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run_ct_connectivity.py
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run_ct_connectivity.py
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from dash_connectivity_viewer.cell_type_connectivity import create_app
minnie_config = {
"cell_type_dropdown_options": [
{
"label": "All Soma Prediction",
"value": "aibs_soma_nuc_metamodel_preds_v117",
},
{
"label": "Column Census",
"value": "minnie65_phase3_v1",
},
],
"datastack": "minnie65_phase3_v1",
"server_address": "https://global.daf-apis.com",
"syn_position_column": "ctr_pt",
"synapse_aggregation_rules": {
"mean_size": {
"column": "size",
"agg": "mean",
},
"net_size": {
"column": "size",
"agg": "sum",
},
},
"omit_cell_type_tables": ["nucleus_detection_v0", "nucleus_neuron_svm"],
"default_cell_type_option": "aibs_soma_nuc_metamodel_preds_v117",
"image_black": 0.35,
"image_white": 0.7,
"height_bounds": [0, 950],
"layer_bounds": [106, 276, 411, 535, 768],
}
v1dd_config = {
"datastack": "v1dd",
"server_address": "https://globalv1.em.brain.allentech.org",
"syn_position_column": "ctr_pt",
"synapse_aggregation_rules": {
"mean_size": {
"column": "size",
"agg": "mean",
},
"net_size": {
"column": "size",
"agg": "sum",
},
},
"omit_cell_type_tables": ["nucleus_detection_v0"],
"image_black": 0.35,
"image_white": 0.7,
"height_bounds": [-20, 900],
"layer_bounds": [100, 270, 400, 550, 750],
}
flywire_config = {
"datastack": "flywire_fafb_production",
"server_address": "https://global.daf-apis.com",
"syn_position_column": "pre_pt",
"ct_conn_show_depth_plots": False,
}
fanc_config = {
"datastack": "fanc_production_mar2021",
"server_address": "https://global.daf-apis.com",
"syn_position_column": "pre_pt",
"ct_conn_show_depth_plots": False,
}
minnie_public_config = minnie_config.copy()
minnie_public_config["datastack"] = "minnie65_public"
minnie_public_config["disallow_live_query"] = True
minnie_public_config["viewer_site"] = "https://spelunker.cave-explorer.org"
minnie_public_config["target_site"] = "mainline"
minnie_public_config["debug"] = True
if __name__ == "__main__":
app = create_app(config=minnie_public_config)
app.run_server(
port=8050,
debug=True,
)