main.yml

name: Deploy to shinyapps.io
on:

  # run on any push 
  push:

  # run on request (via button in actions menu)
  workflow_dispatch:
      
jobs:
  deploy:
    name: Deploy to shinyapps

    # allow skipping deployment for commits containing '[automated]' or '[no-deploy]' in the commit message
    if: "!contains(github.event.head_commit.message, '[automated]') && !contains(github.event.head_commit.message, '[no-deploy]')"
    runs-on: ubuntu-latest
    steps:
      # Step 1: Check out the code from the repository
      - uses: actions/checkout@v2
      - uses: r-lib/actions/setup-r@v2-branch

      # Step 2: Install the required Debian packages
      - name: Install system dependencies
        run: |
          sudo apt-get update
          sudo apt-get install -y librsvg2-dev 
          sudo apt install cmake


      # Step 3: Verify that pkg-config can find the libraries
      - name: Verify pkg-config for librsvg
        run: |
          pkg-config --modversion librsvg-2.0
            
      # Step 4: Install R packages
      - name: Install shiny
        run: |
          install.packages(c("shiny",
          "renv",
          "rsconnect",
          "rsvg",
          "shinycssloaders",
          "tidyverse",
          "svglite",
          "plotly",
          "ggcorrplot",
          "DT",
          "broom",
          "ggpp",
          "ggpubr",
          "gridExtra",
          "grid",
          "foreach",
          "shinyjs",
          "lubridate",
          "emojifont",
          "showtext",
          "patchwork",
          "IRkernel"))
        shell: Rscript {0}
          
      # Step 5: Deploy to shinyapps.io
      - name: Push to shiny.io
        run: |
          "rsconnect::setAccountInfo(name='easyeyes', token=${{secrets.TOKEN}}, secret=${{secrets.SECRET}})"
          "rsconnect::deployApp(appName = 'easyeyes_app')" 
        shell: Rscript {0}