From b743d4dd4a8ea82171e5198b4121f9d45d316405 Mon Sep 17 00:00:00 2001 From: Mathias Johansson Date: Thu, 30 Jan 2025 15:23:09 +0100 Subject: [PATCH] fix filter --- BALSAMIC/constants/variant_filters.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/BALSAMIC/constants/variant_filters.py b/BALSAMIC/constants/variant_filters.py index 53cef504a..c1fe7a541 100644 --- a/BALSAMIC/constants/variant_filters.py +++ b/BALSAMIC/constants/variant_filters.py @@ -289,9 +289,6 @@ def get_filters( class WgsSNVFilters(BaseSNVFilters): research = [ - VCFFilter( - filter_name="MERGED", Description="SNV Merged with neighboring variants" - ), VCFFilter(tag_value=0.01, filter_name="SWEGENAF", field="INFO"), VCFFilter(tag_value=0.001, filter_name="balsamic_high_pop_freq", field="INFO"), ] @@ -332,6 +329,9 @@ class WgsSNVFilters(BaseSNVFilters): class TgaSNVFilters(BaseSNVFilters): research = [ + VCFFilter( + filter_name="MERGED", Description="SNV Merged with neighboring variants" + ), VCFFilter(tag_value=0.01, filter_name="SWEGENAF", field="INFO"), VCFFilter(tag_value=0.005, filter_name="balsamic_high_pop_freq", field="INFO"), ]