BioMongoDB is envisioned as a MongoDB database to facilitate the storage of information derived from various initiatives within the BioTeam. Find more information here.
BioMongo tools is a set of tools designed to manage the BioMongo database. The tools provided here facilitate the manage of information (insertion of information, update of information, etc.) in the BioMongoDB and maintain a log of these changes within the database itself. This new collection will be named log_details.
To install BioMongo tools, follow these steps:
- Clone this repository to your local machine:
git clone https://github.com/EGA-archive/ega-biomongo-tools.git
- Install the required dependencies, taking into account that
python --version == 3.10.12:
pip install -r requirements.txt
BioMongo tools should be as easy to use as possible. The only thing you need to do is to modify the conf.py file taking into account your needs.
Then, the only command you'll need is:
python3 tools.py
To understand how to use the tool, I have written some use cases explained here.