docker-compose.yml

version: "3.6"

services:
  postgres:
    build:
      context: ./postgres
    command: postgres -c 'port=5001' -c 'temp_buffers=200MB' -c 'work_mem=200MB' -c 'max_connections=100' -c 'random_page_cost=1'
    environment:
      - PGPORT=5001
      - POSTGRES_PASSWORD=postgres
      # the follwing variables can be defined to enable a feature that displays temporary credentials fpr h5ad study upload by users
      - S3_BUCKET
      - AWS_REGION
      - USER_STUDY_UPLOAD_CONFIGURED
      # AWS credentials - can be omitted if deployed in AWS context (e.g. role is assigned to EC2 / ECS container etc.)
      # AWS access is required if study h5ad files shall be stored in AWS only, not necessary by default.
      #- AWS_ACCESS_KEY_ID=${AWS_ACCESS_KEY_ID}
      #- AWS_SECRET_ACCESS_KEY=${AWS_SECRET_ACCESS_KEY}
      #- AWS_SESSION_TOKEN=${AWS_SESSION_TOKEN}
    ports:
      - "5001:5001"
    restart: always
    volumes:
      - postgresdata:/var/lib/postgresql/data
      - ./database_schema:/database_schema
      - ./scratch:/h5ad_store

  postgraphile:
    build:
      context: ./postgraphile
    restart: always
    environment:
      # study-level permissions are not in effect until permissions are set in the study table,
      # these are demo examples for testing:
      - AUTH_HEADER_NAME
      # - AUTH_HEADER_MOCK_VALUE=Group1;Group2
      - DATABASE_URL=postgres://postgraphile:postgraphile@postgres:5001/postgres
      # the postgraphile database user is sufficient for the API;
      # during development it is helpful to enable database schema watching in postgres,
      # which needs more permissions. (optional environment variable)
      - OWNER_DATABASE_URL=postgres://postgres:postgres@postgres:5001/postgres
      - PORT=5000
    ports:
      - "5000:5000"

  client:
    restart: always
    build:
      context: ./client
    ports:
      - "5002:5002"

volumes:
  postgresdata: