NAMESPACE

# Generated by roxygen2: do not edit by hand

export(assoc)
export(assoc_adjust_from_bfile)
export(assoc_from_bfile)
export(assoc_qt)
export(assoc_qt_covar)
export(assoc_qt_on_plink2_bin_data)
export(assoc_qt_on_plink2_bin_files)
export(assoc_qt_on_plink_bin_data)
export(assoc_qt_on_plink_bin_files)
export(assoc_qt_on_plink_text_data)
export(assoc_qt_on_plink_text_files)
export(calc_additive_phenotype_values)
export(calc_dominant_phenotype_values)
export(calc_epistatic_phenotype_values)
export(calc_random_case_control_phenotype_values)
export(calc_random_phenotype_values)
export(calc_rnorm_phenotype_values)
export(calc_runif_phenotype_values)
export(can_plink_version_and_data_can_work_together)
export(check_allow_no_sex)
export(check_assoc_data)
export(check_assoc_params)
export(check_assoc_qt_covar_data)
export(check_assoc_qt_covar_params)
export(check_assoc_qt_data)
export(check_assoc_qt_params)
export(check_assoc_qt_result)
export(check_assoc_table)
export(check_base_input_filename)
export(check_base_output_filename)
export(check_bed_table)
export(check_bim_table)
export(check_calc_phenotype_function)
export(check_chromosome_number)
export(check_chromosome_selector)
export(check_confidence_interval)
export(check_cov_table)
export(check_data)
export(check_empty_plinkr_folder)
export(check_equal_number_of_snvs)
export(check_fam_filename)
export(check_fam_table)
export(check_fid)
export(check_fids)
export(check_iid)
export(check_iids)
export(check_ld_window_r2)
export(check_maf)
export(check_mafs)
export(check_map_table)
export(check_n_individuals)
export(check_n_samples)
export(check_n_snps)
export(check_os)
export(check_pca_result_filenames)
export(check_ped_table)
export(check_pgen_table)
export(check_phe_file_ok_for_qt)
export(check_phe_filename)
export(check_phe_table)
export(check_phe_table_ok_for_qt)
export(check_phenotype_data)
export(check_phenotype_data_filename)
export(check_phenotype_data_table)
export(check_phenotypes)
export(check_plink2_bin_data)
export(check_plink2_bin_filenames)
export(check_plink_args)
export(check_plink_bin_data)
export(check_plink_bin_filenames)
export(check_plink_filenames)
export(check_plink_is_installed)
export(check_plink_options)
export(check_plink_optionses)
export(check_plink_text_data)
export(check_plink_text_filenames)
export(check_plink_version)
export(check_plink_version_and_data_can_work_together)
export(check_psam_table)
export(check_pvar_table)
export(check_qassoc_table)
export(check_random_samples_selector)
export(check_random_snps_selector)
export(check_sample_ids)
export(check_sample_ids_filename)
export(check_sample_selector)
export(check_simulate_qt_params)
export(check_single_sample_selector)
export(check_single_snp_selector)
export(check_snp)
export(check_snp_range_selector)
export(check_snp_selector)
export(check_snp_window_selector)
export(check_snvs)
export(check_trait)
export(check_traits)
export(check_verbose)
export(check_window_kb)
export(clear_plink_folder)
export(clear_plinkr_cache)
export(compare_assoc_qt_speed)
export(convert_bed_table_to_pgen_table)
export(convert_bim_table_to_map_table)
export(convert_pgen_table_to_bed_table)
export(convert_plink2_bin_data_to_plink_bin_data)
export(convert_plink2_bin_data_to_plink_text_data)
export(convert_plink2_bin_files_to_plink_bin_files)
export(convert_plink2_bin_files_to_plink_text_files)
export(convert_plink_bin_data_to_ped_table)
export(convert_plink_bin_data_to_plink2_bin_data)
export(convert_plink_bin_data_to_plink_text_data)
export(convert_plink_bin_files_to_plink2_bin_files)
export(convert_plink_bin_files_to_plink_text_files)
export(convert_plink_bin_files_to_plink_vcf_files)
export(convert_plink_text_data_to_plink2_bin_data)
export(convert_plink_text_data_to_plink_bin_data)
export(convert_plink_text_files_to_plink2_bin_files)
export(convert_plink_text_files_to_plink_bin_files)
export(convert_psam_table_to_fam_table)
export(convert_pvar_table_to_bim_table)
export(create_additive_trait)
export(create_assoc_args)
export(create_assoc_data)
export(create_assoc_params)
export(create_assoc_qt_args)
export(create_assoc_qt_args_on_plink2_bin_data)
export(create_assoc_qt_args_on_plink2_bin_filenames)
export(create_assoc_qt_args_on_plink_bin_data)
export(create_assoc_qt_args_on_plink_bin_filenames)
export(create_assoc_qt_args_on_plink_text_data)
export(create_assoc_qt_args_on_plink_text_filenames)
export(create_assoc_qt_covar_args)
export(create_assoc_qt_covar_data)
export(create_assoc_qt_covar_params)
export(create_assoc_qt_data)
export(create_assoc_qt_params)
export(create_bgen_files_for_saige)
export(create_chromosome_selector)
export(create_convert_plink_bin_files_to_plink_text_files_args)
export(create_cov_table_from_data)
export(create_cov_table_from_ped_table)
export(create_custom_plink_options)
export(create_custom_trait)
export(create_demo_assoc_data)
export(create_demo_assoc_qt_covar_data)
export(create_demo_assoc_qt_data)
export(create_demo_map_table)
export(create_demo_ped_table)
export(create_demo_ped_table_lhs)
export(create_demo_ped_table_rhs)
export(create_demo_ped_table_rhs_trait)
export(create_demo_phe_table)
export(create_demo_phe_table_lhs)
export(create_demo_phe_table_rhs)
export(create_demo_traits)
export(create_dominant_trait)
export(create_epistatic_trait)
export(create_keep_args)
export(create_pca_args)
export(create_phe_table_from_data)
export(create_phe_table_from_fam_table)
export(create_phe_table_from_ped_table)
export(create_phe_table_from_plink2_bin_data)
export(create_phe_table_from_plink_bin2_filenames)
export(create_phe_table_from_plink_bin_data)
export(create_phe_table_from_plink_bin_filenames)
export(create_phe_table_from_plink_text_data)
export(create_phe_table_from_plink_text_filenames)
export(create_phe_table_from_psam_table)
export(create_phenotype_data_filename)
export(create_phenotype_data_table)
export(create_phenotype_data_table_from_data)
export(create_plink2_bin_data)
export(create_plink2_bin_filenames)
export(create_plink_bin_data)
export(create_plink_bin_filenames)
export(create_plink_options)
export(create_plink_optionses)
export(create_plink_text_data)
export(create_plink_text_filenames)
export(create_plink_v1_7_options)
export(create_plink_v1_9_options)
export(create_plink_v2_0_options)
export(create_random_case_control_trait)
export(create_random_samples_selector)
export(create_random_snps_selector)
export(create_random_trait)
export(create_rnorm_trait)
export(create_runif_trait)
export(create_samples_selector)
export(create_select_chromosome_args)
export(create_select_random_samples_args)
export(create_select_random_snp_args)
export(create_select_samples_args)
export(create_select_single_sample_args)
export(create_select_single_snp_args)
export(create_select_snp_range_args)
export(create_select_snp_window_args)
export(create_select_snps_args)
export(create_selected_sample_ids)
export(create_simulate_qt_params)
export(create_single_sample_selector)
export(create_single_snp_selector)
export(create_snp_range_selector)
export(create_snp_window_selector)
export(create_snps_selector)
export(create_snvs)
export(create_test_assoc_data)
export(create_test_assoc_params)
export(create_test_assoc_qt_covar_data)
export(create_test_assoc_qt_covar_params)
export(create_test_assoc_qt_data)
export(create_test_assoc_qt_params)
export(create_test_chromosome_selector)
export(create_test_pca_result_filenames)
export(create_test_phenotype_data_filename)
export(create_test_phenotype_data_table)
export(create_test_plink2_bin_data)
export(create_test_plink2_bin_filenames)
export(create_test_plink_bin_data)
export(create_test_plink_bin_filenames)
export(create_test_plink_text_data)
export(create_test_plink_text_filenames)
export(create_test_random_samples_selector)
export(create_test_random_snps_selector)
export(create_test_simulate_qt_params)
export(create_test_single_sample_selector)
export(create_test_single_snp_selector)
export(create_test_snp_range_selector)
export(create_test_snp_window_selector)
export(create_trait)
export(do_plink_self_test)
export(filter_random_snps)
export(freq_from_bfile)
export(freq_from_bfile_within_phe_file)
export(get_data_description)
export(get_default_plink_exe_path)
export(get_default_plink_version)
export(get_heighest_maf)
export(get_lowest_maf)
export(get_marker_correlation_coefficients)
export(get_marker_correlation_coefficients_table)
export(get_minor_alelle_frequencies)
export(get_n_samples)
export(get_n_samples_from_bed_table)
export(get_n_samples_from_bim_table)
export(get_n_samples_from_fam_table)
export(get_n_samples_from_map_table)
export(get_n_samples_from_ped_table)
export(get_n_samples_from_pgen_table)
export(get_n_samples_from_psam_table)
export(get_n_samples_from_pvar_table)
export(get_n_snps)
export(get_n_snps_from_bed_table)
export(get_n_snps_from_bim_table)
export(get_n_snps_from_map_table)
export(get_n_snps_from_ped_table)
export(get_n_snps_from_pgen_table)
export(get_n_snps_from_pvar_table)
export(get_os)
export(get_phenotypes)
export(get_plink1_versions)
export(get_plink2_versions)
export(get_plink_download_url)
export(get_plink_download_url_linux)
export(get_plink_download_url_mac)
export(get_plink_download_url_win)
export(get_plink_example_filename)
export(get_plink_example_filenames)
export(get_plink_exe_name)
export(get_plink_folder)
export(get_plink_help_text)
export(get_plink_subfolder_name)
export(get_plink_tutorial_data_filenames)
export(get_plink_version)
export(get_plink_versions)
export(get_plink_zip_path)
export(get_plinkr_filename)
export(get_plinkr_filenames)
export(get_plinkr_folder)
export(get_plinkr_tempfilename)
export(get_sample_ids_from_fam_file)
export(get_sample_ids_from_fam_table)
export(get_sample_ids_from_phe_file)
export(get_sample_ids_from_phe_table)
export(get_test_bed_table)
export(get_test_bim_table)
export(get_test_eigenval_table)
export(get_test_eigenvec_table)
export(get_test_fam_table)
export(get_test_map_table)
export(get_test_ped_table)
export(get_test_pgen_table)
export(get_test_phe_table)
export(get_test_psam_table)
export(get_test_pvar_table)
export(get_test_sample_ids)
export(has_bed_table_attributes)
export(has_pgen_table_attributes)
export(has_plink2_bin_files)
export(has_plink_bin_files)
export(has_plink_text_files)
export(install_plink)
export(install_plink_tutorial_data)
export(install_plinks)
export(is_assoc_qt_data)
export(is_bed_table)
export(is_bim_table)
export(is_chromosome_selector)
export(is_data)
export(is_exe)
export(is_fam_table)
export(is_map_table)
export(is_marees_et_al_data_installed)
export(is_on_appveyor)
export(is_on_ci)
export(is_on_github_actions)
export(is_on_travis)
export(is_one_trait)
export(is_ped_table)
export(is_pgen_table)
export(is_phenotype_data_filename)
export(is_phenotype_data_table)
export(is_plink2_bin_data)
export(is_plink2_bin_filenames)
export(is_plink_bin_data)
export(is_plink_bin_filenames)
export(is_plink_installed)
export(is_plink_text_data)
export(is_plink_text_filenames)
export(is_plink_tutorial_data_installed)
export(is_psam_table)
export(is_pvar_table)
export(is_random_samples_selector)
export(is_random_snps_selector)
export(is_sample_selector)
export(is_single_sample_selector)
export(is_single_snp_selector)
export(is_snp_range_selector)
export(is_snp_selector)
export(is_snp_window_selector)
export(keep)
export(make_bed)
export(make_bed_with_plink)
export(make_bed_with_plink2)
export(make_pgen)
export(missing_from_bfile)
export(pca)
export(plink2_assoc)
export(plink2_assoc_on_plink2_bin_data)
export(plink2_assoc_on_plink2_bin_files)
export(plink_assoc)
export(plinkr_report)
export(plot_pca_results)
export(read_plink2_bin_data)
export(read_plink2_pgen_file)
export(read_plink2_pgen_file_from_files)
export(read_plink2_psam_file)
export(read_plink2_pvar_file)
export(read_plink2_qassoc_file)
export(read_plink2_qassoc_files)
export(read_plink_assoc_adjusted_file)
export(read_plink_assoc_file)
export(read_plink_bed_file)
export(read_plink_bed_file_from_files)
export(read_plink_bim_file)
export(read_plink_bin_data)
export(read_plink_cov_file)
export(read_plink_eigenval_file)
export(read_plink_eigenvec_file)
export(read_plink_fam_file)
export(read_plink_frq_file)
export(read_plink_frq_strat_file)
export(read_plink_imiss_file)
export(read_plink_ld_file)
export(read_plink_lmiss_file)
export(read_plink_log_file)
export(read_plink_map_file)
export(read_plink_ped_file)
export(read_plink_phe_file)
export(read_plink_qassoc_file)
export(read_plink_qassoc_files)
export(read_plink_simfreq_file)
export(read_plink_text_data)
export(rename_fids)
export(rename_iids)
export(run_plink)
export(save_bed_table)
export(save_bim_table)
export(save_cov_table)
export(save_fam_table)
export(save_map_table)
export(save_ped_table)
export(save_pgen_table)
export(save_phe_table)
export(save_phenotype_data_table)
export(save_plink2_bin_data)
export(save_plink_bin_data)
export(save_plink_text_data)
export(save_psam_table)
export(save_pvar_table)
export(save_qassoc_table)
export(save_sample_ids)
export(save_simulate_qt_params)
export(select_samples)
export(select_snps)
export(simulate_qt)
export(uninstall_plink)
export(uninstall_plink_tutorial_data)
export(uninstall_plinks)