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Please bring MAMO back #592

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ntung opened this issue Nov 23, 2023 · 5 comments
Closed

Please bring MAMO back #592

ntung opened this issue Nov 23, 2023 · 5 comments
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@ntung
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ntung commented Nov 23, 2023

Hello Team,

We are the BioModels repository, one of the EBI's core resources. Our data are heavily relied on MAMO. As things stand, this ontology won't be fixed as you mentioned in a comment of #453 except for having a specific request. Could you please arrange your time to bring it back?

Thank you,
Tung

@ntung
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ntung commented Nov 23, 2023

@serjoshua As I understand so far, you need us to provide an OWL file because MAMO is an OBO. Please have a look at https://data.bioontology.org/ontologies/MAMO/submissions/17/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb for MAMO.

@henrietteharmse
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henrietteharmse commented Nov 23, 2023

Hi @ntung. It needs to be an OWL RDF file to load in OLS 4. I am assigning this @udp whose team is responsible for ontology creation. They will be able help you to get MAMO into a format that can be processed by OLS.

@jamesamcl
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According to the OBO foundry, MAMO is an orphaned ontology which means it has no maintainers and is not responsive to requests for changes. I suggest we do a one time conversion of it using robot and load it into OLS4 from the NFS as a static file.

@cthoyt
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cthoyt commented Nov 29, 2023

Following the link to MAMO's sourceforge page https://sourceforge.net/p/mamo-ontology/wiki/Home/ it appears that within the last year, someone named Anna Zhukova has made updates. Does anyone know them or how to get in touch?

@henrietteharmse
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Now available at: https://www.ebi.ac.uk/ols4/ontologies/mamo

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