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anonymization options? #10

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delta2golf opened this issue Sep 21, 2021 · 2 comments
Open

anonymization options? #10

delta2golf opened this issue Sep 21, 2021 · 2 comments
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enhancement New feature or request

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@delta2golf
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Thank you for creating this library. It is very helpful.
Is it possible to include anonymization options?
The anonymization tool below remove associated images such as label, but does not remove/change metadata for example aperio.ScanScope ID, aperio.Date

https://github.com/bgilbert/anonymize-slide

@ap--
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ap-- commented Sep 21, 2021

Hi @delta2golf,

Thanks 😊 It's always nice to hear that tiffslide is useful to users ❤️

Now regarding your question about anonymization:
Currently this is out of scope for tiffslide, but we will soon release an open-source whole slide image dataset library that will include anonymization utilities.

Let's keep this issue open, and I will reply here once we release that library.

Cheers,
Andreas 😃

@ap-- ap-- added the enhancement New feature or request label Sep 21, 2021
@sarthakpati
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Unsure if you folks are still working on this, but our group has extended the anonymize-slide package. You can find more details on usage here: https://cbica.github.io/GaNDLF/usage#anonymize-data and the actual script is https://github.com/CBICA/GaNDLF/blob/master/gandlf_anonymizer

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