Dockerfile

FROM ghcr.io/bioconductor/shiny:devel as build

RUN chown -R shiny /usr/local/lib/R/site-library && chown -R shiny /usr/local/lib/R/library && rm -rf /srv/shiny-server/sample-apps && curl -o /srv/shiny-server/index.html https://gist.githubusercontent.com/almahmoud/58261d03bfb342274f2e642c4b2ebc4d/raw/4e0271990bce57ae091f622db47b15f8fd89fa29/index.html && mkdir -p /srv/shiny-server/biocshiny && sed -i '/^run_as shiny;/a app_init_timeout 300;\napp_idle_timeout 300;' /etc/shiny-server/shiny-server.conf

COPY --chown=shiny:shiny . /tmp/repo/

USER shiny

RUN cd /tmp/repo && Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask=FALSE)" && Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())" && rm -rf /tmp/repo

COPY --chown=shiny:shiny app.R /srv/shiny-server/biocshiny/app.R

USER root