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sessionInfo_scRNA-TCR_PBMC.txt
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R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22631)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8 LC_NUMERIC=C LC_TIME=English_United States.utf8
attached base packages:
[1] grid tools stats graphics grDevices utils datasets methods base
other attached packages:
[1] cowplot_1.1.1 ggnewscale_0.4.9 pals_1.7 RColorBrewer_1.1-3 kableExtra_1.3.4 gridExtra_2.3 scRepertoire_1.8.0 lubridate_1.9.2 forcats_1.0.0 stringr_1.5.0 dplyr_1.1.2
[12] purrr_1.0.1 readr_2.1.4 tidyr_1.3.0 tibble_3.2.1 tidyverse_2.0.0 ggprism_1.0.4 patchwork_1.2.0 ggpubr_0.5.0 ggplot2_3.4.2 SeuratObject_4.1.3 Seurat_4.1.1
loaded via a namespace (and not attached):
[1] utf8_1.2.2 reticulate_1.28 tidyselect_1.2.0 htmlwidgets_1.6.2 Rtsne_0.16 munsell_0.5.0 codetools_0.2-18
[8] ica_1.0-3 future_1.32.0 miniUI_0.1.1.1 withr_2.5.0 spatstat.random_3.1-4 colorspace_2.1-0 progressr_0.13.0
[15] Biobase_2.58.0 knitr_1.42 ggalluvial_0.12.5 rstudioapi_0.14 stats4_4.2.2 SingleCellExperiment_1.20.1 ROCR_1.0-11
[22] ggsignif_0.6.4 tensor_1.5 listenv_0.9.0 MatrixGenerics_1.10.0 GenomeInfoDbData_1.2.9 polyclip_1.10-4 farver_2.1.1
[29] parallelly_1.35.0 vctrs_0.6.2 generics_0.1.3 xfun_0.39 timechange_0.2.0 R6_2.5.1 doParallel_1.0.17
[36] GenomeInfoDb_1.34.9 graphlayouts_0.8.4 VGAM_1.1-8 bitops_1.0-7 spatstat.utils_3.0-2 DelayedArray_0.24.0 promises_1.2.0.1
[43] scales_1.2.1 ggraph_2.1.0 rgeos_0.6-2 gtable_0.3.3 globals_0.16.2 goftest_1.2-3 tidygraph_1.2.3
[50] rlang_1.1.0 systemfonts_1.0.4 splines_4.2.2 rstatix_0.7.2 lazyeval_0.2.2 dichromat_2.0-0.1 spatstat.geom_3.1-0
[57] broom_1.0.4 reshape2_1.4.4 abind_1.4-5 backports_1.4.1 httpuv_1.6.9 cubature_2.0.4.6 ellipsis_0.3.2
[64] spatstat.core_2.4-4 BiocGenerics_0.44.0 ggridges_0.5.4 Rcpp_1.0.10 plyr_1.8.8 zlibbioc_1.44.0 RCurl_1.98-1.9
[71] rpart_4.1.19 deldir_1.0-6 pbapply_1.7-0 viridis_0.6.2 S4Vectors_0.36.1 zoo_1.8-11 SummarizedExperiment_1.28.0
[78] ggrepel_0.9.3 cluster_2.1.4 magrittr_2.0.3 data.table_1.14.6 scattermore_0.8 SparseM_1.81 lmtest_0.9-40
[85] RANN_2.6.1 truncdist_1.0-2 fitdistrplus_1.1-11 matrixStats_0.63.0 gsl_2.1-8 evaluate_0.20 hms_1.1.3
[92] mime_0.12 xtable_1.8-4 IRanges_2.32.0 compiler_4.2.2 maps_3.4.1 writexl_1.4.2 KernSmooth_2.23-20
[99] htmltools_0.5.4 mgcv_1.8-41 later_1.3.0 tzdb_0.3.0 powerTCR_1.18.0 DBI_1.1.3 tweenr_2.0.2
[106] MASS_7.3-58.1 Matrix_1.5-3 car_3.1-2 permute_0.9-7 cli_3.6.0 parallel_4.2.2 evd_2.3-6.1
[113] igraph_1.3.5 GenomicRanges_1.50.2 pkgconfig_2.0.3 sp_1.6-0 plotly_4.10.1 spatstat.sparse_3.0-1 xml2_1.3.3
[120] foreach_1.5.2 svglite_2.1.1 EnhancedVolcano_1.16.0 webshot_0.5.4 stringdist_0.9.10 XVector_0.38.0 rvest_1.0.3
[127] digest_0.6.31 sctransform_0.3.5 RcppAnnoy_0.0.20 vegan_2.6-4 spatstat.data_3.0-1 rmarkdown_2.21 leiden_0.4.3
[134] uwot_0.1.11 evmix_2.12 shiny_1.7.4 lifecycle_1.0.3 nlme_3.1-161 jsonlite_1.8.4 carData_3.0-5
[141] mapproj_1.2.11 viridisLite_0.4.1 fansi_1.0.4 pillar_1.9.0 ggsci_2.9 lattice_0.20-45 fastmap_1.1.0
[148] httr_1.4.6 survival_3.5-0 glue_1.6.2 png_0.1-8 iterators_1.0.14 ggforce_0.4.1 stringi_1.7.12
[155] irlba_2.3.5.1 future.apply_1.10.0