setup.py

from setuptools import setup, find_packages
# To use a consistent encoding
from codecs import open
from os import path


here = path.abspath(path.dirname(__file__))


with open(path.join(here, 'README.md'), encoding='utf-8') as f:
    long_description = f.read()

setup(
    name='activ',

    scripts=['bin/run_bootstrap_umap_clustering.py',
             'bin/run_jackknife_umap_clustering.py',
             'bin/run_subsample_umap_clustering.py',
             'bin/summarize_sweep_results.py',
             'bin/aggregate_sweep_results.py',
             'bin/summarize_umap_clustering.py',
             'bin/make_blob_data.py',
             'bin/merge_tracktbi.py',
             'bin/run_uoinmf.py',
             'bin/plot_cca_results.py',
             'bin/run_cca.py',
             'bin/plot_uoinmf_results.py',
             'bin/plot_summary.py',
             'scripts/latent_feature_analysis.sh'],


    # Versions should comply with PEP440.  For a discussion on single-sourcing
    # the version across setup.py and the project code, see
    # https://packaging.python.org/en/latest/single_source_version.html
    version='0.0.1',

    description='TBIanalysis machine learning',
    long_description=long_description,


    # Author details
    author='',
    author_email='',

    # See https://pypi.python.org/pypi?%3Aaction=list_classifiers
    classifiers=[
        # How mature is this project? Common values are
        #   3 - Alpha
        #   4 - Beta
        #   5 - Production/Stable
        'Development Status :: 3 - Alpha',

        # Indicate who your project is intended for
        'Intended Audience :: Science/Research',
        'Topic :: Scientific/Engineering',

        # Pick your license as you wish (should match "license" above)
        'License :: OSI Approved :: MIT License',

        # Specify the Python versions you support here. In particular, ensure
        # that you indicate whether you support Python 2, Python 3 or both.
        'Programming Language :: Python :: 2',
        'Programming Language :: Python :: 2.6',
        'Programming Language :: Python :: 2.7',
        'Programming Language :: Python :: 3',
        'Programming Language :: Python :: 3.2',
        'Programming Language :: Python :: 3.3',
        'Programming Language :: Python :: 3.4',
        'Programming Language :: Python :: 3.5',
    ],

    # What does your project relate to?
    keywords='activ',

    # You can just specify the packages manually here if your project is
    # simple. Or you can use find_packages().
    packages=find_packages(),

    # Alternatively, if you want to distribute just a my_module.py, uncomment
    # this:
    #   py_modules=["my_module"],

    # List run-time dependencies here.  These will be installed by pip when
    # your project is installed. For an analysis of "install_requires" vs pip's
    # requirements files see:
    # https://packaging.python.org/en/latest/requirements.html
    #install_requires=['numpy', 'scikit-learn', 'scipy', 'ipython', 'umap-learn', 'h5py', 'pandas', 'matplotlib'],

    # List additional groups of dependencies here (e.g. development
    # dependencies). You can install these using the following syntax,
    # for example:
    # $ pip install -e .[dev,test]


    # To provide executable scripts, use entry points in preference to the
    # "scripts" keyword. Entry points provide cross-platform support and allow
    # pip to create the appropriate form of executable for the target platform.
    #entry_points={
    #    'console_scripts': [
    #        'sample=sample:main',
    #    ],
    #},
)