.gitignore

# General
*/*~
*/*/*~
analysis
README.pdf

# Data
data/*.dmp
data/*.txt
data/gc.prt
data/ecl.*
data/neidb
data/results
data/results.zip
data/taxdump.tar.gz

# Main document
doc/*.aux
doc/*.bbl
doc/*.blg
doc/*.dvi
doc/*.log
doc/*.toc
doc/mapro.pdf
doc/mapro.ps
doc/date.txt
doc/version.txt
intro/pro.ps

# Chapters in main document
doc/anam.tex
doc/driver.tex
doc/genomes.tex
doc/intro.tex
doc/markers.tex
doc/primers.tex

# Directories of individual programs
anam/anam.sh
anam/findMarker.awk
anam/afa
anam/gff*
anam/mle
anam/yen
anam/ype
anam/ssu
driver/aae
driver/ecl
driver/driver.sh
driver/test.sh
genomes/ecl
genomes/genomes.sh
genomes/test.sh
markers/ecl
markers/markers.sh
markers/test.sh
primers/ecl
primers/primers.sh
primers/test.sh

# Scripts
scripts/anam.sh
scripts/driver.sh
scripts/findMarker.awk
scripts/genomes.sh
scripts/markers.sh
scripts/primers.sh

#Docker
Docker/*.old