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Gemfile.lock
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GIT
remote: https://github.com/SysMO-DB/acts_as_activity_logged.git
revision: da0b6d8e4ccabfa231c39aa89522c8ba73f03c0e
specs:
acts_as_activity_logged (0.3.3)
GIT
remote: https://github.com/SysMO-DB/acts_as_trashable.git
revision: ff5dcddece0d03014a8ffde526da59a151501cd7
specs:
acts_as_trashable (1.0.6)
activerecord (>= 2.2)
GIT
remote: https://github.com/SysMO-DB/app_version.git
revision: 773b6ae72d9cba038fce1a3502feb5de2f2b75a3
specs:
app_version (1.0.0)
GIT
remote: https://github.com/SysMO-DB/convert_office.git
revision: 753f2567dbd625bc89071e1150404efbb562e130
ref: 753f2567dbd625bc89071e1150404efbb562e130
specs:
convert_office (0.9.1)
GIT
remote: https://github.com/SysMO-DB/doi_query_tool.git
revision: d87ae6ffa2393beba4bbb49817cf04a60f520fee
specs:
doi_query_tool (0.0.0)
GIT
remote: https://github.com/SysMO-DB/fleximage
revision: 658985eb1460fb5d6612f624463e6cbf067ad973
specs:
fleximage (0.1)
GIT
remote: https://github.com/SysMO-DB/gibberish.git
revision: d24c42b9608f39f82e37e757f530d8199049c557
specs:
gibberish (1.0.0)
GIT
remote: https://github.com/SysMO-DB/my_rails_settings.git
revision: e3f7fe9625ea27fea42b02c95e30cb4f1341655b
specs:
my_rails_settings (1.0.0)
GIT
remote: https://github.com/SysMO-DB/my_responds_to_parent.git
revision: 5fadfd0cd85a0a70caaddd36f9617cb743047e0b
specs:
my_responds_to_parent (1.0.0)
GIT
remote: https://github.com/SysMO-DB/my_savage_beast
revision: 4ff41d5e7d1f17440240fe0886a7c9827f8f53c6
specs:
my_savage_beast (2.3)
GIT
remote: https://github.com/SysMO-DB/open_id_authentication.git
revision: 5f6c85f1478545856aa36d1cc234255b9abc0c13
specs:
open_id_authentication (1.1.0)
rack-openid (~> 1.3)
GIT
remote: https://github.com/SysMO-DB/piwik-ruby-tracking.git
revision: 06fa67ba4b2bd66878d745e9de5d6d6c8015bc92
specs:
piwik_analytics (1.0.1)
actionpack
activesupport
rails (>= 3.0.0)
GIT
remote: https://github.com/SysMO-DB/redbox
revision: 494451d01aeeb70b186783d08b6b9aefcb537e98
specs:
redbox (1.0.4)
GIT
remote: https://github.com/SysMO-DB/site_announcements.git
revision: 91ceecf26ab29a74e32e239827fd5fef8519df0f
specs:
site_announcements (1.1)
GIT
remote: https://github.com/SysMO-DB/white_list.git
revision: 3f9798ec54f227e852b944bb14f6f90d05cde893
specs:
white_list (1.0.0)
GIT
remote: https://github.com/SysMO-DB/white_list_formatted_content.git
revision: c02bea47e477c1ac59e45a2a8a51aaa2c8e6b72f
specs:
white_list_formatted_content (1.0.0)
GIT
remote: https://github.com/myGrid/annotations.git
revision: d33e78993ee957fa12d71cbe9f03100dd9b0ad15
specs:
my_annotations (0.6.0)
GIT
remote: https://github.com/myGrid/search_biomodel.git
revision: e109ac6d8b102f7ecb65140c17d263b85e066870
specs:
search_biomodel (2.2.1)
GIT
remote: https://github.com/myGrid/taverna-player.git
revision: 13729ab3c20797131af9e15c754cefa8c2da5609
branch: list-inputs
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coderay (~> 1.1)
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delayed_job_active_record (~> 4.0)
jbuilder (~> 2.0)
jquery-rails (~> 3.0)
paperclip (~> 4.1)
pmrpc-rails (~> 1.0.0)
rails (~> 3.2.12)
rails_autolink (~> 1.1.0)
require_all (~> 1.3.1)
rubyzip (~> 1.1.4)
t2-server (~> 1.2)
taverna-t2flow (~> 0.5.1)
GIT
remote: https://github.com/paneq/calendar_date_select.git
revision: 977048211b94599fe0f08eb37a481f3d69df48f6
specs:
calendar_date_select (1.16.2)
GEM
remote: https://rubygems.org/
specs:
RedCloth (4.2.9)
actionmailer (3.2.17)
actionpack (= 3.2.17)
mail (~> 2.5.4)
actionpack (3.2.17)
activemodel (= 3.2.17)
activesupport (= 3.2.17)
builder (~> 3.0.0)
erubis (~> 2.7.0)
journey (~> 1.0.4)
rack (~> 1.4.5)
rack-cache (~> 1.2)
rack-test (~> 0.6.1)
sprockets (~> 2.2.1)
activemodel (3.2.17)
activesupport (= 3.2.17)
builder (~> 3.0.0)
activerecord (3.2.17)
activemodel (= 3.2.17)
activesupport (= 3.2.17)
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activemodel (= 3.2.17)
activesupport (= 3.2.17)
activesupport (3.2.17)
i18n (~> 0.6, >= 0.6.4)
multi_json (~> 1.0)
acts-as-taggable-on (3.0.1)
rails (>= 3, < 5)
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term-ansicolor
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flay (2.5.0)
ruby_parser (~> 3.0)
sexp_processor (~> 4.0)
flog (4.2.1)
ruby_parser (~> 3.1, > 3.1.0)
sexp_processor (~> 4.4)
fssm (0.2.10)
google-analytics-rails (0.0.6)
gyoku (0.4.6)
builder (>= 2.1.2)
haml (4.0.5)
tilt
hashie (2.1.1)
hike (1.2.3)
hpricot (0.8.6)
htmlentities (4.3.1)
httparty (0.12.0)
json (~> 1.8)
multi_xml (>= 0.5.2)
httpi (1.1.1)
rack
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in_place_editing (1.2.0)
jbuilder (2.2.5)
activesupport (>= 3.0.0, < 5)
multi_json (~> 1.2)
journey (1.0.4)
jquery-rails (3.1.1)
railties (>= 3.0, < 5.0)
thor (>= 0.14, < 2.0)
json (1.8.1)
json-ld (1.1.4)
rdf (~> 1.1)
kgio (2.9.2)
libxml-ruby (2.6.0)
linkeddata (1.1.1)
equivalent-xml (>= 0.4.0)
json-ld (>= 1.1.1)
nokogiri (>= 1.6.1)
rdf (>= 1.1.1)
rdf-aggregate-repo (>= 1.1.0)
rdf-isomorphic (>= 1.1.0)
rdf-json (>= 1.1.0)
rdf-microdata (>= 1.1.1)
rdf-n3 (>= 1.1.0)
rdf-rdfa (>= 1.1.1)
rdf-rdfxml (>= 1.1.0)
rdf-trig (>= 1.1.2)
rdf-trix (>= 1.1.0)
rdf-turtle (>= 1.1.2)
sparql (>= 1.1.2)
sparql-client (>= 1.1.1)
lograge (0.3.0)
actionpack (>= 3)
activesupport (>= 3)
railties (>= 3)
loofah (2.0.0)
nokogiri (>= 1.5.9)
mail (2.5.4)
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treetop (~> 1.4.8)
method_source (0.8.2)
mime-types (1.25.1)
mini_portile (0.6.0)
minitest (4.7.5)
minitest-reporters (0.14.24)
ansi
builder
minitest (>= 2.12, < 5.0)
powerbar
modporter-plugin (0.1.0)
multi_json (1.10.1)
multi_xml (0.5.5)
mysql2 (0.3.16)
net-http-persistent (2.9.4)
nokogiri (1.6.2.1)
mini_portile (= 0.6.0)
nori (1.1.5)
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activemodel (>= 3.0.0)
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ast (>= 1.1, < 3.0)
slop (~> 3.4, >= 3.4.5)
passenger (4.0.45)
daemon_controller (>= 1.2.0)
rack
rake (>= 0.8.1)
pmrpc-rails (1.0.1)
railties (>= 3.1.0)
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pothoven-attachment_fu (3.2.13)
powerbar (1.0.11)
ansi (~> 1.4.0)
hashie (>= 1.1.0)
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pr_geohash (1.0.0)
prototype-rails (3.2.1)
rails (~> 3.2)
pry (0.9.12.6)
coderay (~> 1.0)
method_source (~> 0.8)
slop (~> 3.4)
pry-doc (0.6.0)
pry (~> 0.9)
yard (~> 0.8)
pry-remote (0.1.8)
pry (~> 0.9)
slop (~> 3.0)
rack (1.4.5)
rack-cache (1.2)
rack (>= 0.4)
rack-openid (1.4.2)
rack (>= 1.1.0)
ruby-openid (>= 2.1.8)
rack-ssl (1.3.4)
rack
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rack (>= 1.0)
rails (3.2.17)
actionmailer (= 3.2.17)
actionpack (= 3.2.17)
activerecord (= 3.2.17)
activeresource (= 3.2.17)
activesupport (= 3.2.17)
bundler (~> 1.0)
railties (= 3.2.17)
rails_autolink (1.1.6)
rails (> 3.1)
railties (3.2.17)
actionpack (= 3.2.17)
activesupport (= 3.2.17)
rack-ssl (~> 1.3.2)
rake (>= 0.8.7)
rdoc (~> 3.4)
thor (>= 0.14.6, < 2.0)
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raindrops (0.13.0)
rake (10.3.2)
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rdf (1.1.3)
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rdf (>= 1.1.0)
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haml (~> 4.0)
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rdf-rdfxml (1.1.0.1)
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rdf-trig (1.1.3.1)
ebnf (~> 0.3, >= 0.3.5)
rdf (~> 1.1, >= 1.1.2.1)
rdf-turtle (~> 1.1, >= 1.1.3)
rdf-trix (1.1.0)
rdf (>= 1.1)
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rdf (~> 1.1, >= 1.1.3)
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sexp_processor
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json (>= 1.7.7, < 2)
parser (>= 2.2.0.pre.2, < 3.0)
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ruby-progressbar (~> 1.4)
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ruby_parser (~> 3.1)
sexp_processor (~> 4.0)
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libxml-ruby (~> 2.6.0)
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open4 (= 1.3.0)
open4 (= 1.3.0)
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sxp (0.1.5)
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builder (~> 3.0)
taverna-t2flow (0.5.1)
libxml-ruby (>= 1.1.4)
term-ansicolor (1.3.0)
tins (~> 1.0)
test_after_commit (0.2.3)
thor (0.19.1)
tilt (1.4.1)
tins (1.3.0)
transaction_isolation (1.0.3)
activerecord (>= 3.0.11)
treetop (1.4.15)
polyglot
polyglot (>= 0.3.1)
turbo-sprockets-rails3 (0.3.11)
railties (> 3.2.8, < 4.0.0)
sprockets (>= 2.2.0)
tzinfo (0.3.39)
unicorn (4.8.3)
kgio (~> 2.6)
rack
raindrops (~> 0.7)
unicorn-rails (2.1.1)
rack
unicorn
uuidtools (2.1.4)
wasabi (2.5.1)
httpi (~> 1.0)
nokogiri (>= 1.4.0)
webmock (1.17.4)
addressable (>= 2.2.7)
crack (>= 0.3.2)
will_paginate (3.0.5)
yaml_db (0.2.3)
yard (0.8.7.4)
yui-compressor (0.12.0)
PLATFORMS
ruby
DEPENDENCIES
RedCloth (= 4.2.9)
acts-as-taggable-on (= 3.0.1)
acts_as_activity_logged!
acts_as_list
acts_as_trashable!
acts_as_tree
app_version!
bio
bioportal (>= 2.2)
bives
breadcrumbs_on_rails
calendar_date_select!
cancan
cocaine
colorize
convert_office!
country-select
coveralls
daemons
delayed_job_active_record
docsplit
doi_query_tool!
dynamic_form
equivalent-xml
exception_notification
factory_girl (= 2.6.4)
feedjira (~> 1)
flay
fleximage!
flog
fssm
gibberish!
google-analytics-rails
hpricot (~> 0.8.2)
in_place_editing
jquery-rails (~> 3)
libxml-ruby (>= 2.6.0)
linkeddata
lograge
minitest-reporters (~> 0.14)
modporter-plugin
my_annotations!
my_rails_settings!
my_responds_to_parent!
my_savage_beast!
mysql2
nokogiri
open_id_authentication!
passenger
piwik_analytics!
pothoven-attachment_fu
prototype-rails
pry
pry-doc
pry-remote
rack-openid
rails (= 3.2.17)
rails_autolink
rdf-virtuoso (>= 0.1.6)
rdoc
redbox!
reek
request-log-analyzer
rest-client (>= 1.6.1)
rfc-822
rmagick (= 2.13.2)
rubocop
ruby-openid
ruby-prof
rubyzip (~> 1.1.4)
savon (= 1.1.0)
search_biomodel (= 2.2.1)!
simple-spreadsheet-extractor (~> 0.13.3)
site_announcements!
sqlite3
sunspot_rails
sunspot_solr
taverna-player!
taverna-t2flow
test_after_commit
transaction_isolation
turbo-sprockets-rails3
unicorn-rails
uuidtools
webmock
white_list!
white_list_formatted_content!
will_paginate (~> 3.0.4)
yaml_db
yui-compressor