diff --git a/scRNA-seq/04-dimension_reduction_scRNA.Rmd b/scRNA-seq/04-dimension_reduction_scRNA.Rmd index 13b00696..19089b04 100644 --- a/scRNA-seq/04-dimension_reduction_scRNA.Rmd +++ b/scRNA-seq/04-dimension_reduction_scRNA.Rmd @@ -253,7 +253,7 @@ filtered_sce <- filtered_sce[, filtered_sce$sum >= 500] qclust <- scran::quickCluster(filtered_sce) -filtered_sce <- scran::computeSumFactors(filtered_sce, clusters = qclust, positive = FALSE) +filtered_sce <- scran::computeSumFactors(filtered_sce, clusters = qclust) ``` Looks good! Now we'll do the normalization.