dbl> NA, NA, 6, 6, 6, 6, 6, 6, 2, 2, 2, 2, 2, …
-#> $ species_plants               <dbl> NA, NA, 37, 37, 37, 37, 37, 37, 24, 24, 2…
-#> $ species_birds                <dbl> NA, NA, 62, 62, 62, 62, 62, 62, 13, 13, 1…
-#> $ species_mammals              <dbl> NA, NA, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, …
-#> $ species_mollusks_crust       <dbl> NA, NA, 9, 9, 9, 9, 9, 9, 2, 2, 2, 2, 2, …
-#> $ species_endemic              <dbl> NA, NA, 32, 32, 32, 32, 32, 32, 16, 16, 1…
-#> $ species_endemic_fish         <dbl> NA, NA, 3, 3, 3, 3, 3, 3, 1, 1, 1, 1, 1, …
-#> $ species_endemic_crust        <dbl> NA, NA, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, …
-#> $ species_endemic_herps        <dbl> NA, NA, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, …
-#> $ species_endemic_inverts      <dbl> NA, NA, 26, 26, 26, 26, 26, 26, 13, 13, 1…
-#> $ species_endemic_mollusks     <dbl> NA, NA, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
-#> $ species_endemic_plants       <dbl> NA, NA, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
-#> $ species_endemic_birds        <dbl> NA, NA, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
-#> $ species_endemic_mammals      <dbl> NA, NA, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
-#> $ species_vulnerable           <dbl> NA, NA, 66, 66, 66, 66, 66, 66, 36, 36, 3…
-#> $ species_listed               <dbl> NA, NA, 6, 6, 6, 6, 6, 6, 2, 2, 2, 2, 2, …
-#> $ species_endemic_vulnerable   <dbl> NA, NA, 11, 11, 11, 11, 11, 11, 4, 4, 4, …
-#> $ species_endemic_listed       <dbl> NA, NA, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, …
-#> $ genus                        <dbl> NA, NA, 224, 224, 224, 224, 224, 224, 120…
-#> $ family                       <dbl> NA, NA, 111, 111, 111, 111, 111, 111, 76,…
-#> $ tax_order                    <dbl> NA, NA, 56, 56, 56, 56, 56, 56, 39, 39, 3…
-#> $ tax_class                    <dbl> NA, NA, 15, 15, 15, 15, 15, 15, 13, 13, 1…
-#> $ phylum                       <dbl> NA, NA, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, …
-#> $ species_current              <dbl> NA, NA, 227, 227, 227, 227, 227, 227, 110…
-#> $ species_historical           <dbl> NA, NA, 64, 64, 64, 64, 64, 64, 30, 30, 3…
-#> $ species_other                <dbl> NA, NA, 36, 36, 36, 36, 36, 36, 29, 29, 2…
-#> $ hyd_cat                      <fct> NA, NA, Rain, Rain, Rain, Rain, Rain, Rai…
-#> $ hyd_cls                      <fct> NA, NA, "Winter storms", "Winter storms",…
-#> $ nf_bfl_dry_cfs_dry           <dbl> NA, NA, 350.00, 348.00, 347.00, 344.00, 3…
-#> $ nf_bfl_dry_cfs               <dbl> NA, NA, 357.00, 355.00, 353.00, 351.00, 3…
-#> $ nf_bfl_wet_cfs               <dbl> NA, NA, 1790.0, 1780.0, 1770.0, 1760.0, 1…
-#> $ nf_wet_start                 <dbl> NA, NA, 37.0, 37.0, 37.0, 37.0, 37.0, 38.…
-#> $ nf_wet_dur                   <dbl> NA, NA, 167, 167, 167, 166, 166, 166, 172…
-#> $ peak_q2_cfs                  <dbl> NA, NA, 60800, 60500, 60200, 59900, 59100…
-#> $ peak_q5_cfs                  <dbl> NA, NA, 84300, 83900, 83500, 83000, 82000…
-#> $ peak_q10_cfs                 <dbl> NA, NA, 120000, 119000, 119000, 118000, 1…
-#> $ merit_width_m                <dbl> NA, NA, NA, 70.40650, 33.88020, 53.46577,…
-#> $ vb_width_transect            <dbl> NA, NA, 54.37433, 70.40650, 33.88020, 53.…
-#> $ frac_leveed_longitudinal     <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,…
-#> $ lateral_levee_confinement_ft <dbl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ geomorph_class               <fct> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ geomorph_confined            <fct> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ geomorph_uniform             <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ geomorph_steppool            <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ geomorph_riffles             <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ geomorph_gravel              <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ geomorph_spawning            <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ hqt_gradient_class           <fct> Bedrock, Bedrock, Bedrock, Bedrock, Bedro…
-#> $ range_FR_Extant              <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_FR_Historical          <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_LFR_Extant             <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_LFR_Historical         <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_SR_Extant              <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_SR_Historical          <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_SR_Observed            <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_WR_Extant              <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_WR_Historical          <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_WR_Observed            <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_cvchinook_historical   <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ range_cvchinook_extant       <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,…
-#> $ river_group                  <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ river_cvpia                  <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ habitat                      <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ level                        <dbl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ watershed_cvpia_parent       <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ watershed_cvpia              <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ watershed_level_1            <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ watershed_level_2            <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ watershed_level_3            <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ range_pisces                 <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ bf_xarea_m                   <dbl> NA, NA, 112.44826, 112.05209, 164.24730, …
-#> $ chan_width_m                 <dbl> NA, NA, 54.37433, 70.40650, 33.88020, 53.…
-#> $ velocity_m_s                 <dbl> NA, NA, NA, NA, 4.032710, 5.943406, 6.635…
-#> $ wetted_perimeter_m           <dbl> NA, NA, 58.51041, 58.39384, 64.45000, 63.…
-#> $ hydraulic_radius_m           <dbl> NA, NA, 1.9218504, 1.9189024, 2.5484453, …
-#> $ critical_shields_number      <dbl> NA, NA, 0.02397074, 0.02431113, 0.0117122…
-#> $ grain_size_mobilized_mm      <dbl> NA, NA, 0.31689472, 0.33008001, 0.0490167…
-#> $ shear_velocity_cm_s          <dbl> NA, NA, 11.088549, 11.396950, 3.048375, 1…
-#> $ settling_velocity_ndim       <dbl> NA, NA, 8.423085e+01, 9.145616e+01, 1.750…
-#> $ grain_size_suspended_ndim    <dbl> NA, NA, 700.88109, 730.32344, 101.02642, …
-#> $ grain_size_suspended_mm      <dbl> NA, NA, 0.059693451, 0.062201032, 0.00860…
-#> $ mtpi30_min                   <dbl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, N…
-#> $ vb_bf_w_ratio                <dbl> NA, NA, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, …
-#> $ da_scalar_maf                <dbl> NA, NA, 3.87597636, 3.86160608, 3.8492175…
+#> $ comid                        <dbl> 20245062, 24085230, 22226684, 22226720, 22226732, 22226762, 22226782, 22226810, 22226834, 22226848, 22226864, 22226866, 22226870…
+#> $ reachcode                    <fct> 16060014044574, 17120005008721, 18010101000020, 18010101000021, 18010101000023, 18010101000024, 18010101000025, 18010101000026, …
+#> $ gnis_id                      <chr> NA, NA, "253899", "253899", "253899", "253899", "253899", "253899", "263616", "263616", "263616", "263616", "263616", "263616", …
+#> $ gnis_name                    <chr> NA, NA, "Smith River", "Smith River", "Smith River", "Smith River", "Smith River", "Smith River", "Mill Creek", "Mill Creek", "M…
+#> $ lengthkm                     <dbl> 5.415, 2.787, 0.598, 2.855, 0.807, 5.394, 4.668, 2.622, 3.486, 1.599, 1.215, 0.292, 0.422, 2.608, 1.053, 0.656, 1.795, 0.811, 3.…
+#> $ ftype                        <fct> StreamRiver, StreamRiver, StreamRiver, StreamRiver, StreamRiver, StreamRiver, StreamRiver, StreamRiver, StreamRiver, StreamRiver…
+#> $ fcode                        <fct> 46003, 46003, 46006, 46006, 46006, 46006, 46006, 46006, 46006, 46006, 46006, 46006, 46006, 46006, 46006, 46006, 46006, 46006, 46…
+#> $ rc_huc_8                     <chr> "16060014", "17120005", "18010101", "18010101", "18010101", "18010101", "18010101", "18010101", "18010101", "18010101", "1801010…
+#> $ rc_huc_10                    <chr> "1606001404", "1712000500", "1801010100", "1801010100", "1801010100", "1801010100", "1801010100", "1801010100", "1801010100", "1…
+#> $ rc_huc_12                    <chr> "160600140445", "171200050087", "180101010000", "180101010000", "180101010000", "180101010000", "180101010000", "180101010000", …
+#> $ ftype_desc                   <chr> "Stream/River", "Stream/River", "Stream/River", "Stream/River", "Stream/River", "Stream/River", "Stream/River", "Stream/River", …
+#> $ artificial_path              <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ ply_comid                    <int> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ ply_gnis_id                  <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ ply_gnis_name                <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ huc_8                        <chr> NA, NA, "18010101", "18010101", "18010101", "18010101", "18010101", "18010101", "18010101", "18010101", "18010101", "18010101", …
+#> $ huc_10                       <chr> NA, NA, "1801010104", "1801010104", "1801010104", "1801010104", "1801010104", "1801010104", "1801010104", "1801010104", "1801010…
+#> $ hu_10_name                   <chr> NA, NA, "Smith River", "Smith River", "Smith River", "Smith River", "Smith River", "Smith River", "Smith River", "Smith River", …
+#> $ huc_12                       <chr> NA, NA, "180101010404", "180101010404", "180101010404", "180101010404", "180101010404", "180101010404", "180101010402", "1801010…
+#> $ hu_12_type                   <chr> NA, NA, "M", "M", "M", "M", "M", "M", "S", "S", "S", "S", "S", "S", "S", "M", "M", "M", "S", "S", "S", "S", "S", "S", "S", "S", …
+#> $ hu_12_name                   <chr> NA, NA, "Smith River", "Smith River", "Smith River", "Smith River", "Smith River", "Smith River", "Mill Creek", "Mill Creek", "M…
+#> $ hu_12_ds                     <chr> NA, NA, "180101010502", "180101010502", "180101010502", "180101010502", "180101010502", "180101010502", "180101010404", "1801010…
+#> $ hydro_seq                    <dbl> NA, NA, 10013332, 10013490, 10013972, 10014142, 10014325, 10014511, 10030080, 10031409, 10032891, 10034617, 10036591, 10038903, …
+#> $ reach_code                   <fct> NA, NA, 18010101000020, 18010101000021, 18010101000023, 18010101000024, 18010101000025, 18010101000026, 18010101000027, 18010101…
+#> $ stream_level                 <dbl> NA, NA, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 3, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 2, …
+#> $ stream_order                 <dbl> NA, NA, 5, 5, 5, 5, 5, 5, 4, 4, 4, 4, 4, 4, 3, 5, 5, 5, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 3, 3, 3, 3, 3, 2, 1, 4, …
+#> $ us_length_km                 <dbl> NA, NA, 1325.477, 1316.741, 1310.090, 1304.299, 1292.314, 1283.472, 84.641, 79.109, 75.340, 72.107, 69.757, 63.655, 23.106, 1196…
+#> $ ds_length_km                 <dbl> NA, NA, 0.000, 0.598, 4.892, 5.699, 11.093, 15.761, 18.383, 21.869, 23.468, 24.683, 24.975, 25.397, 28.005, 18.383, 19.039, 20.8…
+#> $ da_area_sq_km                <dbl> NA, NA, 1755.1854, 1746.2691, 1738.4283, 1728.0855, 1705.6791, 1689.4917, 95.7528, 89.2260, 84.4875, 81.1359, 79.6392, 74.9817, …
+#> $ da_area_sq_km_div            <dbl> NA, NA, 1755.1854, 1746.2691, 1738.4283, 1728.0855, 1705.6791, 1689.4917, 95.7528, 89.2260, 84.4875, 81.1359, 79.6392, 74.9817, …
+#> $ da_area_sq_km_tot            <dbl> NA, NA, 1755.1854, 1746.2691, 1738.4283, 1728.0855, 1705.6791, 1689.4917, 95.7528, 89.2260, 84.4875, 81.1359, 79.6392, 74.9817, …
+#> $ divergence_ratio             <dbl> NA, NA, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, …
+#> $ reach_length_km              <dbl> NA, NA, 0.598, 2.855, 0.807, 5.394, 4.668, 2.622, 3.486, 1.599, 1.215, 0.292, 0.422, 2.608, 1.053, 0.656, 1.795, 0.811, 3.351, 2…
+#> $ reach_length_ft              <dbl> NA, NA, 1961.94226, 9366.79790, 2647.63780, 17696.85039, 15314.96063, 8602.36220, 11437.00787, 5246.06299, 3986.22047, 958.00525…
+#> $ slope                        <dbl> NA, NA, 0.00065217, 0.00069001, 0.00003717, 0.00081757, 0.00190017, 0.00133485, 0.00570281, 0.00213258, 0.00795884, 0.00339041, …
+#> $ elev_min                     <dbl> NA, NA, 3.05, 3.44, 8.69, 8.72, 13.13, 22.00, 25.50, 45.38, 48.79, 58.46, 59.45, 63.61, 68.73, 25.50, 27.20, 46.08, 46.08, 65.32…
+#> $ elev_max                     <dbl> NA, NA, 3.44, 5.41, 8.72, 13.13, 22.00, 25.50, 45.38, 48.79, 58.46, 59.45, 63.61, 68.73, 73.33, 27.20, 46.08, 46.08, 65.32, 73.2…
+#> $ stream_power                 <dbl> NA, NA, 1.144679262, 1.204943142, 0.064617380, 1.412830862, 3.241080255, 2.255217996, 0.546060025, 0.190281583, 0.672422495, 0.2…
+#> $ da_ppt_mean_mm               <dbl> NA, NA, 2723.898, 2727.656, 2731.168, 2733.134, 2740.761, 2746.749, 2351.744, 2364.892, 2381.114, 2388.872, 2391.910, 2408.075, …
+#> $ loc_ppt_mean_mm              <dbl> NA, NA, 1821.85, 1910.73, 1939.38, 2097.04, 2040.72, 2119.72, 2146.45, 2115.43, 2108.63, 2130.96, 2130.50, 2168.98, 2165.49, 212…
+#> $ vogel_q_ma_cfs               <dbl> NA, NA, 6178.05072, 6165.75802, 6155.65922, 6130.26554, 6090.33734, 6063.74845, 259.42945, 245.27943, 236.04806, 228.56757, 225.…
+#> $ vogel_v_ma_fps               <dbl> NA, NA, 1.81167, 1.82382, 1.26003, 1.86210, 2.08068, 1.98094, 1.37341, 1.20561, 1.40226, 1.25526, 1.42591, 1.16226, 1.08374, 2.1…
+#> $ erom_q_ma_cfs                <dbl> NA, NA, 4127.598, 4111.549, 4097.949, 4074.883, 4031.351, 3999.819, 142.626, 133.011, 126.478, 121.548, 119.334, 112.727, 37.446…
+#> $ erom_v_ma_fps                <dbl> NA, NA, NA, NA, 1.22917, 1.81155, 2.02242, 1.92551, 1.32303, 1.16222, 1.34835, 1.20805, 1.36991, 1.11861, 1.03836, 2.08110, 2.53…
+#> $ sinuosity                    <dbl> 1.07, 1.69, 1.04, 1.10, 1.11, 1.13, 1.26, 1.30, 1.32, 1.55, 1.22, 1.03, 1.09, 1.24, 1.18, 1.13, 1.05, 1.01, 1.27, 1.19, 1.38, 1.…
+#> $ da_avg_slope                 <dbl> NA, NA, 42.38, 42.51, 42.65, 42.75, 42.99, 43.23, 30.59, 30.93, 31.80, 32.15, 32.25, 32.79, 32.82, 44.03, 44.11, 44.20, 45.91, 4…
+#> $ da_elev_mean                 <dbl> NA, NA, 717.08, 720.02, 722.78, 725.09, 732.31, 737.95, 279.17, 288.51, 298.19, 303.52, 305.74, 312.87, 277.57, 766.96, 768.83, …
+#> $ da_elev_min                  <dbl> NA, NA, 3.05, 3.30, 5.54, 5.54, 12.59, 19.71, 25.50, 43.88, 48.50, 58.40, 58.75, 59.76, 68.72, 25.33, 26.60, 30.63, 34.05, 58.63…
+#> $ da_elev_max                  <dbl> NA, NA, 1927.99, 1927.99, 1927.99, 1927.99, 1927.99, 1927.99, 715.50, 715.50, 715.50, 715.50, 715.50, 715.50, 660.08, 1927.99, 1…
+#> $ da_elev_rel                  <dbl> NA, NA, 1924.94, 1924.69, 1922.45, 1922.45, 1915.40, 1908.28, 690.00, 671.62, 667.00, 657.10, 656.75, 655.74, 591.36, 1902.66, 1…
+#> $ loc_bfi                      <dbl> NA, NA, 46.0000, 45.9753, 45.0000, 44.7088, 44.0000, 44.0000, 44.0000, 44.0000, 44.0000, 44.0000, 44.0000, 44.0000, 44.0196, 44.…
+#> $ da_bfi                       <dbl> NA, NA, 46.1662, 46.1671, 46.1697, 46.1678, 46.1893, 46.2102, 44.5755, 44.6176, 44.6522, 44.6792, 44.6919, 44.7349, 44.8440, 46.…
+#> $ loc_twi                      <dbl> NA, NA, 986.5119, 910.0642, 690.3582, 704.8816, 747.9005, 710.4250, 666.2432, 733.8008, 711.1087, 780.2000, 743.9758, 685.5036, …
+#> $ da_twi                       <dbl> NA, NA, 602.5557, 601.6043, 600.5490, 600.2391, 599.0380, 597.8346, 628.3256, 626.3497, 621.5346, 619.4696, 619.0707, 617.7287, …
+#> $ loc_pct_clay                 <dbl> NA, NA, 23.5595, 25.7558, 33.3100, 31.2657, 29.2201, 32.8140, 34.7125, 34.7300, 34.7300, 34.7300, 34.7300, 34.7300, 34.7300, 30.…
+#> $ da_pct_clay                  <dbl> NA, NA, 26.7798, 26.7672, 26.7629, 26.7276, 26.6721, 26.6498, 34.4717, 34.4538, 34.4383, 34.4262, 34.4205, 34.4013, 34.7300, 26.…
+#> $ loc_pct_sand                 <dbl> NA, NA, 29.0960, 25.0422, 14.7206, 18.2691, 22.7085, 21.7815, 19.1185, 19.0000, 19.0000, 19.0000, 19.0000, 19.0000, 19.0000, 24.…
+#> $ da_pct_sand                  <dbl> NA, NA, 29.0673, 29.1089, 29.1428, 29.2196, 29.3523, 29.4076, 19.3687, 19.3890, 19.4108, 19.4278, 19.4358, 19.4629, 19.0000, 30.…
+#> $ loc_permeability             <dbl> NA, NA, 10.9010, 7.9839, 1.9500, 3.0299, 4.0528, 2.0863, 1.9413, 1.9400, 1.9400, 1.9400, 1.9400, 1.9400, 1.9400, 2.2500, 2.2485,…
+#> $ loc_bedrock_depth            <dbl> NA, NA, 148.5053, 137.5721, 110.2300, 120.1530, 136.7819, 115.8794, 139.0963, 139.3100, 139.3100, 139.3100, 139.3100, 139.3100, …
+#> $ da_permeability              <dbl> NA, NA, 3.1762, 3.1594, 3.1475, 3.1542, 3.1563, 3.1507, 1.9592, 1.9605, 1.9617, 1.9626, 1.9630, 1.9644, 1.9400, 3.2248, 3.2290, …
+#> $ da_bedrock_depth             <dbl> NA, NA, 102.8035, 102.6739, 102.5554, 102.5356, 102.3613, 102.1049, 136.7739, 136.6005, 136.4485, 136.3303, 136.2743, 136.0857, …
+#> $ loc_k_erodibility            <dbl> NA, NA, 0.3163, 0.3113, 0.3094, 0.3201, 0.3540, 0.3794, 0.3900, 0.3900, 0.3900, 0.3900, 0.3900, 0.3900, 0.3900, 0.3875, 0.3809, …
+#> $ da_k_erodibility             <dbl> NA, NA, 0.3540, 0.3542, 0.3544, 0.3547, 0.3552, 0.3551, 0.3895, 0.3894, 0.3894, 0.3894, 0.3894, 0.3893, 0.3900, 0.3530, 0.3529, …
+#> $ loc_precip                   <dbl> NA, NA, 1793.005, 1863.625, 1877.664, 2014.618, 1949.340, 2003.199, 2016.543, 1998.174, 1996.843, 2018.341, 2010.967, 2039.757, …
+#> $ da_precip                    <dbl> NA, NA, 2696.198, 2700.126, 2703.767, 2706.316, 2714.807, 2721.530, 2226.069, 2239.800, 2254.915, 2262.858, 2266.169, 2282.424, …
+#> $ loc_runoff                   <dbl> NA, NA, 2150.000, 2150.000, 2150.000, 2150.000, 2150.000, 2150.000, 2150.000, 2150.000, 2150.000, 2150.000, 2150.000, 2150.000, …
+#> $ da_runoff                    <dbl> NA, NA, 2142.698, 2142.661, 2142.628, 2142.583, 2142.486, 2142.414, 2150.000, 2150.000, 2150.000, 2150.000, 2150.000, 2150.000, …
+#> $ bf_width_m                   <dbl> NA, NA, 54.37433, 54.26395, 58.87000, 58.50000, 59.02000, 58.82000, 19.73000, 19.66000, 18.76000, 19.20000, 18.62000, 19.04000, …
+#> $ bf_depth_m                   <dbl> NA, NA, 2.068039, 2.064945, 2.790000, 2.300000, 2.300000, 2.290000, 1.470000, 1.490000, 1.400000, 1.440000, 1.400000, 1.470000, …
+#> $ bf_w_d_ratio                 <dbl> NA, NA, 26.292698, 26.278642, 21.100358, 25.434783, 25.660870, 25.685590, 13.421769, 13.194631, 13.400000, 13.333333, 13.300000,…
+#> $ mean_ndvi                    <dbl> NA, NA, 0.6854199, 0.7078681, 0.6419506, 0.7930269, 0.7990128, 0.7999287, 0.8299923, 0.8251462, 0.8445378, 0.8372284, 0.8452153,…
+#> $ bio_aq_rank_sw               <int> NA, NA, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, …
+#> $ species                      <dbl> NA, NA, 281, 281, 281, 281, 281, 281, 139, 139, 139, 139, 139, 139, 139, 281, 281, 281, 66, 66, 66, 66, 66, 66, 66, 66, 66, 66, …
+#> $ species_fish                 <dbl> NA, NA, 16, 16, 16, 16, 16, 16, 11, 11, 11, 11, 11, 11, 11, 16, 16, 16, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, …
+#> $ species_crust                <dbl> NA, NA, 3, 3, 3, 3, 3, 3, 0, 0, 0, 0, 0, 0, 0, 3, 3, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
+#> $ species_herps                <dbl> NA, NA, 16, 16, 16, 16, 16, 16, 14, 14, 14, 14, 14, 14, 14, 16, 16, 16, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, …
+#> $ species_inverts              <dbl> NA, NA, 136, 136, 136, 136, 136, 136, 70, 70, 70, 70, 70, 70, 70, 136, 136, 136, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,…
+#> $ species_mollusks             <dbl> NA, NA, 6, 6, 6, 6, 6, 6, 2, 2, 2, 2, 2, 2, 2, 6, 6, 6, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, …
+#> $ species_plants               <dbl> NA, NA, 37, 37, 37, 37, 37, 37, 24, 24, 24, 24, 24, 24, 24, 37, 37, 37, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, …
+#> $ species_birds                <dbl> NA, NA, 62, 62, 62, 62, 62, 62, 13, 13, 13, 13, 13, 13, 13, 62, 62, 62, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 1, 1, 1,…
+#> $ species_mammals              <dbl> NA, NA, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, …
+#> $ species_mollusks_crust       <dbl> NA, NA, 9, 9, 9, 9, 9, 9, 2, 2, 2, 2, 2, 2, 2, 9, 9, 9, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, …
+#> $ species_endemic              <dbl> NA, NA, 32, 32, 32, 32, 32, 32, 16, 16, 16, 16, 16, 16, 16, 32, 32, 32, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 1, 1, 1,…
+#> $ species_endemic_fish         <dbl> NA, NA, 3, 3, 3, 3, 3, 3, 1, 1, 1, 1, 1, 1, 1, 3, 3, 3, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 2, …
+#> $ species_endemic_crust        <dbl> NA, NA, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
+#> $ species_endemic_herps        <dbl> NA, NA, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
+#> $ species_endemic_inverts      <dbl> NA, NA, 26, 26, 26, 26, 26, 26, 13, 13, 13, 13, 13, 13, 13, 26, 26, 26, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,…
+#> $ species_endemic_mollusks     <dbl> NA, NA, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
+#> $ species_endemic_plants       <dbl> NA, NA, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 2, …
+#> $ species_endemic_birds        <dbl> NA, NA, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
+#> $ species_endemic_mammals      <dbl> NA, NA, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
+#> $ species_vulnerable           <dbl> NA, NA, 66, 66, 66, 66, 66, 66, 36, 36, 36, 36, 36, 36, 36, 66, 66, 66, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, 25, …
+#> $ species_listed               <dbl> NA, NA, 6, 6, 6, 6, 6, 6, 2, 2, 2, 2, 2, 2, 2, 6, 6, 6, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, …
+#> $ species_endemic_vulnerable   <dbl> NA, NA, 11, 11, 11, 11, 11, 11, 4, 4, 4, 4, 4, 4, 4, 11, 11, 11, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, …
+#> $ species_endemic_listed       <dbl> NA, NA, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, …
+#> $ genus                        <dbl> NA, NA, 224, 224, 224, 224, 224, 224, 120, 120, 120, 120, 120, 120, 120, 224, 224, 224, 54, 54, 54, 54, 54, 54, 54, 54, 54, 54, …
+#> $ family                       <dbl> NA, NA, 111, 111, 111, 111, 111, 111, 76, 76, 76, 76, 76, 76, 76, 111, 111, 111, 44, 44, 44, 44, 44, 44, 44, 44, 44, 44, 44, 44,…
+#> $ tax_order                    <dbl> NA, NA, 56, 56, 56, 56, 56, 56, 39, 39, 39, 39, 39, 39, 39, 56, 56, 56, 33, 33, 33, 33, 33, 33, 33, 33, 33, 33, 33, 33, 33, 33, …
+#> $ tax_class                    <dbl> NA, NA, 15, 15, 15, 15, 15, 15, 13, 13, 13, 13, 13, 13, 13, 15, 15, 15, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, …
+#> $ phylum                       <dbl> NA, NA, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 3, 3, 3, 3, 3, 3, 3, 4, …
+#> $ species_current              <dbl> NA, NA, 227, 227, 227, 227, 227, 227, 110, 110, 110, 110, 110, 110, 110, 227, 227, 227, 22, 22, 22, 22, 22, 22, 22, 22, 22, 22, …
+#> $ species_historical           <dbl> NA, NA, 64, 64, 64, 64, 64, 64, 30, 30, 30, 30, 30, 30, 30, 64, 64, 64, 39, 39, 39, 39, 39, 39, 39, 39, 39, 39, 39, 39, 39, 39, …
+#> $ species_other                <dbl> NA, NA, 36, 36, 36, 36, 36, 36, 29, 29, 29, 29, 29, 29, 29, 36, 36, 36, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, …
+#> $ hyd_cat                      <fct> NA, NA, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, Rain, …
+#> $ hyd_cls                      <fct> NA, NA, "Winter storms", "Winter storms", "Winter storms", "Winter storms", "Winter storms", "Winter storms", "Winter storms", "…
+#> $ nf_bfl_dry_cfs_dry           <dbl> NA, NA, 350.00, 348.00, 347.00, 344.00, 340.00, 337.00, 8.73, 8.21, 7.77, 7.51, 7.37, 6.94, 2.41, 317.00, 316.00, 315.00, 151.00…
+#> $ nf_bfl_dry_cfs               <dbl> NA, NA, 357.00, 355.00, 353.00, 351.00, 347.00, 344.00, 11.70, 11.10, 10.60, 10.10, 9.96, 9.39, 3.12, 323.00, 322.00, 321.00, 15…
+#> $ nf_bfl_wet_cfs               <dbl> NA, NA, 1790.0, 1780.0, 1770.0, 1760.0, 1750.0, 1730.0, 64.2, 60.2, 57.6, 55.6, 54.7, 52.2, 19.4, 1640.0, 1630.0, 1630.0, 785.0,…
+#> $ nf_wet_start                 <dbl> NA, NA, 37.0, 37.0, 37.0, 37.0, 37.0, 38.0, 40.3, 40.0, 40.0, 39.9, 39.8, 39.8, 42.8, 38.0, 38.0, 38.0, 37.0, 37.0, 37.0, 37.0, …
+#> $ nf_wet_dur                   <dbl> NA, NA, 167, 167, 167, 166, 166, 166, 172, 171, 171, 171, 171, 171, 171, 166, 166, 166, 167, 167, 167, 167, 167, NA, 166, 166, 1…
+#> $ peak_q2_cfs                  <dbl> NA, NA, 60800, 60500, 60200, 59900, 59100, 58500, 2780, 2590, 2450, 2360, 2310, 2180, 837, 55100, 54900, 54700, 26900, 25100, 24…
+#> $ peak_q5_cfs                  <dbl> NA, NA, 84300, 83900, 83500, 83000, 82000, 81200, 4110, 3830, 3620, 3480, 3410, 3210, 1240, 76400, 76200, 75800, 30400, 28400, 2…
+#> $ peak_q10_cfs                 <dbl> NA, NA, 120000, 119000, 119000, 118000, 116000, 115000, 4460, 4150, 4110, 3950, 3860, 3890, 1760, 108000, 108000, 108000, 39300,…
+#> $ merit_width_m                <dbl> NA, NA, NA, 70.40650, 33.88020, 53.46577, 41.81242, 44.81628, 44.10711, NA, NA, NA, NA, NA, NA, 22.23854, 37.86823, 43.62812, 22…
+#> $ vb_width_transect            <dbl> NA, NA, 54.37433, 70.40650, 33.88020, 53.46577, 41.81242, 44.81628, 44.10711, 19.66000, 18.76000, 19.20000, 18.62000, 19.04000, …
+#> $ frac_leveed_longitudinal     <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,…
+#> $ lateral_levee_confinement_ft <dbl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ geomorph_class               <fct> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ geomorph_confined            <fct> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ geomorph_uniform             <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ geomorph_steppool            <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ geomorph_riffles             <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ geomorph_gravel              <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ geomorph_spawning            <lgl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ hqt_gradient_class           <fct> Bedrock, Bedrock, Bedrock, Bedrock, Bedrock, Bedrock, Bedrock, Bedrock, Bedrock, Bedrock, Bedrock, Bedrock, Bedrock, Bedrock, Be…
+#> $ range_FR_Extant              <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_FR_Historical          <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_LFR_Extant             <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_LFR_Historical         <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_SR_Extant              <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_SR_Historical          <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_SR_Observed            <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_WR_Extant              <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_WR_Historical          <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_WR_Observed            <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_cvchinook_historical   <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ range_cvchinook_extant       <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FA…
+#> $ river_group                  <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ river_cvpia                  <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ habitat                      <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ level                        <dbl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ watershed_cvpia_parent       <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ watershed_cvpia              <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ watershed_level_1            <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ watershed_level_2            <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ watershed_level_3            <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ range_pisces                 <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ bf_xarea_m                   <dbl> NA, NA, 112.44826, 112.05209, 164.24730, 134.55000, 135.74600, 134.69780, 29.00310, 29.29340, 26.26400, 27.64800, 26.06800, 27.9…
+#> $ chan_width_m                 <dbl> NA, NA, 54.37433, 70.40650, 33.88020, 53.46577, 41.81242, 44.81628, 44.10711, 19.66000, 18.76000, 19.20000, 18.62000, 19.04000, …
+#> $ velocity_m_s                 <dbl> NA, NA, NA, NA, 4.032710, 5.943406, 6.635236, 6.317290, 4.340650, 3.813058, 4.423720, 3.963419, 4.494455, 3.669980, 3.406693, 6.…
+#> $ wetted_perimeter_m           <dbl> NA, NA, 58.51041, 58.39384, 64.45000, 63.10000, 63.62000, 63.40000, 22.67000, 22.64000, 21.56000, 22.08000, 21.42000, 21.98000, …
+#> $ hydraulic_radius_m           <dbl> NA, NA, 1.9218504, 1.9189024, 2.5484453, 2.1323296, 2.1337001, 2.1245710, 1.2793604, 1.2938781, 1.2181818, 1.2521739, 1.2169935,…
+#> $ critical_shields_number      <dbl> NA, NA, 0.02397074, 0.02431113, 0.01171222, 0.02536428, 0.03131766, 0.02867143, 0.04122052, 0.03223425, 0.04480265, 0.03619548, …
+#> $ grain_size_mobilized_mm      <dbl> NA, NA, 0.31689472, 0.33008001, 0.04901675, 0.41655548, 0.78460761, 0.59947405, 1.07271505, 0.51879664, 1.31151795, 0.71085106, …
+#> $ shear_velocity_cm_s          <dbl> NA, NA, 11.088549, 11.396950, 3.048375, 13.077483, 19.943318, 16.679628, 26.753180, 16.452574, 30.840077, 20.407647, 34.305902, …
+#> $ settling_velocity_ndim       <dbl> NA, NA, 8.423085e+01, 9.145616e+01, 1.750058e+00, 1.381718e+02, 4.900488e+02, 2.866858e+02, 1.182969e+03, 2.751367e+02, 1.812147…
+#> $ grain_size_suspended_ndim    <dbl> NA, NA, 700.88109, 730.32344, 101.02642, 897.67371, 1690.55153, 1293.03958, 2626.60876, 1266.72708, 3250.91379, 1749.93409, 3814…
+#> $ grain_size_suspended_mm      <dbl> NA, NA, 0.059693451, 0.062201032, 0.008604335, 0.076454113, 0.143982849, 0.110127092, 0.223706055, 0.107886078, 0.276877588, 0.1…
+#> $ mtpi30_min                   <dbl> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, …
+#> $ vb_bf_w_ratio                <dbl> NA, NA, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, …
+#> $ da_scalar_maf                <dbl> NA, NA, 3.87597636, 3.86160608, 3.84921757, 3.82907072, 3.78997005, 3.76220325, 0.18256134, 0.17106844, 0.16309473, 0.15713507, …
diff --git a/docs/reference/flowline_geom.html b/docs/reference/flowline_geom.html index ac42609..4c39abc 100644 --- a/docs/reference/flowline_geom.html +++ b/docs/reference/flowline_geom.html @@ -88,8 +88,8 @@

Examples

flowline_geom |> pillar::glimpse()
 #> Rows: 178,868
 #> Columns: 2
-#> $ comid    <int> 20245062, 24085230, 22226684, 22226720, 22226732, 22226762, 2…
-#> $ geometry <LINESTRING [°]> LINESTRING (-115.9712 36.53..., LINESTRING (-121.1…
+#> $ comid    <int> 20245062, 24085230, 22226684, 22226720, 22226732, 22226762, 22226782, 22226810, 22226834, 22226848, 22226864, 22226866, 22226870, 22227042, 22226892…
+#> $ geometry <LINESTRING [°]> LINESTRING (-115.9712 36.53..., LINESTRING (-121.1573 42.88..., LINESTRING (-124.1578 41.90..., LINESTRING (-124.1454 41.88..., LINESTRIN…
diff --git a/docs/reference/flowline_geom_proj.html b/docs/reference/flowline_geom_proj.html index bf33404..f4e7fb9 100644 --- a/docs/reference/flowline_geom_proj.html +++ b/docs/reference/flowline_geom_proj.html @@ -88,8 +88,8 @@

Examples

flowline_geom_proj |> pillar::glimpse()
 #> Rows: 178,868
 #> Columns: 2
-#> $ comid    <int> 20245062, 24085230, 22226684, 22226720, 22226732, 22226762, 2…
-#> $ geometry <LINESTRING [m]> LINESTRING (-1758581 168425..., LINESTRING (-20195…
+#> $ comid    <int> 20245062, 24085230, 22226684, 22226720, 22226732, 22226762, 22226782, 22226810, 22226834, 22226848, 22226864, 22226866, 22226870, 22227042, 22226892…
+#> $ geometry <LINESTRING [m]> LINESTRING (-1758581 168425..., LINESTRING (-2019509 247915..., LINESTRING (-2285804 244137..., LINESTRING (-2285521 243881..., LINESTRIN…
diff --git a/docs/reference/flowline_spawning_attr.html b/docs/reference/flowline_spawning_attr.html index 9c6e4c4..40a47e4 100644 --- a/docs/reference/flowline_spawning_attr.html +++ b/docs/reference/flowline_spawning_attr.html @@ -88,12 +88,12 @@

Examples

flowline_spawning_attr |> pillar::glimpse()
 #> Rows: 178,868
 #> Columns: 6
-#> $ comid                         <dbl> 20245062, 24085230, 22226684, 22226720, …
-#> $ spawning_geographic_context   <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE…
-#> $ spawning_gravel_via_sediment  <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, TRUE,…
-#> $ spawning_gravel_via_geomorph  <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE…
-#> $ spawning_gravel_either_method <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, TRUE,…
-#> $ spawning_filter_all           <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE…
+#> $ comid                         <dbl> 20245062, 24085230, 22226684, 22226720, 22226732, 22226762, 22226782, 22226810, 22226834, 22226848, 22226864, 22226866, 2222687…
+#> $ spawning_geographic_context   <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, F…
+#> $ spawning_gravel_via_sediment  <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, FALSE, TRUE, TRUE, …
+#> $ spawning_gravel_via_geomorph  <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, F…
+#> $ spawning_gravel_either_method <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, FALSE, TRUE, TRUE, …
+#> $ spawning_filter_all           <lgl> FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, F…
diff --git a/docs/reference/habitat_drc.html b/docs/reference/habitat_drc.html new file mode 100644 index 0000000..d030710 --- /dev/null +++ b/docs/reference/habitat_drc.html @@ -0,0 +1,147 @@ + +Create Duration Suitability Rating Curve for a streamgage — habitat_drc • habistat + + +
+
+ + + +
+
+
+

Create Duration Suitability Rating Curve for a streamgage

+ + +
+ +
+

Create Duration Suitability Rating Curve for a streamgage

+
+ +
+ 
habitat_drc(
+  streamgage,
+  habitat_type = "rearing",
+  run = "fall",
+  wy_group = "Dry",
+  gradient = "Valley Foothill"
+)
+
+ +
+

Arguments

+ + +
streamgage
+

Three-letter CDEC identifier for the streamgage

+ + +
habitat_type
+

Either "rearing" (default) or "spawning"

+ + +
run
+

One of "fall" (default), "late fall", "winter", "spring", or "steelhead"

+ + +
wy_group
+

Either "Dry" or "Wet" for water year type scenario

+ + +
gradient
+

For rearing, either "Valley Foothill" (default) or "Valley Lowland"

+ +
+
+

Value

+

A tibble with columns for flow (flow_cfs) and duration habitat suitability index (durhsi)

+
+ +
+

Examples

+ 

+habitat_drc("FSB", habitat_type="rearing", gradient = "Valley Foothill")
+#> Error in data.matrix(data): 'list' object cannot be coerced to type 'double'
+
+
+
+
+ +
+ + +
+ + + + + + + + diff --git a/docs/reference/habitat_drc_weighted.html b/docs/reference/habitat_drc_weighted.html new file mode 100644 index 0000000..ea92db9 --- /dev/null +++ b/docs/reference/habitat_drc_weighted.html @@ -0,0 +1,157 @@ + +Create Duration Suitability Rating Curve for a streamgage (scaled to prediction point by drainage area and precipitation) — habitat_drc_weighted • habistat + + +
+
+ + + +
+
+
+

Create Duration Suitability Rating Curve for a streamgage (scaled to prediction point by drainage area and precipitation)

+ + +
+ +
+

Create Duration Suitability Rating Curve for a streamgage (scaled to prediction point by drainage area and precipitation)

+
+ +
+ 
habitat_drc_weighted(
+  streamgage,
+  reach,
+  scale = "durhsi",
+  habitat_type = "rearing",
+  run = "fall",
+  wy_group = "Dry",
+  gradient = "Valley Foothill"
+)
+
+ +
+

Arguments

+ + +
streamgage
+

Three-letter CDEC identifier for the streamgage

+ + +
reach
+

Integer comid identifier for reach identifying the prediction point (used for scaling)

+ + +
scale
+

Either "durhsi" to keep original flow scale and adjust duration HSI values (default), or "flow" to keep original duration HSI scale and adjust flow values.

+ + +
habitat_type
+

Either "rearing" (default) or "spawning"

+ + +
run
+

One of "fall" (default), "late fall", "winter", "spring", or "steelhead"

+ + +
wy_group
+

Either "Dry" or "Wet" for water year type scenario

+ + +
gradient
+

For rearing, either "Valley Foothill" (default) or "Valley Lowland"

+ +
+
+

Value

+

A tibble with columns for flow (flow_cfs) and duration habitat suitability index (durhsi)

+
+ +
+

Examples

+ 

+habitat_drc_weighted("FSB", habitat_type="rearing", gradient = "Valley Foothill", reach = 7978069)
+#> Error in habitat_drc_weighted("FSB", habitat_type = "rearing", gradient = "Valley Foothill",     reach = 7978069): object 'station_id' not found
+
+
+
+
+ +
+ + +
+ + + + + + + + diff --git a/docs/reference/habitat_fsa.html b/docs/reference/habitat_fsa.html new file mode 100644 index 0000000..7f0f2fa --- /dev/null +++ b/docs/reference/habitat_fsa.html @@ -0,0 +1,144 @@ + +Create Flow-To-Suitable-Area Curve for Reach, Mainstem, or Watershed — habitat_fsa • habistat + + +
+
+ + + +
+
+
+

Create Flow-To-Suitable-Area Curve for Reach, Mainstem, or Watershed

+ + +
+ +
+

Create Flow-To-Suitable-Area Curve for Reach, Mainstem, or Watershed

+
+ +
+ 
habitat_fsa(reach, mainstem, watershed, habitat_type = "rearing", units = "ft")
+
+ +
+

Arguments

+ + +
reach
+

Integer comid identifier for reach (must provide either reach, mainstem, OR watershed)

+ + +
mainstem
+

String name for mainstem (refer to cv_mainstems dataset for options)

+ + +
watershed
+

String name for watershed (refer to cv_watersheds dataset for options)

+ + +
habitat_type
+

Either "rearing" (default) or "spawning"

+ + +
units
+

Either "ft" for square ft per linear ft, or "ac" for total acres

+ +
+
+

Value

+

A tibble with columns for flow (flow_cfs) and suitable habitat (habitat)

+
+ +
+

Examples

+ 

+habitat_fsa(reach = 7978069, units = "ft")
+#> Error in select(filter(filter(habistat::wua_predicted, habitat == habitat_type),     comid == reach), flow_cfs, habitat = wua_per_lf_pred): could not find function "select"
+
+habitat_fsa(mainstem = "Feather River", units = "ac")
+#> Error in summarize(group_by(mutate(filter(filter(habistat::wua_predicted,     habitat == habitat_type), river_cvpia == mainstem), habitat_ft2 = wua_per_lf_pred *     reach_length_ft), flow_cfs), habitat = sum(habitat_ft2, na.rm = T)/sum(reach_length_ft),     .groups = "drop"): could not find function "summarize"
+
+
+
+
+ +
+ + +
+ + + + + + + + diff --git a/docs/reference/habitat_fsa_duration.html b/docs/reference/habitat_fsa_duration.html new file mode 100644 index 0000000..ec8bf9e --- /dev/null +++ b/docs/reference/habitat_fsa_duration.html @@ -0,0 +1,170 @@ + +Create Flow-To-Suitable-Area Curve (with Duration HSI applied) for Reach, Mainstem, or Watershed — habitat_fsa_duration • habistat + + +
+
+ + + +
+
+
+

Create Flow-To-Suitable-Area Curve (with Duration HSI applied) for Reach, Mainstem, or Watershed

+ + +
+ +
+

Create Flow-To-Suitable-Area Curve (with Duration HSI applied) for Reach, Mainstem, or Watershed

+
+ +
+ 
habitat_fsa_duration(
+  reach,
+  mainstem,
+  watershed,
+  streamgage,
+  habitat_type = "rearing",
+  units = "ft",
+  run = "fall",
+  wy_group = "Dry",
+  gradient = "Valley Foothill"
+)
+
+ +
+

Arguments

+ + +
reach
+

Integer comid identifier for reach (must provide either reach, mainstem, OR watershed)

+ + +
mainstem
+

String name for mainstem (refer to cv_mainstems dataset for options)

+ + +
watershed
+

String name for watershed (refer to cv_watersheds dataset for options)

+ + +
streamgage
+

Three-letter CDEC identifier for the streamgage

+ + +
habitat_type
+

Either "rearing" (default) or "spawning"

+ + +
units
+

Desired units for output, either "ft" for square ft per linear ft, or "ac" for total acres

+ + +
run
+

One of "fall" (default), "late fall", "winter", "spring", or "steelhead"

+ + +
wy_group
+

Either "Dry" or "Wet" for water year type scenario

+ + +
gradient
+

For rearing, either "Valley Foothill" (default) or "Valley Lowland"

+ +
+
+

Value

+

A tibble with columns for flow (flow_cfs) and suitable habitat (habitat)

+
+ +
+

Examples

+ 

+habitat_fsa_duration(reach = 7978069, streamgage = "FSB")
+#> Error in select(filter(filter(habistat::wua_predicted, habitat == habitat_type),     comid == reach), flow_cfs, habitat = wua_per_lf_pred): could not find function "select"
+
+habitat_fsa_duration(mainstem = "Feather River", streamgage = "FSB")
+#> Error in pull(filter(habistat::cv_mainstems, river_cvpia == mainstem),     comid): could not find function "pull"
+
+
+
+
+ +
+ + +
+ + + + + + + + diff --git a/docs/reference/habitat_fsa_duration_reach.html b/docs/reference/habitat_fsa_duration_reach.html new file mode 100644 index 0000000..b1b98a2 --- /dev/null +++ b/docs/reference/habitat_fsa_duration_reach.html @@ -0,0 +1,157 @@ + +Create Flow-To-Suitable-Area Curve (with Duration HSI applied) for Reach — habitat_fsa_duration_reach • habistat + + +
+
+ + + +
+
+
+

Create Flow-To-Suitable-Area Curve (with Duration HSI applied) for Reach

+ + +
+ +
+

Create Flow-To-Suitable-Area Curve (with Duration HSI applied) for Reach

+
+ +
+ 
habitat_fsa_duration_reach(
+  reach,
+  streamgage,
+  habitat_type = "rearing",
+  units = "ft",
+  run = "fall",
+  wy_group = "Dry",
+  gradient = "Valley Foothill"
+)
+
+ +
+

Arguments

+ + +
reach
+

Integer comid identifier for reach

+ + +
streamgage
+

Three-letter CDEC identifier for the streamgage

+ + +
habitat_type
+

Either "rearing" or "spawning"

+ + +
units
+

Desired units for output, either "ft" for square ft per linear ft, or "ac" for total acres

+ + +
run
+

One of "fall" (default), "late fall", "winter", "spring", or "steelhead"

+ + +
wy_group
+

Either "Dry" or "Wet" for water year type scenario

+ + +
gradient
+

For rearing, either "Valley Foothill" (default) or "Valley Lowland"

+ +
+
+

Value

+

A tibble with columns for flow (flow_cfs) and suitable habitat (habitat)

+
+ +
+

Examples

+ 

+habitat_fsa_duration_reach(reach = 7978069, streamgage = "FSB")
+#> Error in select(filter(filter(habistat::wua_predicted, habitat == habitat_type),     comid == reach), flow_cfs, habitat = wua_per_lf_pred): could not find function "select"
+
+
+
+
+ +
+ + +
+ + + + + + + + diff --git a/docs/reference/habitat_fsa_reach.html b/docs/reference/habitat_fsa_reach.html new file mode 100644 index 0000000..46f8680 --- /dev/null +++ b/docs/reference/habitat_fsa_reach.html @@ -0,0 +1,133 @@ + +Create Flow-To-Suitable-Area-Curve for Individual Reach (unscaled) — habitat_fsa_reach • habistat + + +
+
+ + + +
+
+
+

Create Flow-To-Suitable-Area-Curve for Individual Reach (unscaled)

+ + +
+ +
+

Create Flow-To-Suitable-Area-Curve for Individual Reach (unscaled)

+
+ +
+ 
habitat_fsa_reach(reach, habitat_type = "rearing", units = "ft")
+
+ +
+

Arguments

+ + +
reach
+

Integer comid identifier for reach

+ + +
habitat_type
+

Either "rearing" or "spawning"

+ + +
units
+

Desired units for output, either "ft" for square ft per linear ft, or "ac" for total acres

+ +
+
+

Value

+

A tibble with columns for flow (flow_cfs) and suitable habitat (habitat)

+
+ +
+

Examples

+ 

+habitat_fsa_reach(reach = 7978069)
+#> Error in select(filter(filter(habistat::wua_predicted, habitat == habitat_type),     comid == reach), flow_cfs, habitat = wua_per_lf_pred): could not find function "select"
+
+
+
+
+ +
+ + +
+ + + + + + + + diff --git a/docs/reference/habitat_fsa_reach_scaled.html b/docs/reference/habitat_fsa_reach_scaled.html new file mode 100644 index 0000000..69d6433 --- /dev/null +++ b/docs/reference/habitat_fsa_reach_scaled.html @@ -0,0 +1,142 @@ + +Create Flow-To-Suitable-Area Curve for Individual Reach (scaled by multiplier) — habitat_fsa_reach_scaled • habistat + + +
+
+ + + +
+
+
+

Create Flow-To-Suitable-Area Curve for Individual Reach (scaled by multiplier)

+ + +
+ +
+

Create Flow-To-Suitable-Area Curve for Individual Reach (scaled by multiplier)

+
+ +
+ 
habitat_fsa_reach_scaled(
+  reach,
+  multiplier,
+  habitat_type = "rearing",
+  units = "ft"
+)
+
+ +
+

Arguments

+ + +
reach
+

Integer comid identifier for reach

+ + +
multiplier
+

Numeric multiplier to scale flow

+ + +
habitat_type
+

Either "rearing" (default) or "spawning"

+ + +
units
+

Desired units for output, either "ft" for square ft per linear ft, or "ac" for total acres

+ +
+
+

Value

+

A tibble with columns for flow (flow_cfs) and suitable habitat (habitat)

+
+ +
+

Examples

+ 

+habitat_fsa_reach_scaled(reach = 7978069)
+#> Error in select(filter(filter(habistat::wua_predicted, habitat == habitat_type),     comid == reach), flow_cfs, habitat = wua_per_lf_pred): could not find function "select"
+
+
+
+
+ +
+ + +
+ + + + + + + + diff --git a/docs/reference/habitat_predict.html b/docs/reference/habitat_predict.html new file mode 100644 index 0000000..513a4b0 --- /dev/null +++ b/docs/reference/habitat_predict.html @@ -0,0 +1,199 @@ + +Predict Habitat Area using a Flow-to-Suitable-Area Curve — habitat_predict • habistat + + +
+
+ + + +
+
+
+

Predict Habitat Area using a Flow-to-Suitable-Area Curve

+ + +
+ +
+

Predict Habitat Area using a Flow-to-Suitable-Area Curve

+
+ +
+ 
habitat_predict(
+  x,
+  reach,
+  mainstem,
+  watershed,
+  streamgage,
+  fsa_x,
+  fsa_y,
+  habitat_type = "rearing",
+  units = "ft",
+  run = "fall",
+  wy_group = "Dry",
+  gradient = "Valley Foothill"
+)
+
+ +
+

Arguments

+ + +
x
+

A vector of flows at which to predict suitable habitat values

+ + +
reach
+

Integer comid identifier for reach (must provide either reach, mainstem, OR watershed)

+ + +
mainstem
+

String name for mainstem (refer to cv_mainstems dataset for options)

+ + +
watershed
+

String name for watershed (refer to cv_watersheds dataset for options)

+ + +
streamgage
+

(optional) Three-letter CDEC identifier for a streamgage

+ + +
fsa_x
+

(optional) Vector of flows for manually defined flow-to-suitable-area curve. If provided, overrides reach, mainstem, or watershed lookup.

+ + +
fsa_y
+

(optional) Vector of habitat values for manually defined flow-to-suitable-area curve, of same length as fsa_x

+ + +
habitat_type
+

Either "rearing" (default) or "spawning"

+ + +
units
+

Desired units for output, either "ft" for square ft per linear ft, or "ac" for total acres

+ + +
run
+

(required if streamgage is provided) One of "fall" (default), "late fall", "winter", "spring", or "steelhead"

+ + +
wy_group
+

(required if streamgage is provided) Either "Dry" or "Wet" for water year type scenario

+ + +
gradient
+

(required if streamgage is provided) For rearing, either "Valley Foothill" (default) or "Valley Lowland"

+ +
+
+

Value

+

A vector of the same length as x containing predicted suitable habitat values

+
+ +
+

Examples

+ 

+# example non-temporal prediction given comid
+habitat_predict(c(0, 10, 150, 300, 9999), reach = 7978069)
+#> Error in select(filter(filter(habistat::wua_predicted, habitat == habitat_type),     comid == reach), flow_cfs, habitat = wua_per_lf_pred): could not find function "select"
+
+# example temporal prediction given comid and streamgage
+habitat_predict(c(0, 10, 150, 300, 9999), reach = 7978069, streamgage = "FSB")
+#> Error in select(filter(filter(habistat::wua_predicted, habitat == habitat_type),     comid == reach), flow_cfs, habitat = wua_per_lf_pred): could not find function "select"
+
+# example non-temporal prediction given mainstem
+habitat_predict(c(0, 10, 150, 300, 9999), mainstem = "Feather River")
+#> Error in summarize(group_by(mutate(filter(filter(habistat::wua_predicted,     habitat == habitat_type), river_cvpia == mainstem), habitat_ft2 = wua_per_lf_pred *     reach_length_ft), flow_cfs), habitat = sum(habitat_ft2, na.rm = T)/43560,     .groups = "drop"): could not find function "summarize"
+
+# example temporal prediction given comid and streamgage
+habitat_predict(c(0, 10, 150, 300, 9999), mainstem = "Feather River", streamgage = "FSB")
+#> Error in pull(filter(habistat::cv_mainstems, river_cvpia == mainstem),     comid): could not find function "pull"
+
+# example manual prediction given custom provided flow-to-suitable-area curve
+habitat_predict(c(0, 10, 150, 300, 9999), fsa_x = c(0, 100, 1000), fsa_y = c(47, 470, 4700))
+#> Error in tibble(flow_cfs = fsa_x, habitat = fsa_y): could not find function "tibble"
+
+
+
+
+ +
+ + +
+ + + + + + + + diff --git a/docs/reference/index.html b/docs/reference/index.html index 4e3c07c..ce199e7 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -72,7 +72,39 @@

Reference

Suitable Habitat Functions

Main functions for accessing habitat suitability estimates (model outputs) for a particular reach/mainstem/watershed

- + +

habitat_predict()

+ +

Predict Habitat Area using a Flow-to-Suitable-Area Curve

+ +

habitat_fsa()

+ +

Create Flow-To-Suitable-Area Curve for Reach, Mainstem, or Watershed

+ +

habitat_fsa_reach()

+ +

Create Flow-To-Suitable-Area-Curve for Individual Reach (unscaled)

+ +

habitat_fsa_reach_scaled()

+ +

Create Flow-To-Suitable-Area Curve for Individual Reach (scaled by multiplier)

+ +

habitat_drc()

+ +

Create Duration Suitability Rating Curve for a streamgage

+ +

habitat_drc_weighted()

+ +

Create Duration Suitability Rating Curve for a streamgage (scaled to prediction point by drainage area and precipitation)

+ +

habitat_fsa_duration()

+ +

Create Flow-To-Suitable-Area Curve (with Duration HSI applied) for Reach, Mainstem, or Watershed

+ +

habitat_fsa_duration_reach()

+ +

Create Flow-To-Suitable-Area Curve (with Duration HSI applied) for Reach

+

Datasets

Packaged datasets including geometries, attributes, and habitat suitability estimates (model outputs) for all reaches/mainstems/watersheds

diff --git a/docs/reference/oom_range.html b/docs/reference/oom_range.html index c05e329..3805956 100644 --- a/docs/reference/oom_range.html +++ b/docs/reference/oom_range.html @@ -98,9 +98,8 @@

Value

Examples

oom_range(9, 47000)
-#>  [1]    10    20    30    40    50    60    70    80    90   100   200   300
-#> [13]   400   500   600   700   800   900  1000  2000  3000  4000  5000  6000
-#> [25]  7000  8000  9000 10000 20000 30000 40000 50000
+#>  [1]    10    20    30    40    50    60    70    80    90   100   200   300   400   500   600   700   800   900  1000  2000  3000  4000  5000  6000  7000  8000  9000
+#> [28] 10000 20000 30000 40000 50000
diff --git a/docs/reference/seq_log10.html b/docs/reference/seq_log10.html index 6200409..807acf0 100644 --- a/docs/reference/seq_log10.html +++ b/docs/reference/seq_log10.html @@ -106,11 +106,8 @@

Value

Examples

seq_log10(from = 50, to = 15000, by = 0.1, snap = 100)
-#>  [1]    50.11872    63.09573    79.43282   100.00000   125.89254   158.48932
-#>  [7]   199.52623   251.18864   316.22777   398.10717   501.18723   630.95734
-#> [13]   794.32823  1000.00000  1258.92541  1584.89319  1995.26231  2511.88643
-#> [19]  3162.27766  3981.07171  5011.87234  6309.57344  7943.28235 10000.00000
-#> [25] 12589.25412
+#>  [1]    50.11872    63.09573    79.43282   100.00000   125.89254   158.48932   199.52623   251.18864   316.22777   398.10717   501.18723   630.95734   794.32823
+#> [14]  1000.00000  1258.92541  1584.89319  1995.26231  2511.88643  3162.27766  3981.07171  5011.87234  6309.57344  7943.28235 10000.00000 12589.25412
diff --git a/docs/reference/wua_hydraulic.html b/docs/reference/wua_hydraulic.html index ee36517..00ef62e 100644 --- a/docs/reference/wua_hydraulic.html +++ b/docs/reference/wua_hydraulic.html @@ -88,16 +88,16 @@

Examples

wua_hydraulic |> pillar::glimpse()
 #> Rows: 8,000
 #> Columns: 10
-#> $ dataset    <chr> "Lower Yuba River", "Lower Yuba River", "Lower Yuba River",…
-#> $ comid      <dbl> 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 80611…
-#> $ flow_cfs   <dbl> 700, 800, 880, 930, 1000, 1300, 1500, 1700, 2000, 2500, 300…
-#> $ area_tot   <dbl> 109796.5, 112570.5, 114628.9, 115865.6, 117605.4, 124359.6,…
-#> $ area_wua   <dbl> 0.000000, 8.673892, 47.249076, 62.760336, 208.805351, 2453.…
-#> $ area_pct   <dbl> 0.000000e+00, 7.705299e-05, 4.121917e-04, 5.416651e-04, 1.7…
-#> $ length_ft  <dbl> 1181.961, 1181.961, 1181.961, 1181.961, 1181.961, 1181.961,…
-#> $ ind_per_lf <dbl> 92.89354, 95.24047, 96.98199, 98.02828, 99.50026, 105.21469…
-#> $ wua_per_lf <dbl> 0.000000000, 0.007338563, 0.039975169, 0.053098500, 0.17666…
-#> $ habitat    <fct> rearing, rearing, rearing, rearing, rearing, rearing, reari…
+#> $ dataset    <chr> "Lower Yuba River", "Lower Yuba River", "Lower Yuba River", "Lower Yuba River", "Lower Yuba River", "Lower Yuba River", "Lower Yuba River", "Lower…
+#> $ comid      <dbl> 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 8061185, 80…
+#> $ flow_cfs   <dbl> 700, 800, 880, 930, 1000, 1300, 1500, 1700, 2000, 2500, 3000, 4000, 5000, 7500, 10000, 15000, 21100, 30000, 42200, 84400, 110400, 700, 800, 880, 9…
+#> $ area_tot   <dbl> 109796.5, 112570.5, 114628.9, 115865.6, 117605.4, 124359.6, 128216.3, 131607.2, 135551.5, 141533.1, 145814.9, 152763.3, 293637.8, 314680.5, 330108…
+#> $ area_wua   <dbl> 0.000000, 8.673892, 47.249076, 62.760336, 208.805351, 2453.045923, 4692.460678, 6717.566378, 8573.878165, 9825.567214, 9915.011828, 8919.607646, 1…
+#> $ area_pct   <dbl> 0.000000e+00, 7.705299e-05, 4.121917e-04, 5.416651e-04, 1.775474e-03, 1.972542e-02, 3.659801e-02, 5.104255e-02, 6.325180e-02, 6.942238e-02, 6.7997…
+#> $ length_ft  <dbl> 1181.9606, 1181.9606, 1181.9606, 1181.9606, 1181.9606, 1181.9606, 1181.9606, 1181.9606, 1181.9606, 1181.9606, 1181.9606, 1181.9606, 1181.9606, 118…
+#> $ ind_per_lf <dbl> 92.89354, 95.24047, 96.98199, 98.02828, 99.50026, 105.21469, 108.47763, 111.34651, 114.68362, 119.74437, 123.36700, 129.24566, 248.43277, 266.2360…
+#> $ wua_per_lf <dbl> 0.000000000, 0.007338563, 0.039975169, 0.053098500, 0.176660158, 2.075404092, 3.970065134, 5.683409600, 7.253945659, 8.312939520, 8.388614303, 7.5…
+#> $ habitat    <fct> rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, re…
diff --git a/docs/reference/wua_hydraulic_interp.html b/docs/reference/wua_hydraulic_interp.html index ecf252e..b2e9ece 100644 --- a/docs/reference/wua_hydraulic_interp.html +++ b/docs/reference/wua_hydraulic_interp.html @@ -88,16 +88,16 @@

Examples

wua_hydraulic_interp |> pillar::glimpse()
 #> Rows: 12,214
 #> Columns: 10
-#> $ habitat    <fct> rearing, rearing, rearing, rearing, rearing, rearing, reari…
-#> $ dataset    <chr> "Deer Creek", "Deer Creek", "Deer Creek", "Deer Creek", "De…
-#> $ comid      <dbl> 12069362, 12069362, 12069362, 12069362, 12069362, 12069362,…
-#> $ length_ft  <dbl> 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.6858,…
-#> $ flow_cfs   <dbl> 100.0000, 112.2018, 125.8925, 141.2538, 158.4893, 177.8279,…
-#> $ area_tot   <dbl> 68364.00, 68685.48, 69046.18, 69450.90, 69905.00, 70414.51,…
-#> $ area_wua   <dbl> 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.000…
-#> $ area_pct   <dbl> 0.000000000, 0.000000000, 0.000000000, 0.000000000, 0.00000…
-#> $ ind_per_lf <dbl> 81.51324, 81.89655, 82.32663, 82.80919, 83.35064, 83.95814,…
-#> $ wua_per_lf <dbl> 0.00000000, 0.00000000, 0.00000000, 0.00000000, 0.00000000,…
+#> $ habitat    <fct> rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, rearing, re…
+#> $ dataset    <chr> "Deer Creek", "Deer Creek", "Deer Creek", "Deer Creek", "Deer Creek", "Deer Creek", "Deer Creek", "Deer Creek", "Deer Creek", "Deer Creek", "Deer …
+#> $ comid      <dbl> 12069362, 12069362, 12069362, 12069362, 12069362, 12069362, 12069362, 12069362, 12069362, 12069362, 12069362, 12069362, 12069362, 12069362, 120693…
+#> $ length_ft  <dbl> 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.6858, 838.68…
+#> $ flow_cfs   <dbl> 100.0000, 112.2018, 125.8925, 141.2538, 158.4893, 177.8279, 199.5262, 223.8721, 251.1886, 281.8383, 316.2278, 354.8134, 398.1072, 446.6836, 501.18…
+#> $ area_tot   <dbl> 68364.00, 68685.48, 69046.18, 69450.90, 69905.00, 70414.51, 70986.18, 71627.62, 72350.23, 73232.94, 74277.24, 75516.61, 76907.20, 78222.85, 79691.…
+#> $ area_wua   <dbl> 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 77.89328, 263.10427, 470.91442, 631.25484, 809.03387, 10…
+#> $ area_pct   <dbl> 0.0000000000, 0.0000000000, 0.0000000000, 0.0000000000, 0.0000000000, 0.0000000000, 0.0000000000, 0.0000000000, 0.0000000000, 0.0000000000, 0.0010…
+#> $ ind_per_lf <dbl> 81.51324, 81.89655, 82.32663, 82.80919, 83.35064, 83.95814, 84.63978, 85.40459, 86.26619, 87.31868, 88.56384, 90.04159, 91.69965, 93.26836, 95.019…
+#> $ wua_per_lf <dbl> 0.00000000, 0.00000000, 0.00000000, 0.00000000, 0.00000000, 0.00000000, 0.00000000, 0.00000000, 0.00000000, 0.00000000, 0.09287539, 0.31371016, 0.…
diff --git a/docs/reference/wua_predicted.html b/docs/reference/wua_predicted.html index 428dc22..0e99927 100644 --- a/docs/reference/wua_predicted.html +++ b/docs/reference/wua_predicted.html @@ -88,17 +88,17 @@

Examples

wua_predicted |> pillar::glimpse()
 #> Rows: 568,800
 #> Columns: 11
-#> $ comid              <dbl> 342455, 342455, 342455, 342455, 342455, 342455, 342…
-#> $ flow_idx           <int> 50, 56, 63, 70, 79, 89, 100, 112, 125, 141, 158, 17…
-#> $ flow_cfs           <dbl> 50.11872, 56.23413, 63.09573, 70.79458, 79.43282, 8…
-#> $ river_group        <fct> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA,…
-#> $ river_cvpia        <fct> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA,…
-#> $ watershed_level_3  <fct> Stanislaus River, Stanislaus River, Stanislaus Rive…
-#> $ reach_length_ft    <dbl> 291.9948, 291.9948, 291.9948, 291.9948, 291.9948, 2…
-#> $ habitat            <chr> "rearing", "rearing", "rearing", "rearing", "rearin…
-#> $ wua_per_lf_pred_SD <dbl> 0.02362203, 0.02439776, 0.02512100, 0.02747708, 0.0…
-#> $ wua_per_lf_pred_SN <dbl> 0.5698906, 0.5807675, 0.6158285, 0.6441989, 0.66992…
-#> $ wua_per_lf_pred    <dbl> 0.2967563, 0.3025826, 0.3204747, 0.3358380, 0.35092…
+#> $ comid              <dbl> 342455, 342455, 342455, 342455, 342455, 342455, 342455, 342455, 342455, 342455, 342455, 342455, 342455, 342455, 342455, 342455, 342455, 34…
+#> $ flow_idx           <int> 50, 56, 63, 70, 79, 89, 100, 112, 125, 141, 158, 177, 199, 223, 251, 281, 316, 354, 398, 446, 501, 562, 630, 707, 794, 891, 1000, 1122, 12…
+#> $ flow_cfs           <dbl> 50.11872, 56.23413, 63.09573, 70.79458, 79.43282, 89.12509, 100.00000, 112.20185, 125.89254, 141.25375, 158.48932, 177.82794, 199.52623, 2…
+#> $ river_group        <fct> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA…
+#> $ river_cvpia        <fct> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA…
+#> $ watershed_level_3  <fct> Stanislaus River, Stanislaus River, Stanislaus River, Stanislaus River, Stanislaus River, Stanislaus River, Stanislaus River, Stanislaus R…
+#> $ reach_length_ft    <dbl> 291.9948, 291.9948, 291.9948, 291.9948, 291.9948, 291.9948, 291.9948, 291.9948, 291.9948, 291.9948, 291.9948, 291.9948, 291.9948, 291.9948…
+#> $ habitat            <chr> "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "reari…
+#> $ wua_per_lf_pred_SD <dbl> 0.02362203, 0.02439776, 0.02512100, 0.02747708, 0.03192452, 0.03648052, 0.03987161, 0.05074194, 0.05945630, 0.06928838, 0.08196109, 0.0866…
+#> $ wua_per_lf_pred_SN <dbl> 0.5698906, 0.5807675, 0.6158285, 0.6441989, 0.6699205, 0.6917909, 0.7078419, 0.7386578, 0.7409886, 0.7309287, 0.7334424, 0.7387259, 0.7760…
+#> $ wua_per_lf_pred    <dbl> 0.2967563, 0.3025826, 0.3204747, 0.3358380, 0.3509225, 0.3641357, 0.3738568, 0.3946999, 0.4002224, 0.4001085, 0.4077018, 0.4126926, 0.4333…
diff --git a/docs/reference/wua_predicted_cv_mainstems.html b/docs/reference/wua_predicted_cv_mainstems.html index dd640e4..c7c1603 100644 --- a/docs/reference/wua_predicted_cv_mainstems.html +++ b/docs/reference/wua_predicted_cv_mainstems.html @@ -88,16 +88,16 @@

Examples

wua_predicted_cv_mainstems |> pillar::glimpse()
 #> Rows: 6,900
 #> Columns: 10
-#> $ habitat            <chr> "rearing", "rearing", "rearing", "rearing", "rearin…
-#> $ river_cvpia        <chr> "American River", "American River", "American River…
-#> $ flow_idx           <int> 50, 56, 63, 70, 79, 89, 100, 112, 125, 141, 158, 17…
-#> $ flow_cfs           <dbl> 50.11872, 56.23413, 63.09573, 70.79458, 79.43282, 8…
-#> $ wua_per_lf_pred_SD <dbl> 0.006919667, 0.007346851, 0.007871728, 0.008330074,…
-#> $ wua_per_lf_pred_SN <dbl> 0.04107092, 0.04107092, 0.04107092, 0.04107092, 0.0…
-#> $ wua_acres_pred_SD  <dbl> 0.02456447, 0.02608095, 0.02794424, 0.02957135, 0.0…
-#> $ wua_acres_pred_SN  <dbl> 0.14656996, 0.14656996, 0.14656996, 0.14656996, 0.1…
-#> $ wua_per_lf_pred    <dbl> 0.02399529, 0.02420888, 0.02447132, 0.02470050, 0.0…
-#> $ wua_acres_pred     <dbl> 0.08556722, 0.08632546, 0.08725710, 0.08807065, 0.0…
+#> $ habitat            <chr> "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "reari…
+#> $ river_cvpia        <chr> "American River", "American River", "American River", "American River", "American River", "American River", "American River", "American Ri…
+#> $ flow_idx           <int> 50, 56, 63, 70, 79, 89, 100, 112, 125, 141, 158, 177, 199, 223, 251, 281, 316, 354, 398, 446, 501, 562, 630, 707, 794, 891, 1000, 1122, 12…
+#> $ flow_cfs           <dbl> 50.11872, 56.23413, 63.09573, 70.79458, 79.43282, 89.12509, 100.00000, 112.20185, 125.89254, 141.25375, 158.48932, 177.82794, 199.52623, 2…
+#> $ wua_per_lf_pred_SD <dbl> 0.006919667, 0.007346851, 0.007871728, 0.008330074, 0.009601185, 0.011085319, 0.012560396, 0.015474479, 0.018190542, 0.021425656, 0.025078…
+#> $ wua_per_lf_pred_SN <dbl> 0.04107092, 0.04107092, 0.04107092, 0.04107092, 0.04107092, 0.04107092, 0.04107092, 0.04146438, 0.04371980, 0.04667143, 0.05007491, 0.0524…
+#> $ wua_acres_pred_SD  <dbl> 0.02456447, 0.02608095, 0.02794424, 0.02957135, 0.03408373, 0.03935233, 0.04458878, 0.05493363, 0.06457552, 0.07606001, 0.08902782, 0.1029…
+#> $ wua_acres_pred_SN  <dbl> 0.14656996, 0.14656996, 0.14656996, 0.14656996, 0.14656996, 0.14656996, 0.14656996, 0.14797411, 0.15602302, 0.16655652, 0.17870254, 0.1870…
+#> $ wua_per_lf_pred    <dbl> 0.02399529, 0.02420888, 0.02447132, 0.02470050, 0.02533605, 0.02607812, 0.02681566, 0.02846943, 0.03095517, 0.03404854, 0.03757676, 0.0407…
+#> $ wua_acres_pred     <dbl> 0.08556722, 0.08632546, 0.08725710, 0.08807065, 0.09032684, 0.09296114, 0.09557937, 0.10145387, 0.11029927, 0.12130826, 0.13386518, 0.1449…
diff --git a/docs/reference/wua_predicted_cv_watersheds.html b/docs/reference/wua_predicted_cv_watersheds.html index 0b93fd8..8c16975 100644 --- a/docs/reference/wua_predicted_cv_watersheds.html +++ b/docs/reference/wua_predicted_cv_watersheds.html @@ -88,16 +88,16 @@

Examples

wua_predicted_cv_watersheds |> pillar::glimpse()
 #> Rows: 2,950
 #> Columns: 10
-#> $ habitat            <chr> "rearing", "rearing", "rearing", "rearing", "rearin…
-#> $ watershed_level_3  <chr> "American River", "American River", "American River…
-#> $ flow_idx           <int> 50, 56, 63, 70, 79, 89, 100, 112, 125, 141, 158, 17…
-#> $ flow_cfs           <dbl> 50.11872, 56.23413, 63.09573, 70.79458, 79.43282, 8…
-#> $ wua_per_lf_pred_SD <dbl> 0.007333726, 0.007362360, 0.007397907, 0.007428896,…
-#> $ wua_per_lf_pred_SN <dbl> 0.1805469, 0.1805469, 0.1805469, 0.1805469, 0.18054…
-#> $ wua_acres_pred_SD  <dbl> 0.4105578, 0.4121608, 0.4141508, 0.4158856, 0.42062…
-#> $ wua_acres_pred_SN  <dbl> 10.11302, 10.11302, 10.11302, 10.11302, 10.11302, 1…
-#> $ wua_per_lf_pred    <dbl> 0.09394031, 0.09395463, 0.09397240, 0.09398789, 0.0…
-#> $ wua_acres_pred     <dbl> 5.261789, 5.262591, 5.263586, 5.264453, 5.266823, 5…
+#> $ habitat            <chr> "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "rearing", "reari…
+#> $ watershed_level_3  <chr> "American River", "American River", "American River", "American River", "American River", "American River", "American River", "American Ri…
+#> $ flow_idx           <int> 50, 56, 63, 70, 79, 89, 100, 112, 125, 141, 158, 177, 199, 223, 251, 281, 316, 354, 398, 446, 501, 562, 630, 707, 794, 891, 1000, 1122, 12…
+#> $ flow_cfs           <dbl> 50.11872, 56.23413, 63.09573, 70.79458, 79.43282, 89.12509, 100.00000, 112.20185, 125.89254, 141.25375, 158.48932, 177.82794, 199.52623, 2…
+#> $ wua_per_lf_pred_SD <dbl> 0.007333726, 0.007362360, 0.007397907, 0.007428896, 0.007513574, 0.007611618, 0.007715027, 0.007928880, 0.008130744, 0.008423004, 0.008828…
+#> $ wua_per_lf_pred_SN <dbl> 0.1805469, 0.1805469, 0.1805469, 0.1805469, 0.1805469, 0.1805469, 0.1805469, 0.1805731, 0.1807925, 0.1811093, 0.1814899, 0.1817964, 0.1819…
+#> $ wua_acres_pred_SD  <dbl> 0.41055779, 0.41216080, 0.41415079, 0.41588558, 0.42062608, 0.42611478, 0.43190383, 0.44387577, 0.45517660, 0.47153793, 0.49425221, 0.5224…
+#> $ wua_acres_pred_SN  <dbl> 10.1130202, 10.1130202, 10.1130202, 10.1130202, 10.1130202, 10.1130202, 10.1130202, 10.1144865, 10.1267761, 10.1445206, 10.1658417, 10.183…
+#> $ wua_per_lf_pred    <dbl> 0.09394031, 0.09395463, 0.09397240, 0.09398789, 0.09403023, 0.09407925, 0.09413096, 0.09425097, 0.09446161, 0.09476613, 0.09515933, 0.0955…
+#> $ wua_acres_pred     <dbl> 5.2617890, 5.2625905, 5.2635855, 5.2644529, 5.2668232, 5.2695675, 5.2724620, 5.2791811, 5.2909763, 5.3080292, 5.3300469, 5.3527309, 5.3761…
diff --git a/docs/sitemap.xml b/docs/sitemap.xml index ae03cde..6ee3116 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -34,6 +34,14 @@ /reference/flow_threshold_split_apply.html /reference/glimpse_plot.html /reference/habistat-package.html +/reference/habitat_drc.html +/reference/habitat_drc_weighted.html +/reference/habitat_fsa.html +/reference/habitat_fsa_duration.html +/reference/habitat_fsa_duration_reach.html +/reference/habitat_fsa_reach.html +/reference/habitat_fsa_reach_scaled.html +/reference/habitat_predict.html /reference/hex_color_blend.html /reference/hqt.html /reference/index.html diff --git a/man/habitat_fsa_duration.Rd b/man/habitat_fsa_duration.Rd index 1d8ca3a..7f817e3 100644 --- a/man/habitat_fsa_duration.Rd +++ b/man/habitat_fsa_duration.Rd @@ -42,6 +42,7 @@ A \code{tibble} with columns for flow (\code{flow_cfs}) and suitable habitat (\c Create Flow-To-Suitable-Area Curve (with Duration HSI applied) for Reach, Mainstem, or Watershed } \examples{ + habitat_fsa_duration(reach = 7978069, streamgage = "FSB") habitat_fsa_duration(mainstem = "Feather River", streamgage = "FSB") diff --git a/man/habitat_predict.Rd b/man/habitat_predict.Rd index 87c8ef2..c60f818 100644 --- a/man/habitat_predict.Rd +++ b/man/habitat_predict.Rd @@ -51,6 +51,7 @@ A vector of the same length as \code{x} containing predicted suitable habitat va Predict Habitat Area using a Flow-to-Suitable-Area Curve } \examples{ + # example non-temporal prediction given comid habitat_predict(c(0, 10, 150, 300, 9999), reach = 7978069)