diff --git a/.github/workflows/cloudFunctionTests.yml b/.github/workflows/cloudFunctionTests.yml index b394e8b..9dab1d7 100644 --- a/.github/workflows/cloudFunctionTests.yml +++ b/.github/workflows/cloudFunctionTests.yml @@ -24,7 +24,7 @@ jobs: - name: Setup poetry uses: abatilo/actions-poetry@v2 with: - poetry-version: "1.1.13" + poetry-version: "1.2.2" - name: Poetry install run: | diff --git a/functions/functions/datasets/delete_datasets.py b/functions/functions/datasets/delete_datasets.py index 6efc2f5..bf6a05f 100644 --- a/functions/functions/datasets/delete_datasets.py +++ b/functions/functions/datasets/delete_datasets.py @@ -4,7 +4,7 @@ from functions_framework import Context from humps.main import decamelize from loguru import logger -from models import Dataset +from models.dataset import CloudDataset from utils.cloud_storage import delete_folder_blob from utils.firestore_event_converter import unpack @@ -27,7 +27,7 @@ def delete_dataset_from_bucket(data: Dict, context: Context) -> None: logger.info(f"Raw firestore dataset event: {data}") dataset = decamelize(unpack(data["oldValue"])) - dataset = Dataset.from_dict(dataset) + dataset = CloudDataset.from_dict(dataset) delete_folder_blob( bucket_name=DATASET_BUCKET_NAME, diff --git a/functions/functions/datasets/process_dataset.py b/functions/functions/datasets/process_dataset.py index a8bcb9a..1a82002 100644 --- a/functions/functions/datasets/process_dataset.py +++ b/functions/functions/datasets/process_dataset.py @@ -4,7 +4,7 @@ from functions_framework import Context from humps.main import decamelize from loguru import logger -from models.dataset import Dataset, ProcessingJob +from models.dataset import CloudDataset, ProcessingJob from utils.firestore_event_converter import unpack from utils.pubsub import publish_to_topic @@ -23,9 +23,9 @@ def process_dataset(data: Dict, context: Context) -> None: """ # Convert the firestore event into a dataset object. dataset = decamelize(unpack(data["value"])) - dataset = Dataset.from_dict(dataset) + dataset = CloudDataset.from_dict(dataset) logger.info(f"Firestore newly-created dataset information: {dataset}") - jobs = map(ProcessingJob.to_dict, dataset.to_batch()) + jobs = map(ProcessingJob.to_dict, dataset.to_jobs()) publish_to_topic(topic_name=TOPIC_NAME, data=jobs) diff --git a/functions/functions/datasets/process_file.py b/functions/functions/datasets/process_file.py index d436453..1ee3d4f 100644 --- a/functions/functions/datasets/process_file.py +++ b/functions/functions/datasets/process_file.py @@ -1,18 +1,14 @@ import base64 import json import os -from copy import copy -from itertools import chain from pathlib import Path from typing import List, Tuple -import utils.audio as audio +from elpis.datasets import process_batch from firebase_admin import firestore from loguru import logger -from models import Annotation, DatasetOptions, ProcessingJob -from utils.clean_text import clean_text +from models import ProcessingJob from utils.cloud_storage import download_blob, list_blobs_with_prefix, upload_blob -from utils.extract_annotations import extract_annotations from utils.firebase import get_firestore_client DEFAULT_DIR = Path("/tmp/") @@ -36,29 +32,18 @@ def process_dataset_file(event, context) -> None: # Decode and deserialize the processing job data = base64.b64decode(event["data"]).decode("utf-8") data = json.loads(data) - logger.info(f"Event data: {data}") - job = ProcessingJob.from_dict(data) + try: + job = ProcessingJob.from_dict(data) + except Exception as error: + logger.error(f"Failed to deserialize job: {data}") + logger.error(error) + return transcription_file, audio_file = download_files(job) - annotations = extract_annotations(transcription_file, job.options.elan_options) - - # Resample audio to standardise for training - audio.resample( - audio_path=audio_file, destination=audio_file, sample_rate=TARGET_SAMPLE_RATE - ) + job.transcription_file = transcription_file + job.audio_file = audio_file - # Clean the annotations - annotations = map( - lambda annotation: clean_annotation(annotation, job.options), annotations - ) - - # Generate training files from the annotations - processed_files = chain( - *map( - lambda annotation: generate_training_files(annotation, audio_file), - annotations, - ) - ) + processed_files = process_batch(job, output_dir=DEFAULT_DIR) # Upload all the training files for file in processed_files: @@ -73,7 +58,7 @@ def download_files(job: ProcessingJob, dir: Path = DEFAULT_DIR) -> Tuple[Path, P """Download the required transcription and audio files for the job. Parameters: - job: The processing job. + job: The job to process. dir: The directory in which to store the files. Returns: @@ -81,83 +66,23 @@ def download_files(job: ProcessingJob, dir: Path = DEFAULT_DIR) -> Tuple[Path, P and audio files. """ # Download transcription file - transcription_file = dir / job.transcription_file_name + transcription_file = dir / job.transcription_file download_blob( bucket_name=FILES_BUCKET, - source_blob_name=f"{job.user_id}/{job.transcription_file_name}", + source_blob_name=f"{job.user_id}/{job.transcription_file}", destination_file_name=transcription_file, ) # Download audio file - audio_file = dir / job.audio_file_name + audio_file = dir / job.audio_file download_blob( bucket_name=FILES_BUCKET, - source_blob_name=f"{job.user_id}/{job.audio_file_name}", + source_blob_name=f"{job.user_id}/{job.audio_file}", destination_file_name=audio_file, ) return transcription_file, audio_file -def clean_annotation(annotation: Annotation, options: DatasetOptions) -> Annotation: - """Cleans the text within an annotation. - - Parameters: - annotation: The annotation to clean. - options: The cleaning options for the dataset. - - Returns: - A new annotation whose transcript has been cleaned. - """ - transcript = clean_text(annotation.transcript, options) - result = copy(annotation) - result.transcript = transcript - return result - - -def generate_training_files( - annotation: Annotation, audio_file: Path, dir: Path = DEFAULT_DIR -) -> Tuple[Path, Path]: - """Generates a transcript and audio file pairing for this annotation. - - If the annotation is timed (has a start and stop time), we return a path - to a new audio file, which is constrained to the given times. Otherwise, - the annotation spans the entire audio path, and so we return this path, - unmodified. - - Parameters: - annotation: The annotation for a given section of audio within the - supplied audio_file. - audio_file: The file which the annotation references. - - Returns: - A tuple containing a transcription and audio file path for the given - annotation. - """ - # Get a unique name prefix based on annotation start time - name = audio_file.stem - if annotation.start_ms is not None: - name = f"{name}_{annotation.start_ms}" - - # Save transcription_file - transcription_file = dir / f"{name}.json" - with open(transcription_file, "w") as f: - json.dump(annotation.to_dict(), f) - - # Save audio file. - # Type ignoring is because is_timed ensures sample_rate, start_ms and stop_ms exist - if annotation.is_timed(): - cut_audio_file = dir / f"{name}.wav" - audio.cut( - audio_path=audio_file, - destination=cut_audio_file, - start_ms=annotation.start_ms, # type: ignore - stop_ms=annotation.stop_ms, # type: ignore - ) - audio_file = cut_audio_file - - return transcription_file, audio_file - - def post_processing_hook(job: ProcessingJob) -> None: """Determine if all the files in a dataset have been processed, and if so, updates the document accordingly in firestore. diff --git a/functions/models/__init__.py b/functions/models/__init__.py index 25eace6..d03450a 100644 --- a/functions/models/__init__.py +++ b/functions/models/__init__.py @@ -1,14 +1,8 @@ -from models.annotation import Annotation -from models.dataset import Dataset, DatasetOptions, ElanOptions, ProcessingJob -from models.elan_tier_selector import TierSelector +from models.dataset import CloudDataset, ProcessingJob from models.model import Model __all__ = [ - "Annotation", - "Dataset", - "DatasetOptions", - "ElanOptions", + "CloudDataset", "ProcessingJob", - "TierSelector", "Model", ] diff --git a/functions/models/annotation.py b/functions/models/annotation.py deleted file mode 100644 index 9936ba5..0000000 --- a/functions/models/annotation.py +++ /dev/null @@ -1,41 +0,0 @@ -from copy import copy -from dataclasses import dataclass -from typing import Any, Dict, Optional - - -@dataclass -class Annotation: - """A class which represents a section of speech for a given audio file and - sample rate. If start_ms and end_ms aren't specified, it is assumed that the - Annotation spans the entire audio file. - """ - - audio_file_name: str - transcript: str - speaker_id: Optional[str] = None # Currently unused - start_ms: Optional[int] = None - stop_ms: Optional[int] = None - - def is_timed(self) -> bool: - """Returns true iff the annotation exists between a start and stop time for - the given recording. - """ - return self.start_ms is not None and self.stop_ms is not None - - def to_dict(self) -> Dict[str, Any]: - """Converts an annotation to a serializable dictionary""" - return dict(self.__dict__) - - @classmethod - def from_dict(cls, data: Dict[str, Any]) -> "Annotation": - """Builds an annotation from a serializable dictionary - - Throws an error if the required keys are not found. - """ - return cls( - audio_file_name=data["audio_file_name"], - transcript=data["transcript"], - start_ms=data.get("start_ms"), - stop_ms=data.get("stop_ms"), - speaker_id=data.get("speaker_id"), - ) diff --git a/functions/models/dataset.py b/functions/models/dataset.py index 802345b..4dd0ef8 100644 --- a/functions/models/dataset.py +++ b/functions/models/dataset.py @@ -1,195 +1,76 @@ -from dataclasses import dataclass, field, fields -from pathlib import Path -from typing import Any, Dict, List, Optional, Set +from __future__ import annotations -from models.elan_tier_selector import TierSelector +from dataclasses import dataclass, fields +from typing import Any, Dict, Iterable -TRANSCRIPTION_EXTENSIONS = {".eaf", ".txt"} +from elpis.datasets import Dataset, ProcessingBatch @dataclass -class ElanOptions: - """A class representing options for how to extract utterance information - from an elan file.""" - - selection_mechanism: TierSelector - selection_value: str - - @classmethod - def from_dict(cls, data: Dict[str, str]) -> "ElanOptions": - return cls( - selection_mechanism=TierSelector(data["selection_mechanism"]), - selection_value=data["selection_value"], - ) - - def to_dict(self) -> Dict[str, str]: - result = dict(self.__dict__) - result["selection_mechanism"] = self.selection_mechanism.value - return result - - -@dataclass -class DatasetOptions: - """A class representing processing options for a dataset.""" - - punctuation_to_remove: str = "" - punctuation_to_explode: str = "" - text_to_remove: List[str] = field(default_factory=list) - elan_options: Optional[ElanOptions] = None - - @classmethod - def from_dict(cls, data: Dict[str, Any]) -> "DatasetOptions": - kwargs = { - field.name: data[field.name] - for field in fields(DatasetOptions) - if field.name != "elan_options" - } - - if "elan_options" in data: - elan_options = ElanOptions.from_dict(data["elan_options"]) - else: - elan_options = None - - return cls(elan_options=elan_options, **kwargs) - - def to_dict(self) -> Dict[str, Any]: - result = dict(self.__dict__) - if self.elan_options is not None: - result["elan_options"] = self.elan_options.to_dict() - return result - - -@dataclass -class ProcessingJob: +class ProcessingJob(ProcessingBatch): """A class encapsulating the data needed for an individual processing job""" user_id: str - transcription_file_name: str - audio_file_name: str dataset_name: str - options: DatasetOptions def to_dict(self) -> Dict[str, Any]: - result = dict(self.__dict__) - result["options"] = self.options.to_dict() + result = super().to_dict() + result["user_id"] = self.user_id + result["dataset_name"] = self.dataset_name return result @classmethod - def from_dict(cls, data: Dict[str, Any]) -> "ProcessingJob": - kwargs = { - field.name: data[field.name] - for field in fields(ProcessingJob) - if field.name != "options" - } - options = DatasetOptions.from_dict(data["options"]) - return cls(options=options, **kwargs) + def from_batch(cls, batch: ProcessingBatch, user_id: str, dataset_name: str): + return cls( + user_id=user_id, + dataset_name=dataset_name, + **dict((field.name, getattr(batch, field.name)) for field in fields(batch)), + ) + + @classmethod + def from_dict(cls, data: Dict[str, Any]) -> ProcessingJob: + batch = super().from_dict(data) + return cls.from_batch( + batch, user_id=data["user_id"], dataset_name=data["dataset_name"] + ) @dataclass -class Dataset: +class CloudDataset(Dataset): """A class representing an unprocessed dataset within firestore.""" - name: str user_id: str - files: List[str] - options: DatasetOptions processed: bool - def is_empty(self) -> bool: - """Returns true iff the dataset contains no files.""" - return len(self.files) == 0 - - def has_elan(self) -> bool: - """Returns true iff any of the files in the dataset is an elan file.""" - return any(map((lambda file_name: file_name.endswith(".eaf")), self.files)) - - def is_valid(self) -> bool: - """Returns true iff this dataset is valid for processing.""" - return ( - not self.is_empty() - and len(self.files) % 2 == 0 - and len(self.mismatched_files()) == 0 - and len(self.colliding_files()) == 0 - ) + def to_jobs(self) -> Iterable[ProcessingJob]: + """Create a list of processing jobs for this cloud dataset.""" - @staticmethod - def corresponding_audio_file(transcript_file: str) -> str: - """Gets the corresponding audio file name for a given transcript file.""" - return Path(transcript_file).stem + ".wav" - - def mismatched_files(self) -> Set[str]: - """Returns the list of transcript file names with no corresponding - audio files and vice versa. - - Corresponding in this case means that for every transcript file with - name x.some_extension, there is a corresponding file x.wav - - Returns: - A list of the mismatched file names. - """ - transcripts_with_audio = set( - filter( - lambda file: Dataset.corresponding_audio_file(file) in self.files, - self._transcript_files(), + def batch_to_job(batch: ProcessingBatch) -> ProcessingJob: + return ProcessingJob.from_batch( + batch, user_id=self.user_id, dataset_name=self.name ) - ) - matched_files = transcripts_with_audio | set( - Dataset.corresponding_audio_file(file) for file in transcripts_with_audio - ) - - return set(self.files).difference(matched_files) - def colliding_files(self) -> Set[str]: - """Returns the list of transcript file names that collide. + return map(batch_to_job, self.to_batches()) - Collide means that two transcript files would be for the same .wav - file. - - Returns: - A list of the colliding file names. - """ - - def would_collide(transcript_file: str) -> bool: - other_files = self._transcript_files().difference({transcript_file}) - other_file_names = map(lambda file: Path(file).stem, other_files) - return Path(transcript_file).stem in other_file_names - - return set(filter(would_collide, self._transcript_files())) - - def _transcript_files(self) -> Set[str]: - """Returns a set of all transcription files within the dataset.""" - return set( - filter( - lambda file: Path(file).suffix in TRANSCRIPTION_EXTENSIONS, self.files - ) + @classmethod + def from_dataset(cls, dataset: Dataset, user_id: str, processed: bool): + return cls( + user_id=user_id, + processed=processed, + **dict( + (field.name, getattr(dataset, field.name)) for field in fields(dataset) + ), ) @classmethod - def from_dict(cls, data: Dict[str, Any]) -> "Dataset": - kwargs = { - field.name: data[field.name] - for field in fields(Dataset) - if field.name != "options" - } - options = DatasetOptions.from_dict(data["options"]) - return cls(options=options, **kwargs) - - def to_batch(self) -> List["ProcessingJob"]: - """Converts a valid dataset to a list of processing jobs, matching - transcript and audio files. - """ - return [ - ProcessingJob( - dataset_name=self.name, - transcription_file_name=transcription_file_name, - audio_file_name=self.corresponding_audio_file(transcription_file_name), - options=self.options, - user_id=self.user_id, - ) - for transcription_file_name in self._transcript_files() - ] + def from_dict(cls, data: Dict[str, Any]) -> CloudDataset: + dataset = Dataset.from_dict(data) + return cls.from_dataset( + dataset, user_id=data["user_id"], processed=data["processed"] + ) def to_dict(self) -> Dict[str, Any]: - result = dict(self.__dict__) - result["options"] = self.options.to_dict() + result = super().to_dict() + result["user_id"] = self.user_id + result["processed"] = self.processed return result diff --git a/functions/models/elan_tier_selector.py b/functions/models/elan_tier_selector.py deleted file mode 100644 index 02c06c5..0000000 --- a/functions/models/elan_tier_selector.py +++ /dev/null @@ -1,9 +0,0 @@ -from enum import Enum - - -class TierSelector(Enum): - """A class representing a method of selecting elan tiers""" - - ORDER = "tier_order" - TYPE = "tier_type" - NAME = "tier_name" diff --git a/functions/poetry.lock b/functions/poetry.lock index 1f0ac1c..ba7360c 100644 --- a/functions/poetry.lock +++ b/functions/poetry.lock @@ -1,20 +1,75 @@ +[[package]] +name = "aiohttp" +version = "3.8.3" +description = "Async http client/server framework (asyncio)" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +aiosignal = ">=1.1.2" +async-timeout = ">=4.0.0a3,<5.0" +attrs = ">=17.3.0" +charset-normalizer = ">=2.0,<3.0" +frozenlist = ">=1.1.1" +multidict = ">=4.5,<7.0" +yarl = ">=1.0,<2.0" + +[package.extras] +speedups = ["Brotli", "aiodns", "cchardet"] + +[[package]] +name = "aiosignal" +version = "1.3.1" +description = "aiosignal: a list of registered asynchronous callbacks" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +frozenlist = ">=1.1.0" + +[[package]] +name = "appdirs" +version = "1.4.4" +description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "async-timeout" +version = "4.0.2" +description = "Timeout context manager for asyncio programs" +category = "main" +optional = false +python-versions = ">=3.6" + [[package]] name = "attrs" version = "22.1.0" description = "Classes Without Boilerplate" -category = "dev" +category = "main" optional = false python-versions = ">=3.5" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] -docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"] +dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"] +docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] +tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"] +tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] + +[[package]] +name = "audioread" +version = "3.0.0" +description = "multi-library, cross-platform audio decoding" +category = "main" +optional = false +python-versions = ">=3.6" [[package]] name = "cachecontrol" -version = "0.12.12" +version = "0.12.11" description = "httplib2 caching for requests" category = "main" optional = false @@ -25,7 +80,7 @@ msgpack = ">=0.5.2" requests = "*" [package.extras] -filecache = ["filelock (>=3.8.0)"] +filecache = ["lockfile (>=0.9)"] redis = ["redis (>=2.10.5)"] [[package]] @@ -38,12 +93,23 @@ python-versions = "~=3.7" [[package]] name = "certifi" -version = "2022.9.14" +version = "2022.9.24" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false python-versions = ">=3.6" +[[package]] +name = "cffi" +version = "1.15.1" +description = "Foreign Function Interface for Python calling C code." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +pycparser = "*" + [[package]] name = "charset-normalizer" version = "2.1.1" @@ -53,7 +119,7 @@ optional = false python-versions = ">=3.6.0" [package.extras] -unicode_backport = ["unicodedata2"] +unicode-backport = ["unicodedata2"] [[package]] name = "click" @@ -68,7 +134,7 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""} [[package]] name = "cloudevents" -version = "1.6.1" +version = "1.7.1" description = "" category = "main" optional = false @@ -78,15 +144,61 @@ python-versions = "*" deprecation = ">=2.0,<3.0" [package.extras] -pydantic = ["pydantic (>=1.0.0)", "pydantic (>=1.0.0)"] +pydantic = ["pydantic (>=1.0.0,<1.9.0)", "pydantic (>=1.0.0,<2.0)"] [[package]] name = "colorama" -version = "0.4.5" +version = "0.4.6" description = "Cross-platform colored terminal text." category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" + +[[package]] +name = "datasets" +version = "2.7.1" +description = "HuggingFace community-driven open-source library of datasets" +category = "main" +optional = false +python-versions = ">=3.7.0" + +[package.dependencies] +aiohttp = "*" +dill = "<0.3.7" +fsspec = {version = ">=2021.11.1", extras = ["http"]} +huggingface-hub = ">=0.2.0,<1.0.0" +multiprocess = "*" +numpy = ">=1.17" +packaging = "*" +pandas = "*" +pyarrow = ">=6.0.0" +pyyaml = ">=5.1" +requests = ">=2.19.0" +responses = "<0.19" +tqdm = ">=4.62.1" +xxhash = "*" + +[package.extras] +apache-beam = ["apache-beam (>=2.26.0)"] +audio = ["librosa"] +benchmarks = ["numpy (==1.18.5)", "tensorflow (==2.3.0)", "torch (==1.7.1)", "transformers (==3.0.2)"] +dev = ["Pillow (>=6.2.1)", "Werkzeug (>=1.0.1)", "absl-py", "aiobotocore (>=2.0.1)", "apache-beam (>=2.26.0)", "bert-score (>=0.3.6)", "black (>=22.0,<23.0)", "boto3 (>=1.19.8)", "botocore (>=1.22.8)", "elasticsearch (<8.0.0)", "faiss-cpu (>=1.6.4)", "flake8 (>=3.8.3)", "fsspec[s3]", "isort (>=5.0.0)", "jiwer", "langdetect", "librosa", "lz4", "mauve-text", "moto[s3,server] (==2.0.4)", "nltk", "py7zr", "pytest", "pytest-datadir", "pytest-xdist", "pyyaml (>=5.3.1)", "rarfile (>=4.0)", "requests-file (>=1.5.1)", "rouge-score", "s3fs (>=2021.11.1)", "sacrebleu", "sacremoses", "scikit-learn", "scipy", "sentencepiece", "seqeval", "six (>=1.15.0,<1.16.0)", "soundfile", "spacy (>=3.0.0)", "sqlalchemy", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "tensorflow-macos", "texttable (>=1.6.3)", "tldextract", "tldextract (>=3.1.0)", "toml (>=0.10.1)", "torch", "torchaudio (<0.12.0)", "transformers", "typer (<0.5.0)", "zstandard"] +docs = ["s3fs"] +quality = ["black (>=22.0,<23.0)", "flake8 (>=3.8.3)", "isort (>=5.0.0)", "pyyaml (>=5.3.1)"] +s3 = ["boto3", "botocore", "fsspec", "s3fs"] +tensorflow = ["tensorflow (>=2.2.0,!=2.6.0,!=2.6.1)", "tensorflow-macos"] +tensorflow-gpu = ["tensorflow-gpu (>=2.2.0,!=2.6.0,!=2.6.1)"] +tests = ["Pillow (>=6.2.1)", "Werkzeug (>=1.0.1)", "absl-py", "aiobotocore (>=2.0.1)", "apache-beam (>=2.26.0)", "bert-score (>=0.3.6)", "boto3 (>=1.19.8)", "botocore (>=1.22.8)", "elasticsearch (<8.0.0)", "faiss-cpu (>=1.6.4)", "fsspec[s3]", "jiwer", "langdetect", "librosa", "lz4", "mauve-text", "moto[s3,server] (==2.0.4)", "nltk", "py7zr", "pytest", "pytest-datadir", "pytest-xdist", "rarfile (>=4.0)", "requests-file (>=1.5.1)", "rouge-score", "s3fs (>=2021.11.1)", "sacrebleu", "sacremoses", "scikit-learn", "scipy", "sentencepiece", "seqeval", "six (>=1.15.0,<1.16.0)", "soundfile", "spacy (>=3.0.0)", "sqlalchemy", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "tensorflow-macos", "texttable (>=1.6.3)", "tldextract", "tldextract (>=3.1.0)", "toml (>=0.10.1)", "torch", "torchaudio (<0.12.0)", "transformers", "typer (<0.5.0)", "zstandard"] +torch = ["torch"] +vision = ["Pillow (>=6.2.1)"] + +[[package]] +name = "decorator" +version = "5.1.1" +description = "Decorators for Humans" +category = "main" +optional = false +python-versions = ">=3.5" [[package]] name = "deprecation" @@ -99,9 +211,60 @@ python-versions = "*" [package.dependencies] packaging = "*" +[[package]] +name = "dill" +version = "0.3.6" +description = "serialize all of python" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.extras] +graph = ["objgraph (>=1.7.2)"] + +[[package]] +name = "elpis" +version = "0.1.5" +description = "A library to perform automatic speech recognition with huggingface transformers." +category = "main" +optional = false +python-versions = ">=3.10,<4.0" + +[package.dependencies] +datasets = ">=2.6.1,<3.0.0" +librosa = ">=0.9.2,<0.10.0" +loguru = ">=0.6.0,<0.7.0" +pedalboard = ">=0.6.2,<0.7.0" +pympi-ling = ">=1.70.2,<2.0.0" +torch = ">=1.12.1,<2.0.0" +transformers = ">=4.23.1,<5.0.0" + +[[package]] +name = "exceptiongroup" +version = "1.0.4" +description = "Backport of PEP 654 (exception groups)" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.extras] +test = ["pytest (>=6)"] + +[[package]] +name = "filelock" +version = "3.8.2" +description = "A platform independent file lock." +category = "main" +optional = false +python-versions = ">=3.7" + +[package.extras] +docs = ["furo (>=2022.9.29)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.5)"] +testing = ["covdefaults (>=2.2.2)", "coverage (>=6.5)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-timeout (>=2.1)"] + [[package]] name = "firebase-admin" -version = "5.3.0" +version = "5.4.0" description = "Firebase Admin Python SDK" category = "main" optional = false @@ -129,8 +292,51 @@ Jinja2 = ">=3.0" Werkzeug = ">=2.0" [package.extras] -dotenv = ["python-dotenv"] async = ["asgiref (>=3.2)"] +dotenv = ["python-dotenv"] + +[[package]] +name = "frozenlist" +version = "1.3.3" +description = "A list-like structure which implements collections.abc.MutableSequence" +category = "main" +optional = false +python-versions = ">=3.7" + +[[package]] +name = "fsspec" +version = "2022.11.0" +description = "File-system specification" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +aiohttp = {version = "<4.0.0a0 || >4.0.0a0,<4.0.0a1 || >4.0.0a1", optional = true, markers = "extra == \"http\""} +requests = {version = "*", optional = true, markers = "extra == \"http\""} + +[package.extras] +abfs = ["adlfs"] +adl = ["adlfs"] +arrow = ["pyarrow (>=1)"] +dask = ["dask", "distributed"] +dropbox = ["dropbox", "dropboxdrivefs", "requests"] +entrypoints = ["importlib-metadata"] +fuse = ["fusepy"] +gcs = ["gcsfs"] +git = ["pygit2"] +github = ["requests"] +gs = ["gcsfs"] +gui = ["panel"] +hdfs = ["pyarrow (>=1)"] +http = ["aiohttp (!=4.0.0a0,!=4.0.0a1)", "requests"] +libarchive = ["libarchive-c"] +oci = ["ocifs"] +s3 = ["s3fs"] +sftp = ["paramiko"] +smb = ["smbprotocol"] +ssh = ["paramiko"] +tqdm = ["tqdm"] [[package]] name = "functions-framework" @@ -149,28 +355,34 @@ watchdog = ">=1.0.0,<2.0.0" [[package]] name = "google-api-core" -version = "2.10.1" +version = "2.11.0" description = "Google API client core library" category = "main" optional = false python-versions = ">=3.7" [package.dependencies] -google-auth = ">=1.25.0,<3.0dev" +google-auth = ">=2.14.1,<3.0dev" googleapis-common-protos = ">=1.56.2,<2.0dev" -grpcio = {version = ">=1.33.2,<2.0dev", optional = true, markers = "extra == \"grpc\""} -grpcio-status = {version = ">=1.33.2,<2.0dev", optional = true, markers = "extra == \"grpc\""} -protobuf = ">=3.20.1,<5.0.0dev" +grpcio = [ + {version = ">=1.33.2,<2.0dev", optional = true, markers = "extra == \"grpc\""}, + {version = ">=1.49.1,<2.0dev", optional = true, markers = "python_version >= \"3.11\""}, +] +grpcio-status = [ + {version = ">=1.33.2,<2.0dev", optional = true, markers = "extra == \"grpc\""}, + {version = ">=1.49.1,<2.0dev", optional = true, markers = "python_version >= \"3.11\""}, +] +protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.0 || >4.21.0,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0dev" requests = ">=2.18.0,<3.0.0dev" [package.extras] -grpc = ["grpcio (>=1.33.2,<2.0dev)", "grpcio-status (>=1.33.2,<2.0dev)"] +grpc = ["grpcio (>=1.33.2,<2.0dev)", "grpcio (>=1.49.1,<2.0dev)", "grpcio-status (>=1.33.2,<2.0dev)", "grpcio-status (>=1.49.1,<2.0dev)"] grpcgcp = ["grpcio-gcp (>=0.2.2,<1.0dev)"] grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0dev)"] [[package]] name = "google-api-python-client" -version = "2.61.0" +version = "2.68.0" description = "Google API Client Library for Python" category = "main" optional = false @@ -185,7 +397,7 @@ uritemplate = ">=3.0.1,<5" [[package]] name = "google-auth" -version = "2.11.0" +version = "2.15.0" description = "Google Authentication Library" category = "main" optional = false @@ -198,9 +410,9 @@ rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""} six = ">=1.9.0" [package.extras] -aiohttp = ["requests (>=2.20.0,<3.0.0dev)", "aiohttp (>=3.6.2,<4.0.0dev)"] -enterprise_cert = ["cryptography (==36.0.2)", "pyopenssl (==22.0.0)"] -pyopenssl = ["pyopenssl (>=20.0.0)"] +aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)", "requests (>=2.20.0,<3.0.0dev)"] +enterprise-cert = ["cryptography (==36.0.2)", "pyopenssl (==22.0.0)"] +pyopenssl = ["cryptography (>=38.0.3)", "pyopenssl (>=20.0.0)"] reauth = ["pyu2f (>=0.1.5)"] [[package]] @@ -233,7 +445,7 @@ grpc = ["grpcio (>=1.38.0,<2.0dev)"] [[package]] name = "google-cloud-firestore" -version = "2.6.1" +version = "2.7.2" description = "Google Cloud Firestore API client library" category = "main" optional = false @@ -243,11 +455,11 @@ python-versions = ">=3.7" google-api-core = {version = ">=1.32.0,<2.0.0 || >=2.8.0,<3.0.0dev", extras = ["grpc"]} google-cloud-core = ">=1.4.1,<3.0.0dev" proto-plus = ">=1.22.0,<2.0.0dev" -protobuf = ">=3.19.0,<5.0.0dev" +protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.0 || >4.21.0,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0dev" [[package]] name = "google-cloud-pubsub" -version = "2.13.6" +version = "2.13.11" description = "Google Cloud Pub/Sub API client library" category = "main" optional = false @@ -259,14 +471,14 @@ grpc-google-iam-v1 = ">=0.12.4,<1.0.0dev" grpcio = ">=1.38.1,<2.0dev" grpcio-status = ">=1.16.0" proto-plus = ">=1.22.0,<2.0.0dev" -protobuf = ">=3.19.0,<5.0.0dev" +protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.0 || >4.21.0,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0dev" [package.extras] libcst = ["libcst (>=0.3.10)"] [[package]] name = "google-cloud-storage" -version = "2.5.0" +version = "2.6.0" description = "Google Cloud Storage API client library" category = "main" optional = false @@ -295,11 +507,11 @@ testing = ["pytest"] [[package]] name = "google-resumable-media" -version = "2.3.3" +version = "2.4.0" description = "Utilities for Google Media Downloads and Resumable Uploads" category = "main" optional = false -python-versions = ">= 3.6" +python-versions = ">= 3.7" [package.dependencies] google-crc32c = ">=1.0,<2.0dev" @@ -310,18 +522,18 @@ requests = ["requests (>=2.18.0,<3.0.0dev)"] [[package]] name = "googleapis-common-protos" -version = "1.56.4" +version = "1.57.0" description = "Common protobufs used in Google APIs" category = "main" optional = false python-versions = ">=3.7" [package.dependencies] -grpcio = {version = ">=1.0.0,<2.0.0dev", optional = true, markers = "extra == \"grpc\""} -protobuf = ">=3.15.0,<5.0.0dev" +grpcio = {version = ">=1.44.0,<2.0.0dev", optional = true, markers = "extra == \"grpc\""} +protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0dev" [package.extras] -grpc = ["grpcio (>=1.0.0,<2.0.0dev)"] +grpc = ["grpcio (>=1.44.0,<2.0.0dev)"] [[package]] name = "grpc-google-iam-v1" @@ -337,21 +549,18 @@ grpcio = ">=1.0.0,<2.0.0dev" [[package]] name = "grpcio" -version = "1.49.0" +version = "1.51.1" description = "HTTP/2-based RPC framework" category = "main" optional = false python-versions = ">=3.7" -[package.dependencies] -six = ">=1.5.2" - [package.extras] -protobuf = ["grpcio-tools (>=1.49.0)"] +protobuf = ["grpcio-tools (>=1.51.1)"] [[package]] name = "grpcio-status" -version = "1.49.0" +version = "1.51.1" description = "Status proto mapping for gRPC" category = "main" optional = false @@ -359,8 +568,8 @@ python-versions = ">=3.6" [package.dependencies] googleapis-common-protos = ">=1.5.5" -grpcio = ">=1.49.0" -protobuf = ">=4.21.3" +grpcio = ">=1.51.1" +protobuf = ">=4.21.6" [[package]] name = "gunicorn" @@ -370,6 +579,9 @@ category = "main" optional = false python-versions = ">=3.5" +[package.dependencies] +setuptools = ">=3.0" + [package.extras] eventlet = ["eventlet (>=0.24.1)"] gevent = ["gevent (>=1.4.0)"] @@ -378,7 +590,7 @@ tornado = ["tornado (>=0.2)"] [[package]] name = "httplib2" -version = "0.20.4" +version = "0.21.0" description = "A comprehensive HTTP client library." category = "main" optional = false @@ -387,6 +599,33 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.dependencies] pyparsing = {version = ">=2.4.2,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.0.2 || >3.0.2,<3.0.3 || >3.0.3,<4", markers = "python_version > \"3.0\""} +[[package]] +name = "huggingface-hub" +version = "0.11.1" +description = "Client library to download and publish models, datasets and other repos on the huggingface.co hub" +category = "main" +optional = false +python-versions = ">=3.7.0" + +[package.dependencies] +filelock = "*" +packaging = ">=20.9" +pyyaml = ">=5.1" +requests = "*" +tqdm = "*" +typing-extensions = ">=3.7.4.3" + +[package.extras] +all = ["InquirerPy (==0.3.4)", "Jinja2", "black (==22.3)", "flake8 (>=3.8.3)", "flake8-bugbear", "isort (>=5.5.4)", "jedi", "mypy (==0.982)", "pytest", "pytest-cov", "pytest-env", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3"] +cli = ["InquirerPy (==0.3.4)"] +dev = ["InquirerPy (==0.3.4)", "Jinja2", "black (==22.3)", "flake8 (>=3.8.3)", "flake8-bugbear", "isort (>=5.5.4)", "jedi", "mypy (==0.982)", "pytest", "pytest-cov", "pytest-env", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3"] +fastai = ["fastai (>=2.4)", "fastcore (>=1.3.27)", "toml"] +quality = ["black (==22.3)", "flake8 (>=3.8.3)", "flake8-bugbear", "isort (>=5.5.4)", "mypy (==0.982)"] +tensorflow = ["graphviz", "pydot", "tensorflow"] +testing = ["InquirerPy (==0.3.4)", "Jinja2", "isort (>=5.5.4)", "jedi", "pytest", "pytest-cov", "pytest-env", "soundfile"] +torch = ["torch"] +typing = ["types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3"] + [[package]] name = "idna" version = "3.4" @@ -425,6 +664,48 @@ MarkupSafe = ">=2.0" [package.extras] i18n = ["Babel (>=2.7)"] +[[package]] +name = "joblib" +version = "1.2.0" +description = "Lightweight pipelining with Python functions" +category = "main" +optional = false +python-versions = ">=3.7" + +[[package]] +name = "librosa" +version = "0.9.2" +description = "Python module for audio and music processing" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +audioread = ">=2.1.9" +decorator = ">=4.0.10" +joblib = ">=0.14" +numba = ">=0.45.1" +numpy = ">=1.17.0" +packaging = ">=20.0" +pooch = ">=1.0" +resampy = ">=0.2.2" +scikit-learn = ">=0.19.1" +scipy = ">=1.2.0" +soundfile = ">=0.10.2" + +[package.extras] +display = ["matplotlib (>=3.3.0)"] +docs = ["ipython (>=7.0)", "matplotlib (>=3.3.0)", "mir-eval (>=0.5)", "numba (<0.50)", "numpydoc", "presets", "sphinx (!=1.3.1)", "sphinx-gallery (>=0.7)", "sphinx-multiversion (>=0.2.3)", "sphinx-rtd-theme (>=1.0.0,<2.0.0)", "sphinxcontrib-svg2pdfconverter"] +tests = ["contextlib2", "matplotlib (>=3.3.0)", "pytest", "pytest-cov", "pytest-mpl", "samplerate", "soxr"] + +[[package]] +name = "llvmlite" +version = "0.39.1" +description = "lightweight wrapper around basic LLVM functionality" +category = "main" +optional = false +python-versions = ">=3.7" + [[package]] name = "loguru" version = "0.6.0" @@ -438,7 +719,7 @@ colorama = {version = ">=0.3.4", markers = "sys_platform == \"win32\""} win32-setctime = {version = ">=1.0.0", markers = "sys_platform == \"win32\""} [package.extras] -dev = ["sphinx-rtd-theme (>=0.4.3)", "sphinx-autobuild (>=0.7.1)", "Sphinx (>=4.1.1)", "isort (>=5.1.1)", "black (>=19.10b0)", "pytest-cov (>=2.7.1)", "pytest (>=4.6.2)", "tox (>=3.9.0)", "flake8 (>=3.7.7)", "docutils (==0.16)", "colorama (>=0.3.4)"] +dev = ["Sphinx (>=4.1.1)", "black (>=19.10b0)", "colorama (>=0.3.4)", "docutils (==0.16)", "flake8 (>=3.7.7)", "isort (>=5.1.1)", "pytest (>=4.6.2)", "pytest-cov (>=2.7.1)", "sphinx-autobuild (>=0.7.1)", "sphinx-rtd-theme (>=0.4.3)", "tox (>=3.9.0)"] [[package]] name = "markupsafe" @@ -456,6 +737,25 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "multidict" +version = "6.0.3" +description = "multidict implementation" +category = "main" +optional = false +python-versions = ">=3.7" + +[[package]] +name = "multiprocess" +version = "0.70.14" +description = "better multiprocessing and multithreading in python" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +dill = ">=0.3.6" + [[package]] name = "nodeenv" version = "1.7.0" @@ -464,9 +764,25 @@ category = "dev" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*" +[package.dependencies] +setuptools = "*" + +[[package]] +name = "numba" +version = "0.56.4" +description = "compiling Python code using LLVM" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +llvmlite = ">=0.39.0dev0,<0.40" +numpy = ">=1.18,<1.24" +setuptools = "*" + [[package]] name = "numpy" -version = "1.23.3" +version = "1.23.5" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false @@ -483,9 +799,28 @@ python-versions = ">=3.6" [package.dependencies] pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" +[[package]] +name = "pandas" +version = "1.5.2" +description = "Powerful data structures for data analysis, time series, and statistics" +category = "main" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +numpy = [ + {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, + {version = ">=1.23.2", markers = "python_version >= \"3.11\""}, +] +python-dateutil = ">=2.8.1" +pytz = ">=2020.1" + +[package.extras] +test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] + [[package]] name = "pedalboard" -version = "0.6.2" +version = "0.6.7" description = "A Python library for adding effects to audio." category = "main" optional = false @@ -496,14 +831,33 @@ numpy = "*" [[package]] name = "pluggy" -version = "0.13.1" +version = "1.0.0" description = "plugin and hook calling mechanisms for python" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [package.extras] dev = ["pre-commit", "tox"] +testing = ["pytest", "pytest-benchmark"] + +[[package]] +name = "pooch" +version = "1.6.0" +description = "\"Pooch manages your Python library's sample data files: it automatically downloads and stores them in a local directory, with support for versioning and corruption checks.\"" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +appdirs = ">=1.3.0" +packaging = ">=20.0" +requests = ">=2.19.0" + +[package.extras] +progress = ["tqdm (>=4.41.0,<5.0.0)"] +sftp = ["paramiko (>=2.7.0)"] +xxhash = ["xxhash (>=1.4.3)"] [[package]] name = "proto-plus" @@ -521,19 +875,22 @@ testing = ["google-api-core[grpc] (>=1.31.5)"] [[package]] name = "protobuf" -version = "4.21.6" +version = "4.21.10" description = "" category = "main" optional = false python-versions = ">=3.7" [[package]] -name = "py" -version = "1.11.0" -description = "library with cross-python path, ini-parsing, io, code, log facilities" -category = "dev" +name = "pyarrow" +version = "10.0.1" +description = "Python library for Apache Arrow" +category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.7" + +[package.dependencies] +numpy = ">=1.16.6" [[package]] name = "pyasn1" @@ -554,9 +911,17 @@ python-versions = "*" [package.dependencies] pyasn1 = ">=0.4.6,<0.5.0" +[[package]] +name = "pycparser" +version = "2.21" +description = "C parser in Python" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + [[package]] name = "pyhumps" -version = "3.7.3" +version = "3.8.0" description = "🐫 Convert strings (and dictionary keys) between snake case, camel case and pascal case in Python. Inspired by Humps for Node" category = "main" optional = false @@ -571,7 +936,7 @@ optional = false python-versions = "*" [package.extras] -test = ["pytest (>=5)", "pytest-mock", "pytest-cov", "coverage (>=4.2)", "lxml"] +test = ["coverage (>=4.2)", "lxml", "pytest (>=5)", "pytest-cov", "pytest-mock"] [[package]] name = "pyparsing" @@ -582,11 +947,11 @@ optional = false python-versions = ">=3.6.8" [package.extras] -diagrams = ["railroad-diagrams", "jinja2"] +diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pyright" -version = "1.1.271" +version = "1.1.282" description = "Command line wrapper for pyright" category = "dev" optional = false @@ -601,7 +966,7 @@ dev = ["twine (>=3.4.1)"] [[package]] name = "pytest" -version = "7.1.3" +version = "7.2.0" description = "pytest: simple powerful testing with Python" category = "dev" optional = false @@ -610,18 +975,18 @@ python-versions = ">=3.7" [package.dependencies] attrs = ">=19.2.0" colorama = {version = "*", markers = "sys_platform == \"win32\""} +exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""} iniconfig = "*" packaging = "*" pluggy = ">=0.12,<2.0" -py = ">=1.8.2" -tomli = ">=1.0.0" +tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""} [package.extras] testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"] [[package]] name = "pytest-mock" -version = "3.9.0" +version = "3.10.0" description = "Thin-wrapper around the mock package for easier use with pytest" category = "dev" optional = false @@ -631,7 +996,42 @@ python-versions = ">=3.7" pytest = ">=5.0" [package.extras] -dev = ["pre-commit", "tox", "pytest-asyncio"] +dev = ["pre-commit", "pytest-asyncio", "tox"] + +[[package]] +name = "python-dateutil" +version = "2.8.2" +description = "Extensions to the standard Python datetime module" +category = "main" +optional = false +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" + +[package.dependencies] +six = ">=1.5" + +[[package]] +name = "pytz" +version = "2022.6" +description = "World timezone definitions, modern and historical" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "pyyaml" +version = "6.0" +description = "YAML parser and emitter for Python" +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "regex" +version = "2022.10.31" +description = "Alternative regular expression module, to replace re." +category = "main" +optional = false +python-versions = ">=3.6" [[package]] name = "requests" @@ -649,7 +1049,39 @@ urllib3 = ">=1.21.1,<1.27" [package.extras] socks = ["PySocks (>=1.5.6,!=1.5.7)"] -use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"] +use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] + +[[package]] +name = "resampy" +version = "0.4.2" +description = "Efficient signal resampling" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +numba = ">=0.53" +numpy = ">=1.17" + +[package.extras] +design = ["optuna (>=2.10.0)"] +docs = ["numpydoc", "sphinx (!=1.3.1)"] +tests = ["pytest (<8)", "pytest-cov", "scipy (>=1.0)"] + +[[package]] +name = "responses" +version = "0.18.0" +description = "A utility library for mocking out the `requests` Python library." +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +requests = ">=2.0,<3.0" +urllib3 = ">=1.25.10" + +[package.extras] +tests = ["coverage (>=6.0.0)", "flake8", "mypy", "pytest (>=4.6)", "pytest-cov", "pytest-localserver", "types-mock", "types-requests"] [[package]] name = "rsa" @@ -662,6 +1094,54 @@ python-versions = ">=3.6,<4" [package.dependencies] pyasn1 = ">=0.1.3" +[[package]] +name = "scikit-learn" +version = "1.1.3" +description = "A set of python modules for machine learning and data mining" +category = "main" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +joblib = ">=1.0.0" +numpy = ">=1.17.3" +scipy = ">=1.3.2" +threadpoolctl = ">=2.0.0" + +[package.extras] +benchmark = ["matplotlib (>=3.1.2)", "memory-profiler (>=0.57.0)", "pandas (>=1.0.5)"] +docs = ["Pillow (>=7.1.2)", "matplotlib (>=3.1.2)", "memory-profiler (>=0.57.0)", "numpydoc (>=1.2.0)", "pandas (>=1.0.5)", "scikit-image (>=0.16.2)", "seaborn (>=0.9.0)", "sphinx (>=4.0.1)", "sphinx-gallery (>=0.7.0)", "sphinx-prompt (>=1.3.0)", "sphinxext-opengraph (>=0.4.2)"] +examples = ["matplotlib (>=3.1.2)", "pandas (>=1.0.5)", "scikit-image (>=0.16.2)", "seaborn (>=0.9.0)"] +tests = ["black (>=22.3.0)", "flake8 (>=3.8.2)", "matplotlib (>=3.1.2)", "mypy (>=0.961)", "numpydoc (>=1.2.0)", "pandas (>=1.0.5)", "pyamg (>=4.0.0)", "pytest (>=5.0.1)", "pytest-cov (>=2.9.0)", "scikit-image (>=0.16.2)"] + +[[package]] +name = "scipy" +version = "1.9.3" +description = "Fundamental algorithms for scientific computing in Python" +category = "main" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +numpy = ">=1.18.5,<1.26.0" + +[package.extras] +dev = ["flake8", "mypy", "pycodestyle", "typing_extensions"] +doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-panels (>=0.5.2)", "sphinx-tabs"] +test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] + +[[package]] +name = "setuptools" +version = "60.3.1" +description = "Easily download, build, install, upgrade, and uninstall Python packages" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.extras] +docs = ["furo", "jaraco.packaging (>=8.2)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx", "sphinx-inline-tabs", "sphinxcontrib-towncrier"] +testing = ["flake8-2020", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mock", "paver", "pip (>=19.1)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-flake8", "pytest-mypy", "pytest-virtualenv (>=1.2.7)", "pytest-xdist", "sphinx (>=4.3.2)", "virtualenv (>=13.0.0)", "wheel"] + [[package]] name = "six" version = "1.16.0" @@ -670,6 +1150,41 @@ category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" +[[package]] +name = "soundfile" +version = "0.11.0" +description = "An audio library based on libsndfile, CFFI and NumPy" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +cffi = ">=1.0" + +[package.extras] +numpy = ["numpy"] + +[[package]] +name = "threadpoolctl" +version = "3.1.0" +description = "threadpoolctl" +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "tokenizers" +version = "0.13.2" +description = "Fast and Customizable Tokenizers" +category = "main" +optional = false +python-versions = "*" + +[package.extras] +dev = ["black (==22.3)", "datasets", "numpy", "pytest", "requests"] +docs = ["setuptools-rust", "sphinx", "sphinx-rtd-theme"] +testing = ["black (==22.3)", "datasets", "numpy", "pytest", "requests"] + [[package]] name = "tomli" version = "2.0.1" @@ -678,6 +1193,104 @@ category = "dev" optional = false python-versions = ">=3.7" +[[package]] +name = "torch" +version = "1.12.1" +description = "Tensors and Dynamic neural networks in Python with strong GPU acceleration" +category = "main" +optional = false +python-versions = ">=3.7.0" + +[package.dependencies] +typing-extensions = "*" + +[[package]] +name = "tqdm" +version = "4.64.1" +description = "Fast, Extensible Progress Meter" +category = "main" +optional = false +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" + +[package.dependencies] +colorama = {version = "*", markers = "platform_system == \"Windows\""} + +[package.extras] +dev = ["py-make (>=0.1.0)", "twine", "wheel"] +notebook = ["ipywidgets (>=6)"] +slack = ["slack-sdk"] +telegram = ["requests"] + +[[package]] +name = "transformers" +version = "4.25.1" +description = "State-of-the-art Machine Learning for JAX, PyTorch and TensorFlow" +category = "main" +optional = false +python-versions = ">=3.7.0" + +[package.dependencies] +filelock = "*" +huggingface-hub = ">=0.10.0,<1.0" +numpy = ">=1.17" +packaging = ">=20.0" +pyyaml = ">=5.1" +regex = "!=2019.12.17" +requests = "*" +tokenizers = ">=0.11.1,<0.11.3 || >0.11.3,<0.14" +tqdm = ">=4.27" + +[package.extras] +accelerate = ["accelerate (>=0.10.0)"] +all = ["Pillow", "accelerate (>=0.10.0)", "codecarbon (==1.2.0)", "flax (>=0.4.1)", "jax (>=0.2.8,!=0.3.2,<=0.3.6)", "jaxlib (>=0.1.65,<=0.3.6)", "kenlm", "keras-nlp (>=0.3.1)", "librosa", "onnxconverter-common", "optax (>=0.0.8)", "optuna", "phonemizer", "protobuf (<=3.20.2)", "pyctcdecode (>=0.4.0)", "ray[tune]", "sentencepiece (>=0.1.91,!=0.1.92)", "sigopt", "tensorflow (>=2.4,<2.11)", "tensorflow-text", "tf2onnx", "timm", "tokenizers (>=0.11.1,!=0.11.3,<0.14)", "torch (>=1.7,!=1.12.0)", "torchaudio"] +audio = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)"] +codecarbon = ["codecarbon (==1.2.0)"] +deepspeed = ["accelerate (>=0.10.0)", "deepspeed (>=0.6.5)"] +deepspeed-testing = ["GitPython (<3.1.19)", "accelerate (>=0.10.0)", "beautifulsoup4", "black (==22.3)", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "deepspeed (>=0.6.5)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "hf-doc-builder (>=0.3.0)", "nltk", "optuna", "parameterized", "protobuf (<=3.20.2)", "psutil", "pytest", "pytest-timeout", "pytest-xdist", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "safetensors (>=0.2.1)", "timeout-decorator"] +dev = ["GitPython (<3.1.19)", "Pillow", "accelerate (>=0.10.0)", "beautifulsoup4", "black (==22.3)", "codecarbon (==1.2.0)", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "flake8 (>=3.8.3)", "flax (>=0.4.1)", "fugashi (>=1.0)", "hf-doc-builder", "hf-doc-builder (>=0.3.0)", "ipadic (>=1.0.0,<2.0)", "isort (>=5.5.4)", "jax 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+1,24 @@ -import json from pathlib import Path from unittest.mock import Mock -from models import Annotation, DatasetOptions, ProcessingJob +from elpis.datasets import CleaningOptions +from elpis.models import ElanOptions, ElanTierSelector +from models import ProcessingJob -from functions.datasets.process_file import ( - clean_annotation, - download_files, - generate_training_files, - has_finished_processing, -) +from functions.datasets.process_file import download_files, has_finished_processing -TEST_ANNOTATION = Annotation(audio_file_name="test.wav", transcript="hi") -TEST_ANNOTATION_TIMED = Annotation( - audio_file_name="test.wav", - transcript="hi", - start_ms=0, - stop_ms=1000, -) +ABUI_DATASET_FILES = ["abui_1.eaf", "abui_1.wav", "abui_2.eaf", "abui_2.wav"] TEST_JOB = ProcessingJob( user_id="1", - transcription_file_name="test.eaf", - audio_file_name="test.wav", - dataset_name="dataset", - options=DatasetOptions(), + dataset_name="Dataset", + transcription_file=Path(ABUI_DATASET_FILES[0]), + audio_file=Path(ABUI_DATASET_FILES[1]), + cleaning_options=CleaningOptions(), + elan_options=ElanOptions(ElanTierSelector.ORDER, "1"), ) -ABUI_DATASET_FILES = ["abui_1.eaf", "abui_1.wav", "abui_2.eaf", "abui_2.wav"] - - def test_download_files(mocker): downloader_mock: Mock = mocker.patch( "functions.datasets.process_file.download_blob" @@ -39,48 +27,8 @@ def test_download_files(mocker): transcript_file, audio_file = download_files(job=TEST_JOB, dir=dir) assert downloader_mock.call_count == 2 - assert transcript_file == dir / TEST_JOB.transcription_file_name - assert audio_file == dir / TEST_JOB.audio_file_name - - -def test_clean_annotation(mocker): - cleaner_mock: Mock = mocker.patch("functions.datasets.process_file.clean_text") - cleaner_mock.return_value = "wow" - - result = clean_annotation(TEST_ANNOTATION, DatasetOptions()) - cleaner_mock.assert_called_once() - assert result.transcript == "wow" - assert TEST_ANNOTATION.transcript == "hi" - - -def test_generate_training_files_with_untimed_annotation(tmp_path: Path, mocker): - cut_mock: Mock = mocker.patch("functions.datasets.process_file.audio.cut") - audio_file = tmp_path / "test.wav" - - transcription, audio = generate_training_files( - TEST_ANNOTATION, audio_file, tmp_path - ) - cut_mock.assert_not_called() - assert transcription == tmp_path / "test.json" - assert audio == audio_file - - with open(transcription) as f: - assert Annotation.from_dict(json.load(f)) == TEST_ANNOTATION - - -def test_generate_training_files_with_timed_annotation(tmp_path: Path, mocker): - cut_mock: Mock = mocker.patch("functions.datasets.process_file.audio.cut") - audio_file = tmp_path / "test.wav" - - transcription, audio = generate_training_files( - TEST_ANNOTATION_TIMED, audio_file, tmp_path - ) - cut_mock.assert_called_once() - assert transcription == tmp_path / f"test_{TEST_ANNOTATION_TIMED.start_ms}.json" - assert audio == tmp_path / f"test_{TEST_ANNOTATION_TIMED.start_ms}.wav" - - with open(transcription) as f: - assert Annotation.from_dict(json.load(f)) == TEST_ANNOTATION_TIMED + assert transcript_file == dir / TEST_JOB.transcription_file + assert audio_file == dir / TEST_JOB.audio_file def test_has_finished_processing(): diff --git a/functions/tests/models/test_annotations.py b/functions/tests/models/test_annotations.py deleted file mode 100644 index f3aa1e1..0000000 --- a/functions/tests/models/test_annotations.py +++ /dev/null @@ -1,45 +0,0 @@ -from models import Annotation -from pytest import raises - -START = 0 -STOP = 1000 -AUDIO_FILE_NAME = "audio" -TRANSCRIPT = "hi" -SPEAKER_ID = "goofy" - -INVALID_ANNOTATION_DATA = {"audio_file_name": AUDIO_FILE_NAME} -UNTIMED_ANNOTATION_DATA = { - "audio_file_name": AUDIO_FILE_NAME, - "transcript": TRANSCRIPT, - "speaker_id": SPEAKER_ID, -} -TIMING_DATA = {"start_ms": START, "stop_ms": STOP} -TIMED_ANNOTATION_DATA = UNTIMED_ANNOTATION_DATA | TIMING_DATA - - -def test_annotation_from_valid_dict(): - annotation = Annotation.from_dict(UNTIMED_ANNOTATION_DATA) - assert annotation.audio_file_name == AUDIO_FILE_NAME - assert annotation.transcript == TRANSCRIPT - - annotation = Annotation.from_dict(TIMED_ANNOTATION_DATA) - assert annotation.start_ms == START - assert annotation.stop_ms == STOP - - -def test_annotation_from_invalid_dict(): - with raises(Exception): - Annotation.from_dict(INVALID_ANNOTATION_DATA) - - -def test_to_dict_round_trip(): - timed_annotation = Annotation.from_dict(TIMED_ANNOTATION_DATA) - assert timed_annotation.to_dict() == TIMED_ANNOTATION_DATA - - -def test_is_timed(): - timed_annotation = Annotation.from_dict(TIMED_ANNOTATION_DATA) - assert timed_annotation.is_timed() - - untimed_annotation = Annotation.from_dict(UNTIMED_ANNOTATION_DATA) - assert not untimed_annotation.is_timed() diff --git a/functions/tests/models/test_dataset.py b/functions/tests/models/test_dataset.py index b2c9662..fab9979 100644 --- a/functions/tests/models/test_dataset.py +++ b/functions/tests/models/test_dataset.py @@ -1,179 +1,38 @@ -from models import Dataset, DatasetOptions, ElanOptions, ProcessingJob, TierSelector -from pytest import raises - -# ====== Elan Options ====== - -VALID_ELAN_OPTIONS_DICT = { - "selection_mechanism": "tier_name", - "selection_value": "test", -} -INVALID_ELAN_OPTIONS_DICT = { - "selection_mechanism": "pier_name", - "selection_value": "jest", -} - - -def test_build_elan_options(): - options = ElanOptions.from_dict(VALID_ELAN_OPTIONS_DICT) - assert options.selection_mechanism == TierSelector.NAME - assert options.selection_value == "test" - - -def test_build_invalid_elan_options_raises_error(): - with raises(ValueError): - ElanOptions.from_dict(INVALID_ELAN_OPTIONS_DICT) - - -def test_serialize_elan_options(): - options = ElanOptions( - selection_mechanism=TierSelector.NAME, selection_value="hello" - ) - result = options.to_dict() - assert result["selection_mechanism"] == "tier_name" - assert result["selection_value"] == "hello" - - -# ====== Dataset Options ====== -VALID_DATASET_OPTIONS_WITHOUT_ELAN_DICT = { - "punctuation_to_remove": ":", - "punctuation_to_explode": ";", - "text_to_remove": [""], -} - -VALID_DATASET_OPTIONS_DICT = VALID_DATASET_OPTIONS_WITHOUT_ELAN_DICT | { - "elan_options": VALID_ELAN_OPTIONS_DICT -} - - -def test_default_dataset_options(): - options = DatasetOptions() - assert options.punctuation_to_remove == "" - assert options.punctuation_to_explode == "" - assert options.text_to_remove == [] - assert options.elan_options is None - - -def test_build_dataset_options_with_elan(): - options = DatasetOptions.from_dict(VALID_DATASET_OPTIONS_DICT) - assert options.punctuation_to_remove == ":" - assert options.punctuation_to_explode == ";" - assert options.text_to_remove == [""] - assert options.elan_options is not None - assert options.elan_options == ElanOptions.from_dict(VALID_ELAN_OPTIONS_DICT) - - -def test_build_dataset_options_without_elan(): - options = DatasetOptions.from_dict(VALID_DATASET_OPTIONS_WITHOUT_ELAN_DICT) - assert options.punctuation_to_remove == ":" - assert options.punctuation_to_explode == ";" - assert options.text_to_remove == [""] - assert options.elan_options is None - - -def test_serialize_dataset_options(): - options = DatasetOptions( - punctuation_to_remove=":", - punctuation_to_explode=";", - text_to_remove=[""], - elan_options=ElanOptions.from_dict(VALID_ELAN_OPTIONS_DICT), - ) - assert options.to_dict() == VALID_DATASET_OPTIONS_DICT +from pathlib import Path +from elpis.datasets import CleaningOptions, Dataset +from elpis.datasets.dataset import ElanOptions +from elpis.models import ElanTierSelector +from models.dataset import CloudDataset, ProcessingJob # ====== Dataset ====== -FILES_WITH_ELAN = ["1.eaf", "1.wav"] -FILES_WITHOUT_ELAN = ["1.txt", "1.wav"] -MISMATCHED_FILES = ["1.eaf", "1.wav", "2.wav", "3.txt"] -COLLIDING_FILES = ["1.eaf", "1.wav", "1.txt"] +FILES_WITH_ELAN = [Path(name) for name in ("1.eaf", "1.wav")] +DATASET = Dataset( + name="dataset", + files=FILES_WITH_ELAN, + cleaning_options=CleaningOptions(), + elan_options=ElanOptions(ElanTierSelector.NAME, "Phrase"), +) -VALID_DATASET_DICT = { - "name": "dataset", - "user_id": "1", - "files": FILES_WITH_ELAN, - "options": VALID_DATASET_OPTIONS_DICT, - "processed": False, -} +CLOUD_DATASET_DICT = {"processed": False, "user_id": "1", **DATASET.to_dict()} -def test_build_dataset(): - dataset = Dataset.from_dict(VALID_DATASET_DICT) - assert dataset.name == "dataset" +def test_build_cloud_dataset(): + dataset = CloudDataset.from_dict(CLOUD_DATASET_DICT) assert dataset.user_id == "1" - assert dataset.files == FILES_WITH_ELAN - assert dataset.options == DatasetOptions.from_dict(VALID_DATASET_OPTIONS_DICT) assert dataset.processed == False -def test_serialize_dataset(): - dataset = Dataset.from_dict(VALID_DATASET_DICT) - assert dataset.to_dict() == VALID_DATASET_DICT - - -def test_dataset_is_empty(): - dataset = Dataset.from_dict(VALID_DATASET_DICT) - assert not dataset.is_empty() - - dataset.files = [] - assert dataset.is_empty() - - -def test_dataset_has_elan(): - dataset = Dataset.from_dict(VALID_DATASET_DICT) - assert dataset.has_elan() - - dataset.files = FILES_WITHOUT_ELAN - assert not dataset.has_elan() - - -def test_dataset_mismatched_files(): - dataset = Dataset.from_dict(VALID_DATASET_DICT) - assert len(dataset.mismatched_files()) == 0 - - dataset.files = MISMATCHED_FILES - assert set(dataset.mismatched_files()) == {"2.wav", "3.txt"} - - -def test_duplicate_files(): - dataset = Dataset.from_dict(VALID_DATASET_DICT) - assert len(dataset.colliding_files()) == 0 - - dataset.files = COLLIDING_FILES - assert set(dataset.colliding_files()) == {"1.eaf", "1.txt"} - - -def test_dataset_batching(): - dataset = Dataset.from_dict(VALID_DATASET_DICT) - batch = dataset.to_batch() - assert len(batch) == 1 - job = batch[0] - assert job.user_id == dataset.user_id - assert job.dataset_name == dataset.name - transcript_file_name, audio_file_name = FILES_WITH_ELAN - assert job.transcription_file_name == transcript_file_name - assert job.audio_file_name == audio_file_name - assert job.options == dataset.options - - -# ====== Processing Job ====== -VALID_JOB_DICT = { - "user_id": VALID_DATASET_DICT["user_id"], - "dataset_name": VALID_DATASET_DICT["name"], - "transcription_file_name": FILES_WITH_ELAN[0], - "audio_file_name": FILES_WITH_ELAN[1], - "options": VALID_DATASET_OPTIONS_DICT, -} +def test_serialize_cloud_dataset(): + dataset = CloudDataset.from_dict(CLOUD_DATASET_DICT) + assert dataset.to_dict() == CLOUD_DATASET_DICT -def test_build_processing_job(): - job = ProcessingJob.from_dict(VALID_JOB_DICT) - assert job.user_id == VALID_DATASET_DICT["user_id"] - assert job.dataset_name == VALID_DATASET_DICT["name"] - assert job.transcription_file_name == FILES_WITH_ELAN[0] - assert job.audio_file_name == FILES_WITH_ELAN[1] - assert job.options == DatasetOptions.from_dict(VALID_DATASET_OPTIONS_DICT) +def test_create_processing_jobs(): + dataset = CloudDataset.from_dict(CLOUD_DATASET_DICT) + def has_correct_attributes(job: ProcessingJob) -> bool: + return job.dataset_name == dataset.name and job.user_id == job.user_id -def test_serialize_processing_job(): - job = ProcessingJob.from_dict(VALID_JOB_DICT) - assert job.to_dict() == VALID_JOB_DICT + assert all(map(has_correct_attributes, dataset.to_jobs())) diff --git a/functions/tests/utils/test_audio.py b/functions/tests/utils/test_audio.py deleted file mode 100644 index c6260cd..0000000 --- a/functions/tests/utils/test_audio.py +++ /dev/null @@ -1,48 +0,0 @@ -import wave -from pathlib import Path - -from loguru import logger -from utils.audio import cut, get_sample_rate, resample - -DATA_DIR = Path(__file__).parent.parent / "data" -TARGET_SAMPLE_RATE = 23_000 - - -def test_cut(tmp_path: Path): - logger.info(f"Test cutting dir: {tmp_path}") - audio = DATA_DIR / "test.wav" - cut_audio = tmp_path / "test.wav" - start_ms = 0 - stop_ms = 1000 - sample_rate = get_sample_rate(audio) - cut( - audio_path=audio, - destination=cut_audio, - start_ms=start_ms, - stop_ms=stop_ms, - ) - - audio_wave = wave.open(str(cut_audio), "rb") - frame_count = audio_wave.getnframes() - audio_wave.close() - - assert frame_count == (stop_ms - start_ms) * sample_rate / 1000 - assert sample_rate == get_sample_rate(cut_audio) - - -def test_resample(tmp_path: Path): - audio = DATA_DIR / "test.wav" - resampled_audio = tmp_path / "test.wav" - resample(audio, resampled_audio, TARGET_SAMPLE_RATE) - assert resampled_audio.exists() - - resampled_audio_wave = wave.open(str(resampled_audio), "rb") - sample_rate = resampled_audio_wave.getframerate() - resampled_audio_wave.close() - - assert sample_rate == TARGET_SAMPLE_RATE - - -def test_get_sample_rate(): - audio = DATA_DIR / "test.wav" - assert get_sample_rate(audio) == 16_000 diff --git a/functions/tests/utils/test_clean_text.py b/functions/tests/utils/test_clean_text.py deleted file mode 100644 index 6f69362..0000000 --- a/functions/tests/utils/test_clean_text.py +++ /dev/null @@ -1,37 +0,0 @@ -from models import DatasetOptions -from utils.clean_text import clean_text, collapse, explode, remove_consecutive_spaces - - -def test_explode(): - text = "I commit;ted arson" - assert explode(text, ";") == "I commit ted arson" - - text = ":::" - assert explode(text, ":") == (" " * len(text)) - - -def test_collapse(): - text = "uwu" - assert collapse(text, "u") == "w" - - text = ";" - assert collapse(text, ";") == "" - - -def test_remove_consecutive_spaces(): - text = "hey there " - assert remove_consecutive_spaces(text) == "hey there " - - -def test_clean_text_with_defaults_leaves_text_unchanged(): - text = "unchanged" - assert clean_text(text, DatasetOptions()) == text - - -def test_clean_text(): - text = "This;is going -to;-;be very inter-esting" - cleaning_options = DatasetOptions( - text_to_remove=["very"], punctuation_to_explode=";", punctuation_to_remove="-" - ) - expected = "This is going to be interesting".lower() - assert clean_text(text, cleaning_options) == expected diff --git a/functions/tests/utils/test_extract_annotations.py b/functions/tests/utils/test_extract_annotations.py deleted file mode 100644 index 42f2da6..0000000 --- a/functions/tests/utils/test_extract_annotations.py +++ /dev/null @@ -1,124 +0,0 @@ -from pathlib import Path -from unittest.mock import Mock - -from models.dataset import ElanOptions -from models.elan_tier_selector import TierSelector -from utils.extract_annotations import ( - extract_annotations, - extract_elan_annotations, - extract_text_annotations, - get_annotations_by_tier_name, - get_annotations_by_tier_order, - get_annotations_by_tier_type, -) - -DATA_DIR = Path(__file__).parent.parent / "data" -ELAN_PATH = DATA_DIR / "test.eaf" - - -def test_extract_annotations_from_text_calls_proper_function(mocker): - path = Path("text.txt") - extract_text_mock: Mock = mocker.patch( - "utils.extract_annotations.extract_text_annotations" - ) - extract_annotations(path) - extract_text_mock.assert_called_once_with(path) - - -def test_extract_annotations_from_elan_without_elan_options(): - path = Path("text.eaf") - annotations = extract_annotations(path) - assert len(annotations) == 0 - - -def test_extract_annotations_from_elan_with_elan_options(mocker): - elan_options = ElanOptions( - selection_value="Phrase", selection_mechanism=TierSelector.NAME - ) - path = Path("text.eaf") - mock: Mock = mocker.patch("utils.extract_annotations.extract_elan_annotations") - - extract_annotations(path, elan_options) - mock.assert_called_once_with( - path, - selection_type=elan_options.selection_mechanism, - selection_data=elan_options.selection_value, - ) - - -def test_extract_annotations_from_unknown_file_format(): - path = Path("text.ipub") - annotations = extract_annotations(path) - assert len(annotations) == 0 - - -def test_extract_text_annotations(tmp_path: Path): - text = "hello" - path = tmp_path / "test.txt" - with open(path, "w") as f: - f.write(text) - - annotations = extract_text_annotations(path) - assert len(annotations) == 1 - annotation = annotations[0] - assert annotation.transcript == text - assert annotation.audio_file_name == path.stem + ".wav" - - -def test_extract_elan_annotations(mocker): - path = Path() - selector = TierSelector.NAME - value = "Phrase" - name_mock: Mock = mocker.patch( - "utils.extract_annotations.get_annotations_by_tier_name" - ) - extract_elan_annotations(path, selector, value) - name_mock.assert_called_once_with(path, value) - - # Linguistic type - selector = TierSelector.TYPE - type_mock: Mock = mocker.patch( - "utils.extract_annotations.get_annotations_by_tier_type" - ) - extract_elan_annotations(path, selector, value) - type_mock.assert_called_once_with(path, value) - - # Tier Order - selector = TierSelector.ORDER - order_mock: Mock = mocker.patch( - "utils.extract_annotations.get_annotations_by_tier_order" - ) - extract_elan_annotations(path, selector, value) - # Default if can't convert value to number - order_mock.assert_called_with(path, 1) - - value = "2" - extract_elan_annotations(path, selector, value) - order_mock.assert_called_with(path, 2) - - -def test_generate_utterances_from_tier_id(): - annotations = get_annotations_by_tier_name(ELAN_PATH, "Phrase") - assert len(annotations) == 2 - assert all(annotation.speaker_id == "SL" for annotation in annotations) - - -def test_missing_linguistic_type(): - annotations = get_annotations_by_tier_type(ELAN_PATH, "missing") - assert len(annotations) == 0 - - -def test_generate_utterances_from_linguistic_type(): - annotations = get_annotations_by_tier_type(ELAN_PATH, "default-lt") - assert len(annotations) == 6 - - -def test_invalid_tier_order(): - annotations = get_annotations_by_tier_order(ELAN_PATH, 69) - assert len(annotations) == 0 - - -def test_generate_utterances_from_tier_order(): - for tier_order in range(1, 4): - annotations = get_annotations_by_tier_order(ELAN_PATH, tier_order) - assert len(annotations) == 2 diff --git a/functions/utils/audio.py b/functions/utils/audio.py deleted file mode 100644 index 286d62d..0000000 --- a/functions/utils/audio.py +++ /dev/null @@ -1,61 +0,0 @@ -from pathlib import Path - -from pedalboard.io import ReadableAudioFile, WriteableAudioFile - - -def get_sample_rate(audio_path: Path) -> int: - """Gets the current sample rate of the given audio file. - - Parameters: - audio_path: The path to the audio file. - - Returns: - The sample rate of the given file. - """ - with ReadableAudioFile(str(audio_path)) as audio_file: - return int(audio_file.samplerate) - - -def resample(audio_path: Path, destination: Path, sample_rate: int) -> None: - """Copies a wav file to the destination, with the given - sample rate. - - Parameters: - audio_path (Path): The path of the file to resample - destination (Path): The destination at which to create the resampled file - sample_rate (int): The sample rate for the resampled audio. - """ - with ReadableAudioFile(str(audio_path)).resampled_to(sample_rate) as audio_file: - data = audio_file.read(audio_file.frames) - num_channels = audio_file.num_channels - - with WriteableAudioFile( - str(destination), samplerate=sample_rate, num_channels=num_channels - ) as destination_file: - destination_file.write(data) - - -def cut(audio_path: Path, destination: Path, start_ms: int, stop_ms: int) -> None: - """Creates a new wav file at the destination, restricted to the given start - and stop times. - - Parameters: - audio_path (Path): The path of the file to resample. - destination (Path): The destination at which to create the resampled file. - start_ms (int): The start time in milliseconds to record from. - stop_ms (int): The stop time in milliseconds to record to. - """ - - with ReadableAudioFile(str(audio_path)) as audio_file: - start = int(start_ms * audio_file.samplerate / 1000) - stop = int(stop_ms * audio_file.samplerate / 1000) - - audio_file.seek(start) - data = audio_file.read(stop - start) - num_channels = audio_file.num_channels - sample_rate = audio_file.samplerate - - with WriteableAudioFile( - str(destination), samplerate=sample_rate, num_channels=num_channels - ) as destination_file: - destination_file.write(data) diff --git a/functions/utils/clean_text.py b/functions/utils/clean_text.py deleted file mode 100644 index 5e3da7e..0000000 --- a/functions/utils/clean_text.py +++ /dev/null @@ -1,66 +0,0 @@ -import re - -from models import DatasetOptions - - -def clean_text(text: str, options: DatasetOptions) -> str: - """Cleans the text based on the supplied options. - - Parameters: - text: The text to clean. - options: The cleaning options. - - Returns: - The cleaned text - """ - words = text.lower().split() - words = filter(lambda word: word not in options.text_to_remove, words) - - if options.punctuation_to_explode != "": - words = map(lambda word: explode(word, options.punctuation_to_explode), words) - - if options.punctuation_to_remove != "": - words = map(lambda word: collapse(word, options.punctuation_to_remove), words) - - result = " ".join(words).strip() - return remove_consecutive_spaces(result) - - -def explode(text: str, pattern: str) -> str: - """Replace occurences of the pattern with spaces within the given text. - - Parameters: - text: The text to modify. - pattern: The pattern of characters to replace with spaces. - - Returns: - The text with instances of the pattern exploded. - """ - pattern = re.escape(pattern) - return re.sub(rf"[{pattern}]", " ", text) - - -def collapse(text: str, pattern: str) -> str: - """Remove occurences of the pattern within the given text. - - Parameters: - text: The text to modify. - pattern: The pattern of characters to remove. - - Returns: - The text with instances of the pattern removed. - """ - pattern = re.escape(pattern) - return re.sub(rf"[{pattern}]", "", text) - - -def remove_consecutive_spaces(text: str) -> str: - """Replace consecutive spaces with a single one in some given text. - - Parameters: - text: The text to modify. - - Returns - The supplied text with conseucutive spaces reduced to one. - """ - return re.sub("[ ]+", " ", text) diff --git a/functions/utils/extract_annotations.py b/functions/utils/extract_annotations.py deleted file mode 100644 index 99b40b9..0000000 --- a/functions/utils/extract_annotations.py +++ /dev/null @@ -1,189 +0,0 @@ -from itertools import chain -from pathlib import Path -from typing import Dict, List, Optional, Tuple - -from loguru import logger -from models import Annotation, TierSelector -from models.dataset import ElanOptions -from pympi.Elan import Eaf - - -def extract_annotations( - transcription_file: Path, elan_options: Optional[ElanOptions] = None -) -> List[Annotation]: - """Extracts annotations from the supplied transcription file. - - If the transcription file is an elan file, elan_options is required. - - Parameters: - transcription_file: The file from which to extract annotations - elan_options: Options to include for determining how to extract annotations - from elan data. - - Returns: - A list of found annotations. - Returns an empty list if there was a problem. - """ - if transcription_file.suffix == ".txt": - return extract_text_annotations(transcription_file) - - if transcription_file.suffix != ".eaf": - logger.error(f"Unrecognised file format: {transcription_file}") - return [] - - if elan_options is None: - logger.error(f"Missing elan options for extraction job.") - return [] - - return extract_elan_annotations( - transcription_file, - selection_type=elan_options.selection_mechanism, - selection_data=elan_options.selection_value, - ) - - -def extract_text_annotations(file: Path) -> List[Annotation]: - """Extract transcription information from a text file. - - Parameters: - file_name: The name of the downloaded file. - - Returns: - A list of utterance information for the given file. - """ - with open(file) as transcription_file: - transcription = transcription_file.read() - - return [ - Annotation( - audio_file_name=file.stem + ".wav", - transcript=transcription, - ) - ] - - -def extract_elan_annotations( - elan_file_path: Path, selection_type: TierSelector, selection_data: str -) -> List[Annotation]: - """Extracts annotations from a particular tier in an eaf file (ELAN - Annotation Format). - - Tiers are nodes from the tree structure in the .eaf file. - The tier to read from is determined by tier order (eg top tier would be order 1), - tier type (eg default-lt) or tier name (eg Phrase). - - Parameters: - elan_file_path: The path to the eaf file. - selection_type: The method of determining which tier data to extract. - selection_data: The data corresponding to the selection_type. - - Returns: - A list of the annotations contained for the supplied data. Returns an - empty list if the given selection isn't found. - """ - logger.info( - f"processing eaf {elan_file_path} using {selection_type}: {selection_data}" - ) - - match selection_type: - case TierSelector.NAME: - return get_annotations_by_tier_name(elan_file_path, selection_data) - case TierSelector.TYPE: - return get_annotations_by_tier_type(elan_file_path, selection_data) - case TierSelector.ORDER: - try: - order = int(selection_data) - except: - order = 1 - return get_annotations_by_tier_order(elan_file_path, order) - - -def get_annotations_by_tier_order( - elan_file_path: Path, tier_order: int -) -> List[Annotation]: - """Retrieves all annotations for a given tier order within an eaf file. - - Parameters: - elan_file_path: The path to the eaf file. - tier_order: The tier order to extract from (starts at 1) - - Returns: - A list of the annotations contained for the supplied tier order. - Returns an empty list if the given tier order exceeds the nesting of - the file. - """ - elan = Eaf(elan_file_path) - - tier_names: List[str] = list(elan.get_tier_names()) - if tier_order > len(tier_names): - logger.error( - f"tier_order: {tier_order} exceeds tier length for {elan_file_path}" - ) - return [] - - tier_name = tier_names[tier_order - 1] - return get_annotations_by_tier_name( - elan_file_path=elan_file_path, tier_name=tier_name - ) - - -def get_annotations_by_tier_type( - elan_file_path: Path, tier_type: str -) -> List[Annotation]: - """Retrieves all annotations for a given linguistic tier type in an eaf file. - - Parameters: - elan_file_path: The path to the eaf file. - tier_type: The linguistic type from which to extract Annotation data. - - Returns: - A list of the annotations contained for the supplied linguistic type. - Returns an empty list if the type is not found. - """ - elan = Eaf(elan_file_path) - - if tier_type not in list(elan.get_linguistic_type_names()): - logger.error(f"tier_type: {tier_type} not found in file: {elan_file_path}") - return [] - - tier_names = elan.get_tier_ids_for_linguistic_type(tier_type) - annotations = ( - get_annotations_by_tier_name(elan_file_path, name) for name in tier_names - ) - # Flatten list of annotations - return list(chain(*annotations)) - - -def get_annotations_by_tier_name( - elan_file_path: Path, tier_name: str -) -> List[Annotation]: - """Retrieves all annotations for a given tier name in an eaf file. - - Parameters: - elan_file_path: The path to the eaf file. - tier_name: The tier name from which to extract Annotation data. - - Returns: - A list of the annotations contained for the supplied tier name. - Returns an empty list if the name is not found. - """ - elan = Eaf(elan_file_path) - - if tier_name not in list(elan.get_tier_names()): - logger.error(f"tier_name: {tier_name} not found in file {elan_file_path}") - return [] - - parameters: Dict[str, str] = elan.get_parameters_for_tier(tier_name) - speaker_id = parameters.get("PARTICIPANT", None) - - def create_annotation(elan_annotation: Tuple[str, str, str]) -> Annotation: - start, end, transcript = elan_annotation - return Annotation( - audio_file_name=f"{elan_file_path.stem}.wav", - transcript=transcript, - start_ms=int(start), - stop_ms=int(end), - speaker_id=speaker_id, - ) - - return list(map(create_annotation, elan.get_annotation_data_for_tier(tier_name))) diff --git a/functions/utils/pubsub.py b/functions/utils/pubsub.py index 24b071b..14c30b4 100644 --- a/functions/utils/pubsub.py +++ b/functions/utils/pubsub.py @@ -2,7 +2,7 @@ from concurrent import futures from typing import Any, Callable, Iterable -from google.cloud import pubsub_v1 +from google.cloud.pubsub_v1 import PublisherClient from google.cloud.pubsub_v1.futures import Future from loguru import logger @@ -16,7 +16,7 @@ def publish_to_topic(topic_name: str, data: Iterable[Any], timeout: int = 60) -> data: A list of objects to serialize, encode and publish as separate messages timeout: How long the publishing should wait until erroring. """ - publisher = pubsub_v1.PublisherClient() + publisher = PublisherClient() publish_futures = [] def get_callback(publish_future: Future, data: str) -> Callable[[Future], None]: