Error on pip install

[serenalotreck]

When I try and install the package, I get the following error:

  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  error: subprocess-exited-with-error
  
  × Getting requirements to build wheel did not run successfully.
  │ exit code: 1
  ╰─> [164 lines of output]
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
          int length
      
      
      cdef class Vocab:
          cdef Pool mem
          cpdef readonly StringStore strings
                ^
      ------------------------------------------------------------
      
      spacy/vocab.pxd:28:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
      
      
      cdef class Vocab:
          cdef Pool mem
          cpdef readonly StringStore strings
          cpdef public Morphology morphology
                ^
      ------------------------------------------------------------
      
      spacy/vocab.pxd:29:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
      
      cdef class Vocab:
          cdef Pool mem
          cpdef readonly StringStore strings
          cpdef public Morphology morphology
          cpdef public object vectors
                ^
      ------------------------------------------------------------
      
      spacy/vocab.pxd:30:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
      cdef class Vocab:
          cdef Pool mem
          cpdef readonly StringStore strings
          cpdef public Morphology morphology
          cpdef public object vectors
          cpdef public object _lookups
                ^
      ------------------------------------------------------------
      
      spacy/vocab.pxd:31:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
          cdef Pool mem
          cpdef readonly StringStore strings
          cpdef public Morphology morphology
          cpdef public object vectors
          cpdef public object _lookups
          cpdef public object writing_system
                ^
      ------------------------------------------------------------
      
      spacy/vocab.pxd:32:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
          cpdef readonly StringStore strings
          cpdef public Morphology morphology
          cpdef public object vectors
          cpdef public object _lookups
          cpdef public object writing_system
          cpdef public object get_noun_chunks
                ^
      ------------------------------------------------------------
      
      spacy/vocab.pxd:33:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
          cdef float prior_prob
      
      
      cdef class KnowledgeBase:
          cdef Pool mem
          cpdef readonly Vocab vocab
                ^
      ------------------------------------------------------------
      
      spacy/kb.pxd:31:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.
      Copied /tmp/pip-install-2b1stxhf/spacy_240f1e06418342eb88af85a39eba4527/setup.cfg -> /tmp/pip-install-2b1stxhf/spacy_240f1e06418342eb88af85a39eba4527/spacy/tests/package
      Copied /tmp/pip-install-2b1stxhf/spacy_240f1e06418342eb88af85a39eba4527/pyproject.toml -> /tmp/pip-install-2b1stxhf/spacy_240f1e06418342eb88af85a39eba4527/spacy/tests/package
      Cythonizing sources
      Compiling spacy/training/example.pyx because it changed.
      Compiling spacy/parts_of_speech.pyx because it changed.
      Compiling spacy/strings.pyx because it changed.
      Compiling spacy/lexeme.pyx because it changed.
      Compiling spacy/vocab.pyx because it changed.
      Compiling spacy/attrs.pyx because it changed.
      Compiling spacy/kb.pyx because it changed.
      Compiling spacy/ml/parser_model.pyx because it changed.
      Compiling spacy/morphology.pyx because it changed.
      Compiling spacy/pipeline/dep_parser.pyx because it changed.
      Compiling spacy/pipeline/morphologizer.pyx because it changed.
      Compiling spacy/pipeline/multitask.pyx because it changed.
      Compiling spacy/pipeline/ner.pyx because it changed.
      Compiling spacy/pipeline/pipe.pyx because it changed.
      Compiling spacy/pipeline/trainable_pipe.pyx because it changed.
      Compiling spacy/pipeline/sentencizer.pyx because it changed.
      Compiling spacy/pipeline/senter.pyx because it changed.
      Compiling spacy/pipeline/tagger.pyx because it changed.
      Compiling spacy/pipeline/transition_parser.pyx because it changed.
      Compiling spacy/pipeline/_parser_internals/arc_eager.pyx because it changed.
      Compiling spacy/pipeline/_parser_internals/ner.pyx because it changed.
      Compiling spacy/pipeline/_parser_internals/nonproj.pyx because it changed.
      Compiling spacy/pipeline/_parser_internals/_state.pyx because it changed.
      Compiling spacy/pipeline/_parser_internals/stateclass.pyx because it changed.
      Compiling spacy/pipeline/_parser_internals/transition_system.pyx because it changed.
      Compiling spacy/pipeline/_parser_internals/_beam_utils.pyx because it changed.
      Compiling spacy/tokenizer.pyx because it changed.
      Compiling spacy/training/align.pyx because it changed.
      Compiling spacy/training/gold_io.pyx because it changed.
      Compiling spacy/tokens/doc.pyx because it changed.
      Compiling spacy/tokens/span.pyx because it changed.
      Compiling spacy/tokens/token.pyx because it changed.
      Compiling spacy/tokens/span_group.pyx because it changed.
      Compiling spacy/tokens/graph.pyx because it changed.
      Compiling spacy/tokens/morphanalysis.pyx because it changed.
      Compiling spacy/tokens/_retokenize.pyx because it changed.
      Compiling spacy/matcher/matcher.pyx because it changed.
      Compiling spacy/matcher/phrasematcher.pyx because it changed.
      Compiling spacy/matcher/dependencymatcher.pyx because it changed.
      Compiling spacy/symbols.pyx because it changed.
      Compiling spacy/vectors.pyx because it changed.
      [ 1/41] Cythonizing spacy/attrs.pyx
      [ 2/41] Cythonizing spacy/kb.pyx
      Traceback (most recent call last):
        File "/mnt/home/lotrecks/anaconda3/envs/graphs/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
          main()
        File "/mnt/home/lotrecks/anaconda3/envs/graphs/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
        File "/mnt/home/lotrecks/anaconda3/envs/graphs/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
          return hook(config_settings)
        File "/tmp/pip-build-env-ytg7xk32/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 355, in get_requires_for_build_wheel
          return self._get_build_requires(config_settings, requirements=['wheel'])
        File "/tmp/pip-build-env-ytg7xk32/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 325, in _get_build_requires
          self.run_setup()
        File "/tmp/pip-build-env-ytg7xk32/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 341, in run_setup
          exec(code, locals())
        File "<string>", line 224, in <module>
        File "<string>", line 211, in setup_package
        File "/tmp/pip-build-env-ytg7xk32/overlay/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1154, in cythonize
          cythonize_one(*args)
        File "/tmp/pip-build-env-ytg7xk32/overlay/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1321, in cythonize_one
          raise CompileError(None, pyx_file)
      Cython.Compiler.Errors.CompileError: spacy/kb.pyx
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

It looks like this is maybe related to spacy, and not pubtator loader directly, but I've never gotten this error when installing spacy with other packages. Wondering if you've seen this error?