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Kinship matrix generation #17

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Thatguy027 opened this issue Mar 31, 2018 · 1 comment

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Thatguy027 commented Mar 31, 2018

Should we be using a kinship matrix built on the entire SNV set?

I think we should be running LD pruning prior to generating a kinship matrix to not inflate sample relatedness.

Does the A.mat function of rrBLUP, take marker LD into consideration when making the kinship matrix?

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Thatguy027 commented Jun 15, 2018

lets also test kinship matrices generated using this popkin package

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